Wall clock time and date at job start Tue Mar 31 2020 19:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 O 1.42902 * 109.47036 * 119.99342 * 2 1 3 5 5 C 1.35668 * 116.99713 * 150.00185 * 4 2 1 6 6 C 1.39292 * 119.61493 * 180.02562 * 5 4 2 7 7 C 1.38326 * 119.30318 * 180.02562 * 6 5 4 8 8 C 1.38780 * 118.56346 * 0.02562 * 7 6 5 9 9 C 1.39125 * 119.18811 * 359.97438 * 8 7 6 10 10 C 1.48151 * 119.69457 * 179.97438 * 9 8 7 11 11 O 1.21521 * 119.99469 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00274 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00256 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46596 * 325.00243 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 17 17 C 1.53001 * 109.47049 * 64.99864 * 16 13 12 18 18 C 1.53002 * 109.46964 * 180.02562 * 17 16 13 19 19 N 1.46504 * 109.46727 * 180.02562 * 18 17 16 20 20 C 1.36940 * 119.99562 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99756 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99952 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99993 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47280 * 89.99597 * 24 22 20 26 26 H 1.48499 * 109.46811 * 209.99599 * 24 22 20 27 27 H 1.48501 * 109.47190 * 329.99205 * 24 22 20 28 28 N 1.31895 * 119.61953 * 0.29658 * 5 4 2 29 29 H 1.08993 * 109.47422 * 300.00032 * 1 2 3 30 30 H 1.09001 * 109.46798 * 60.00540 * 1 2 3 31 31 H 1.09005 * 109.47138 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47872 * 239.99856 * 2 1 3 33 33 H 1.08997 * 109.47337 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46912 * 299.99390 * 3 2 1 35 35 H 1.09001 * 109.47398 * 59.99878 * 3 2 1 36 36 H 1.07998 * 120.34885 * 0.04156 * 6 5 4 37 37 H 1.08006 * 120.71565 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.40668 * 180.02562 * 8 7 6 39 39 H 0.97005 * 120.00370 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 41 41 H 1.08993 * 109.46955 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 43 43 H 1.08998 * 109.47192 * 185.00019 * 16 13 12 44 44 H 1.08998 * 109.46934 * 304.99865 * 16 13 12 45 45 H 1.08998 * 109.47250 * 300.00119 * 17 16 13 46 46 H 1.08998 * 109.47252 * 60.00195 * 17 16 13 47 47 H 1.09002 * 109.46615 * 299.99612 * 18 17 16 48 48 H 1.08998 * 109.47254 * 59.99857 * 18 17 16 49 49 H 0.96997 * 120.00417 * 0.02562 * 19 18 17 50 50 H 0.96997 * 119.99979 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.1986 -1.3128 1.0654 6 6 3.7141 -1.9874 2.1696 7 6 4.9306 -2.6366 2.0592 8 6 5.5987 -2.5916 0.8436 9 6 5.0272 -1.8996 -0.2195 10 6 5.7311 -1.8439 -1.5220 11 8 6.8022 -2.4015 -1.6580 12 7 5.1834 -1.1749 -2.5558 13 6 5.8791 -1.1203 -3.8439 14 1 6.9551 -1.0801 -3.6742 15 6 5.5380 -2.3681 -4.6612 16 6 5.4366 0.1279 -4.6101 17 6 5.8884 1.3781 -3.8527 18 6 5.4453 2.6263 -4.6187 19 7 5.8785 3.8234 -3.8937 20 6 5.5932 5.0665 -4.3923 21 1 5.0484 5.1643 -5.3198 22 6 6.0031 6.2008 -3.7052 23 7 5.7293 7.3956 -4.1847 24 14 6.9447 6.0315 -2.1008 25 1 8.4013 5.9798 -2.3847 26 1 6.6513 7.1976 -1.2294 27 1 6.5298 4.7826 -1.4127 28 7 3.8588 -1.2838 -0.0761 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 3.1696 -2.0037 3.1022 37 1 5.3517 -3.1663 2.9010 38 1 6.5502 -3.0884 0.7241 39 1 4.3285 -0.7295 -2.4471 40 1 4.4620 -2.4084 -4.8308 41 1 6.0560 -2.3276 -5.6193 42 1 5.8533 -3.2573 -4.1153 43 1 5.8855 0.1227 -5.6034 44 1 4.3505 0.1315 -4.7023 45 1 5.4395 1.3833 -2.8595 46 1 6.9745 1.3744 -3.7606 47 1 5.8940 2.6213 -5.6120 48 1 4.3592 2.6298 -4.7105 49 1 6.3681 3.7356 -3.0610 50 1 6.0161 8.1882 -3.7047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675996860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:40 Heat of formation + Delta-G solvation = -65.050966 kcal Electronic energy + Delta-G solvation = -29268.403221 eV Core-core repulsion = 25294.961759 eV Total energy + Delta-G solvation = -3973.441461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99498 -40.74653 -39.12938 -38.01312 -36.66532 -34.45287 -34.22972 -33.75572 -32.64937 -31.49336 -30.84572 -28.18867 -27.40912 -26.14898 -24.69805 -24.32741 -22.69768 -22.36037 -22.13135 -21.55373 -19.72807 -19.62910 -18.71902 -17.41309 -17.03948 -16.91468 -16.82650 -16.60197 -16.17594 -15.95413 -15.79391 -15.45066 -15.29072 -14.99631 -14.85248 -14.59365 -14.35323 -14.09386 -13.86881 -13.58643 -13.53186 -13.29287 -13.20391 -13.15133 -13.07498 -12.88270 -12.87527 -12.53764 -12.14494 -12.07080 -11.93594 -11.90596 -11.85165 -11.77407 -11.57336 -11.50023 -11.02677 -10.99985 -10.66388 -10.17833 -9.60958 -9.32163 -8.06134 -5.39124 -0.43762 0.21039 1.33876 1.36380 1.43590 1.64734 1.93796 2.04053 2.44358 2.76068 2.91590 3.25533 3.46873 3.76308 3.84818 3.88338 3.93641 4.00115 4.00754 4.06819 4.13945 4.19007 4.25179 4.35605 4.46092 4.53189 4.61493 4.67072 4.79684 4.79989 4.82287 4.83600 4.86824 4.87405 4.93526 4.97810 5.07133 5.10964 5.20670 5.24285 5.28985 5.31320 5.37439 5.38786 5.50789 5.73013 6.14168 6.18728 6.34578 6.64188 7.04838 7.07004 7.82190 8.00019 9.15538 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.003412 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.327008 B = 8204.762198 C = 9586.050776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.307 6.307 5 C 0.305 3.695 6 C -0.163 4.163 7 C -0.035 4.035 8 C -0.153 4.153 9 C 0.094 3.906 10 C 0.568 3.432 11 O -0.563 6.563 12 N -0.695 5.695 13 C 0.140 3.860 14 H 0.074 0.926 15 C -0.154 4.154 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.153 3.847 19 N -0.763 5.763 20 C -0.236 4.236 21 H 0.059 0.941 22 C -0.061 4.061 23 N -0.982 5.982 24 Si 0.952 3.048 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.258 1.258 28 N -0.527 5.527 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.172 0.828 37 H 0.189 0.811 38 H 0.153 0.847 39 H 0.413 0.587 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.027 0.973 48 H 0.028 0.972 49 H 0.363 0.637 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -27.016 12.285 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.214 6.214 5 C 0.123 3.877 6 C -0.184 4.184 7 C -0.060 4.060 8 C -0.175 4.175 9 C -0.042 4.042 10 C 0.353 3.647 11 O -0.442 6.442 12 N -0.346 5.346 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.212 4.212 16 C -0.149 4.149 17 C -0.156 4.156 18 C 0.028 3.972 19 N -0.408 5.408 20 C -0.367 4.367 21 H 0.077 0.923 22 C -0.253 4.253 23 N -0.633 5.633 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.183 1.183 28 N -0.254 5.254 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.189 0.811 37 H 0.206 0.794 38 H 0.171 0.829 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.046 0.954 49 H 0.196 0.804 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.714 -26.774 11.461 30.128 hybrid contribution 0.613 0.647 1.211 1.504 sum -7.101 -26.127 12.672 29.893 Atomic orbital electron populations 1.21905 0.90993 1.03437 1.03955 1.22460 0.95806 0.92052 0.87137 1.22216 1.00894 0.96132 1.03381 1.86308 1.31264 1.64442 1.39414 1.20114 0.86475 0.91078 0.89997 1.21713 0.97919 0.99597 0.99122 1.21878 0.91961 0.94529 0.97619 1.22190 1.02357 0.99975 0.92983 1.20750 0.91310 0.97188 0.94952 1.18120 0.84263 0.78658 0.83632 1.90758 1.22406 1.47238 1.83823 1.45996 1.24944 1.52591 1.11055 1.21123 0.97224 0.95942 0.82085 0.90761 1.22098 1.02763 0.96123 1.00259 1.21762 1.02801 0.90803 0.99557 1.21656 1.00867 0.93855 0.99193 1.20831 0.97041 0.84811 0.94545 1.42810 1.68946 1.02284 1.26799 1.19085 1.28860 0.83777 1.04984 0.92293 1.25466 1.02616 0.94673 1.02523 1.69873 1.53625 0.97663 1.42124 0.85447 0.78907 0.77403 0.80255 1.20433 1.21879 1.18283 1.66977 1.09461 1.22639 1.26350 0.91383 0.89111 0.91345 0.89856 0.94020 0.90187 0.91769 0.81076 0.79373 0.82900 0.74990 0.91283 0.89791 0.93557 0.88462 0.89733 0.92549 0.92494 0.95506 0.95417 0.80422 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.56 71.98 0.69 -1.32 16 2 C 0.08 1.52 3.10 30.59 0.09 1.61 16 3 C -0.17 -3.56 9.53 71.98 0.69 -2.87 16 4 O -0.31 -6.25 9.76 -89.85 -0.88 -7.13 16 5 C 0.30 6.23 7.46 84.94 0.63 6.86 16 6 C -0.16 -2.35 10.05 22.54 0.23 -2.12 16 7 C -0.04 -0.43 10.16 22.42 0.23 -0.20 16 8 C -0.15 -2.80 9.63 22.61 0.22 -2.59 16 9 C 0.09 2.17 6.75 41.84 0.28 2.46 16 10 C 0.57 14.81 7.78 86.88 0.68 15.49 16 11 O -0.56 -17.45 15.98 -3.78 -0.06 -17.51 16 12 N -0.70 -15.74 4.52 -445.11 -2.01 -17.75 16 13 C 0.14 2.96 2.57 44.99 0.12 3.07 16 14 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 15 C -0.15 -2.69 9.48 71.98 0.68 -2.01 16 16 C -0.11 -2.29 4.75 30.59 0.15 -2.14 16 17 C -0.12 -3.38 5.22 30.60 0.16 -3.22 16 18 C 0.15 5.75 6.26 86.38 0.54 6.29 16 19 N -0.76 -36.74 5.41 -343.44 -1.86 -38.59 16 20 C -0.24 -13.79 10.47 84.03 0.88 -12.91 16 21 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 22 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 23 N -0.98 -63.75 13.97 21.65 0.30 -63.45 16 24 Si 0.95 46.78 27.73 68.60 1.90 48.68 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 27 H -0.26 -11.66 6.52 99.48 0.65 -11.02 16 28 N -0.53 -11.88 7.82 -298.20 -2.33 -14.21 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.62 6.98 -2.39 -0.02 1.60 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.15 2.65 7.63 -2.91 -0.02 2.62 16 39 H 0.41 8.73 7.93 -92.70 -0.74 8.00 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.36 16.95 5.53 -92.71 -0.51 16.44 16 50 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -75.46 414.07 1.42 -74.04 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.37 Total: 32.72 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.72 Total: 3.19 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -5.90 Total: -134.00 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.94 Total: -24.64 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.90 Total: 48.68 kcal Total: -75.46 1.42 -74.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675996860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.991 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds