Wall clock time and date at job start Tue Mar 31 2020 18:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.28988 * 2 1 4 4 C 1.53997 * 110.33108 * 237.86522 * 2 1 3 5 5 N 1.47483 * 107.08540 * 242.41965 * 4 2 1 6 6 C 1.34773 * 127.03749 * 154.51810 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.74587 * 6 5 4 8 8 C 1.50706 * 120.00081 * 0.02562 * 6 5 4 9 9 H 1.09003 * 115.55608 * 33.99011 * 8 6 5 10 10 C 1.53123 * 117.51042 * 248.19281 * 8 6 5 11 11 C 1.52456 * 117.51588 * 179.72614 * 8 6 5 12 12 C 1.53262 * 128.58336 * 349.84954 * 11 8 6 13 13 C 1.53887 * 86.88078 * 194.88707 * 12 11 8 14 14 C 1.53255 * 128.58836 * 225.04754 * 11 8 6 15 15 C 1.48122 * 105.92888 * 334.77295 * 5 4 2 16 16 C 1.54590 * 103.42057 * 39.03103 * 15 5 4 17 17 H 1.08994 * 110.58024 * 81.17088 * 16 15 5 18 18 N 1.46901 * 110.83141 * 204.44352 * 16 15 5 19 19 C 1.46897 * 111.00491 * 268.56183 * 18 16 15 20 20 C 1.50692 * 109.47477 * 179.97438 * 19 18 16 21 21 O 1.21287 * 120.00381 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00080 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00308 * 179.97438 * 22 20 19 24 24 H 1.07996 * 119.99563 * 0.02562 * 23 22 20 25 25 C 1.38944 * 120.00344 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99989 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00406 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46806 * 60.00309 * 27 25 23 29 29 H 1.48496 * 109.47200 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.47440 * 300.00820 * 27 25 23 31 31 H 1.08997 * 109.47331 * 180.67968 * 1 2 3 32 32 H 1.08992 * 109.47486 * 300.68439 * 1 2 3 33 33 H 1.09001 * 109.47079 * 60.67962 * 1 2 3 34 34 H 1.09003 * 109.91557 * 123.05093 * 4 2 1 35 35 H 1.09011 * 110.07218 * 1.86237 * 4 2 1 36 36 H 1.08993 * 117.51512 * 359.97438 * 10 8 6 37 37 H 1.09003 * 117.51133 * 145.10801 * 10 8 6 38 38 H 1.08995 * 113.64468 * 309.38362 * 12 11 8 39 39 H 1.08998 * 113.64767 * 80.39348 * 12 11 8 40 40 H 1.09008 * 113.59095 * 270.39277 * 13 12 11 41 41 H 1.09003 * 113.59038 * 139.57273 * 13 12 11 42 42 H 1.08995 * 113.64655 * 279.61212 * 14 11 8 43 43 H 1.08997 * 113.64260 * 50.52374 * 14 11 8 44 44 H 1.09006 * 110.65790 * 157.51044 * 15 5 4 45 45 H 1.08995 * 110.66249 * 280.62504 * 15 5 4 46 46 H 1.00908 * 111.00291 * 32.51724 * 18 16 15 47 47 H 1.09007 * 109.46605 * 300.00138 * 19 18 16 48 48 H 1.09003 * 109.46929 * 59.99148 * 19 18 16 49 49 H 0.96999 * 120.00086 * 0.02562 * 22 20 19 50 50 H 0.97001 * 120.00189 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2228 5 7 2.8276 -1.9217 -0.7102 6 6 3.0613 -3.0872 -1.3452 7 8 3.7133 -3.9537 -0.8021 8 6 2.5179 -3.3115 -2.7329 9 1 2.4763 -2.4280 -3.3700 10 6 1.4116 -4.3571 -2.8988 11 6 2.8216 -4.6479 -3.4008 12 6 3.7905 -5.7451 -2.9467 13 6 3.6565 -6.3325 -4.3627 14 6 3.2892 -4.9149 -4.8356 15 6 3.2788 -1.5397 0.6479 16 6 2.0670 -0.7736 1.2263 17 1 1.3174 -1.4699 1.6021 18 7 2.4917 0.1553 2.2822 19 6 2.4359 -0.4869 3.6022 20 6 2.8781 0.4941 4.6572 21 8 3.2079 1.6175 4.3407 22 7 2.9072 0.1230 5.9525 23 6 3.3100 1.0152 6.9123 24 1 3.6037 2.0156 6.6304 25 6 3.3395 0.6329 8.2478 26 7 2.9817 -0.5842 8.5909 27 14 3.8877 1.8488 9.5557 28 1 2.9886 3.0306 9.5407 29 1 3.8306 1.1997 10.8900 30 1 5.2800 2.2826 9.2758 31 1 -0.3634 -1.0275 0.0122 32 1 -0.3634 0.5244 0.8837 33 1 -0.3633 0.5032 -0.8960 34 1 2.7181 -0.1226 -1.8101 35 1 1.2354 -1.1157 -1.8387 36 1 1.0774 -4.8828 -2.0045 37 1 0.6418 -4.1615 -3.6454 38 1 4.7910 -5.3777 -2.7186 39 1 3.3863 -6.3895 -2.1660 40 1 2.8421 -7.0501 -4.4620 41 1 4.5972 -6.6994 -4.7735 42 1 2.4833 -4.8939 -5.5692 43 1 4.1493 -4.3154 -5.1338 44 1 3.4934 -2.4258 1.2453 45 1 4.1522 -0.8898 0.5944 46 1 3.4147 0.5178 2.0952 47 1 1.4141 -0.8063 3.8078 48 1 3.0966 -1.3538 3.6127 49 1 2.6438 -0.7755 6.2057 50 1 3.0027 -0.8512 9.5232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691128224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:31 Heat of formation + Delta-G solvation = -18.327736 kcal Electronic energy + Delta-G solvation = -28650.801178 eV Core-core repulsion = 24679.385788 eV Total energy + Delta-G solvation = -3971.415390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.76093 -39.51827 -38.27139 -37.60934 -34.73953 -33.98921 -33.74650 -32.52061 -31.22321 -29.19737 -26.67023 -26.41317 -25.97178 -24.56842 -23.55342 -23.34431 -22.18100 -20.48370 -19.54399 -19.20991 -18.44098 -17.89232 -17.45527 -16.44749 -16.17589 -15.70580 -15.50984 -15.36837 -15.26008 -14.50804 -14.42459 -14.16578 -13.92147 -13.61006 -13.59151 -13.37891 -13.11399 -12.84340 -12.63267 -12.39450 -12.32920 -12.15945 -12.04981 -11.87374 -11.76263 -11.65597 -11.52703 -11.18234 -11.10211 -10.99806 -10.81797 -10.65952 -10.44284 -10.42042 -10.21504 -10.10322 -9.84783 -9.50414 -8.93486 -8.47231 -8.09208 -7.96506 -6.41652 -3.82721 2.29555 2.66130 3.20213 3.26068 3.30351 3.42013 3.89097 3.90825 4.06816 4.24904 4.27209 4.32898 4.44052 4.46709 4.50888 4.57597 4.75316 4.81291 5.03871 5.04562 5.09565 5.16626 5.20486 5.25907 5.29474 5.33163 5.37205 5.40702 5.49670 5.56648 5.57738 5.60490 5.63705 5.70215 5.76115 5.83449 5.85397 5.94297 5.98273 5.99523 6.10111 6.10768 6.18947 6.29485 7.15194 7.35844 7.54915 7.56433 8.01015 8.05488 8.60563 9.17346 9.53697 10.04804 10.75899 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.001961 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.385651 B =14272.335358 C =15092.972944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.096 0.904 4 C 0.104 3.896 5 N -0.616 5.616 6 C 0.561 3.439 7 O -0.536 6.536 8 C -0.175 4.175 9 H 0.121 0.879 10 C -0.120 4.120 11 C -0.127 4.127 12 C -0.083 4.083 13 C -0.142 4.142 14 C -0.098 4.098 15 C 0.074 3.926 16 C 0.081 3.919 17 H 0.091 0.909 18 N -0.652 5.652 19 C 0.048 3.952 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.932 3.068 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -8.802 -26.549 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.115 0.885 4 C -0.020 4.020 5 N -0.350 5.350 6 C 0.350 3.650 7 O -0.412 6.412 8 C -0.196 4.196 9 H 0.139 0.861 10 C -0.158 4.158 11 C -0.128 4.128 12 C -0.120 4.120 13 C -0.179 4.179 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.031 4.031 17 H 0.109 0.891 18 N -0.283 5.283 19 C -0.084 4.084 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.465 -8.388 -26.233 27.901 hybrid contribution 0.810 -0.362 0.898 1.262 sum -3.655 -8.750 -25.335 27.051 Atomic orbital electron populations 1.21785 0.93803 1.01643 1.02369 1.22086 0.96733 1.00250 0.92486 0.88549 1.22305 0.95514 0.87118 0.97036 1.48617 1.53861 1.14970 1.17555 1.19293 0.79594 0.80112 0.85977 1.90709 1.40081 1.42756 1.67683 1.22101 1.06522 0.95568 0.95428 0.86078 1.22796 0.90584 0.99363 1.03018 1.22331 0.98145 0.95075 0.97229 1.22332 0.98761 0.94850 0.96083 1.22815 1.01725 0.96087 0.97322 1.22504 1.00833 0.96952 0.93270 1.23295 0.98091 1.00440 0.83219 1.22738 0.95882 0.92795 0.91709 0.89127 1.60175 1.34295 1.34064 0.99812 1.21747 1.01770 0.95572 0.89316 1.19762 0.85122 0.89029 0.83511 1.90521 1.53613 1.21435 1.81261 1.41858 1.58337 1.14881 1.04818 1.19651 1.41118 0.96237 0.85985 0.87949 1.25272 0.97469 0.96922 0.98289 1.69606 1.47968 1.17699 1.18967 0.85907 0.79318 0.79858 0.79068 1.19875 1.20981 1.19920 0.92950 0.91414 0.92642 0.91497 0.90502 0.88009 0.87554 0.89427 0.91217 0.90115 0.91208 0.91226 0.89612 0.89805 0.90800 0.82741 0.89473 0.93668 0.77436 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.90 37.16 0.33 -0.89 16 2 C -0.10 -0.93 3.34 -89.25 -0.30 -1.22 16 3 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 4 C 0.10 0.87 6.24 -2.98 -0.02 0.85 16 5 N -0.62 -6.85 3.29 -169.98 -0.56 -7.41 16 6 C 0.56 6.91 7.68 -10.98 -0.08 6.83 16 7 O -0.54 -8.48 15.35 5.56 0.09 -8.39 16 8 C -0.18 -1.57 5.32 -91.98 -0.49 -2.06 16 9 H 0.12 0.87 7.83 -51.93 -0.41 0.46 16 10 C -0.12 -0.92 10.24 -26.94 -0.28 -1.19 16 11 C -0.13 -1.09 2.88 -154.79 -0.45 -1.54 16 12 C -0.08 -0.79 6.47 -26.13 -0.17 -0.96 16 13 C -0.14 -0.98 8.08 -25.81 -0.21 -1.19 16 14 C -0.10 -0.65 8.10 -26.14 -0.21 -0.87 16 15 C 0.07 0.90 6.65 -2.31 -0.02 0.88 16 16 C 0.08 0.96 2.92 -66.03 -0.19 0.77 16 17 H 0.09 1.10 7.55 -51.93 -0.39 0.71 16 18 N -0.65 -9.92 5.95 -106.21 -0.63 -10.56 16 19 C 0.05 0.84 6.03 -4.98 -0.03 0.81 16 20 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 21 O -0.58 -15.65 15.78 5.55 0.09 -15.57 16 22 N -0.56 -14.25 5.29 -10.97 -0.06 -14.31 16 23 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 27 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 30 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 31 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 7.23 -51.92 -0.38 0.15 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 45 H 0.07 0.89 7.77 -51.93 -0.40 0.48 16 46 H 0.35 5.55 7.91 -39.29 -0.31 5.24 16 47 H 0.09 1.40 8.08 -51.92 -0.42 0.98 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -32.67 406.79 -10.14 -42.80 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.46 Total: 12.70 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.43 Total: 2.40 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.53 Total: -56.18 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.67 -10.14 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691128224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.476 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds