Wall clock time and date at job start Tue Mar 31 2020 18:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.28988 * 2 1 4 4 C 1.53997 * 110.33108 * 237.86522 * 2 1 3 5 5 N 1.47483 * 107.08540 * 242.41965 * 4 2 1 6 6 C 1.34773 * 127.03749 * 154.51810 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.74587 * 6 5 4 8 8 C 1.50706 * 120.00081 * 0.02562 * 6 5 4 9 9 H 1.09003 * 115.55608 * 33.99011 * 8 6 5 10 10 C 1.53123 * 117.51042 * 248.19281 * 8 6 5 11 11 C 1.52456 * 117.51588 * 179.72614 * 8 6 5 12 12 C 1.53262 * 128.58336 * 349.84954 * 11 8 6 13 13 C 1.53887 * 86.88078 * 194.88707 * 12 11 8 14 14 C 1.53255 * 128.58836 * 225.04754 * 11 8 6 15 15 C 1.48122 * 105.92888 * 334.77295 * 5 4 2 16 16 C 1.54590 * 103.42057 * 39.03103 * 15 5 4 17 17 H 1.08994 * 110.58024 * 81.17088 * 16 15 5 18 18 N 1.46901 * 110.83141 * 204.44352 * 16 15 5 19 19 C 1.46897 * 111.00491 * 268.56183 * 18 16 15 20 20 C 1.50692 * 109.47477 * 179.97438 * 19 18 16 21 21 O 1.21287 * 120.00381 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00080 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00308 * 179.97438 * 22 20 19 24 24 H 1.07996 * 119.99563 * 0.02562 * 23 22 20 25 25 C 1.38944 * 120.00344 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99989 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00406 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46806 * 60.00309 * 27 25 23 29 29 H 1.48496 * 109.47200 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.47440 * 300.00820 * 27 25 23 31 31 H 1.08997 * 109.47331 * 180.67968 * 1 2 3 32 32 H 1.08992 * 109.47486 * 300.68439 * 1 2 3 33 33 H 1.09001 * 109.47079 * 60.67962 * 1 2 3 34 34 H 1.09003 * 109.91557 * 123.05093 * 4 2 1 35 35 H 1.09011 * 110.07218 * 1.86237 * 4 2 1 36 36 H 1.08993 * 117.51512 * 359.97438 * 10 8 6 37 37 H 1.09003 * 117.51133 * 145.10801 * 10 8 6 38 38 H 1.08995 * 113.64468 * 309.38362 * 12 11 8 39 39 H 1.08998 * 113.64767 * 80.39348 * 12 11 8 40 40 H 1.09008 * 113.59095 * 270.39277 * 13 12 11 41 41 H 1.09003 * 113.59038 * 139.57273 * 13 12 11 42 42 H 1.08995 * 113.64655 * 279.61212 * 14 11 8 43 43 H 1.08997 * 113.64260 * 50.52374 * 14 11 8 44 44 H 1.09006 * 110.65790 * 157.51044 * 15 5 4 45 45 H 1.08995 * 110.66249 * 280.62504 * 15 5 4 46 46 H 1.00908 * 111.00291 * 32.51724 * 18 16 15 47 47 H 1.09007 * 109.46605 * 300.00138 * 19 18 16 48 48 H 1.09003 * 109.46929 * 59.99148 * 19 18 16 49 49 H 0.96999 * 120.00086 * 0.02562 * 22 20 19 50 50 H 0.97001 * 120.00189 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2228 5 7 2.8276 -1.9217 -0.7102 6 6 3.0613 -3.0872 -1.3452 7 8 3.7133 -3.9537 -0.8021 8 6 2.5179 -3.3115 -2.7329 9 1 2.4763 -2.4280 -3.3700 10 6 1.4116 -4.3571 -2.8988 11 6 2.8216 -4.6479 -3.4008 12 6 3.7905 -5.7451 -2.9467 13 6 3.6565 -6.3325 -4.3627 14 6 3.2892 -4.9149 -4.8356 15 6 3.2788 -1.5397 0.6479 16 6 2.0670 -0.7736 1.2263 17 1 1.3174 -1.4699 1.6021 18 7 2.4917 0.1553 2.2822 19 6 2.4359 -0.4869 3.6022 20 6 2.8781 0.4941 4.6572 21 8 3.2079 1.6175 4.3407 22 7 2.9072 0.1230 5.9525 23 6 3.3100 1.0152 6.9123 24 1 3.6037 2.0156 6.6304 25 6 3.3395 0.6329 8.2478 26 7 2.9817 -0.5842 8.5909 27 14 3.8877 1.8488 9.5557 28 1 2.9886 3.0306 9.5407 29 1 3.8306 1.1997 10.8900 30 1 5.2800 2.2826 9.2758 31 1 -0.3634 -1.0275 0.0122 32 1 -0.3634 0.5244 0.8837 33 1 -0.3633 0.5032 -0.8960 34 1 2.7181 -0.1226 -1.8101 35 1 1.2354 -1.1157 -1.8387 36 1 1.0774 -4.8828 -2.0045 37 1 0.6418 -4.1615 -3.6454 38 1 4.7910 -5.3777 -2.7186 39 1 3.3863 -6.3895 -2.1660 40 1 2.8421 -7.0501 -4.4620 41 1 4.5972 -6.6994 -4.7735 42 1 2.4833 -4.8939 -5.5692 43 1 4.1493 -4.3154 -5.1338 44 1 3.4934 -2.4258 1.2453 45 1 4.1522 -0.8898 0.5944 46 1 3.4147 0.5178 2.0952 47 1 1.4141 -0.8063 3.8078 48 1 3.0966 -1.3538 3.6127 49 1 2.6438 -0.7755 6.2057 50 1 3.0027 -0.8512 9.5232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691128224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:30 Heat of formation + Delta-G solvation = -40.114157 kcal Electronic energy + Delta-G solvation = -28651.745908 eV Core-core repulsion = 24679.385788 eV Total energy + Delta-G solvation = -3972.360120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58957 -40.45546 -39.90428 -38.64679 -36.22320 -35.55955 -34.60934 -33.43874 -33.23289 -30.33840 -27.99033 -27.36424 -26.59388 -26.10066 -24.62824 -23.94876 -23.07430 -21.52704 -20.96155 -20.27905 -19.91771 -19.13263 -18.35790 -17.75069 -17.28565 -16.98286 -16.57215 -16.35141 -16.11674 -16.07872 -15.86052 -15.40668 -15.25395 -14.67808 -14.59278 -14.39605 -14.20200 -13.97615 -13.60442 -13.51217 -13.36777 -13.23599 -13.08143 -13.00683 -12.88062 -12.82108 -12.45158 -12.44490 -12.33789 -12.13912 -12.02530 -11.91985 -11.67431 -11.51290 -11.29643 -11.04717 -10.83736 -10.64196 -10.36908 -10.03654 -9.86409 -9.33879 -8.47725 -5.96921 1.39137 1.40997 1.42070 1.52211 1.79523 2.02915 2.28146 2.75634 2.84893 3.19107 3.24790 3.43490 3.56724 3.65666 3.69128 3.76330 3.87703 3.90160 3.95469 4.06145 4.20470 4.21603 4.30709 4.39403 4.49573 4.50490 4.53796 4.60389 4.69708 4.73085 4.78518 4.81862 4.84570 4.88050 4.90036 4.96185 5.07002 5.08891 5.14557 5.18267 5.32989 5.38412 5.39550 5.46163 5.50431 5.86622 6.05842 6.29881 6.49133 6.57686 7.09132 7.10549 7.53897 8.08501 8.69396 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.001961 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.385651 B =14272.335358 C =15092.972944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.092 0.908 4 C 0.107 3.893 5 N -0.615 5.615 6 C 0.552 3.448 7 O -0.583 6.583 8 C -0.179 4.179 9 H 0.148 0.852 10 C -0.105 4.105 11 C -0.140 4.140 12 C -0.097 4.097 13 C -0.134 4.134 14 C -0.086 4.086 15 C 0.075 3.925 16 C 0.086 3.914 17 H 0.090 0.910 18 N -0.658 5.658 19 C 0.063 3.937 20 C 0.439 3.561 21 O -0.620 6.620 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.081 0.919 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.995 3.005 28 H -0.271 1.271 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.348 0.652 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -8.621 -28.826 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.016 4.016 5 N -0.348 5.348 6 C 0.343 3.657 7 O -0.463 6.463 8 C -0.199 4.199 9 H 0.165 0.835 10 C -0.142 4.142 11 C -0.141 4.141 12 C -0.135 4.135 13 C -0.171 4.171 14 C -0.123 4.123 15 C -0.050 4.050 16 C -0.026 4.026 17 H 0.109 0.891 18 N -0.289 5.289 19 C -0.069 4.069 20 C 0.226 3.774 21 O -0.507 6.507 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.099 0.901 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.818 3.182 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.168 0.832 47 H 0.123 0.877 48 H 0.079 0.921 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.894 -8.209 -28.535 30.272 hybrid contribution 1.264 -0.440 1.604 2.089 sum -4.630 -8.649 -26.931 28.662 Atomic orbital electron populations 1.21755 0.92758 1.02004 1.02649 1.22059 0.97500 0.99805 0.91633 0.88942 1.22463 0.96339 0.86142 0.96609 1.48707 1.53650 1.15498 1.16951 1.20003 0.78975 0.79616 0.87147 1.90689 1.42261 1.44323 1.69054 1.22149 1.07425 0.96861 0.93491 0.83479 1.22894 0.90620 0.97698 1.03026 1.22521 0.98732 0.94431 0.98376 1.22318 0.98003 0.95872 0.97271 1.22806 1.02468 0.96815 0.95015 1.22473 1.01457 0.96099 0.92318 1.23155 0.98284 0.99478 0.84088 1.22755 0.95599 0.92613 0.91609 0.89146 1.60219 1.34109 1.34982 0.99637 1.21593 1.02732 0.94098 0.88500 1.20773 0.83266 0.89453 0.83871 1.90488 1.54815 1.23482 1.81906 1.41940 1.58956 1.14743 1.05389 1.19648 1.43177 0.96161 0.87420 0.90121 1.26080 0.96941 0.98706 0.99706 1.69674 1.47979 1.18816 1.19705 0.84963 0.78776 0.77730 0.76719 1.19568 1.19557 1.19690 0.92463 0.93231 0.90358 0.89847 0.87907 0.89452 0.84321 0.91688 0.93263 0.89137 0.90578 0.89080 0.89384 0.91970 0.90902 0.83241 0.87723 0.92137 0.77058 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.90 71.98 0.64 -1.38 16 2 C -0.09 -1.56 3.34 -9.91 -0.03 -1.60 16 3 H 0.09 1.73 8.05 -2.39 -0.02 1.71 16 4 C 0.11 1.49 6.24 86.53 0.54 2.03 16 5 N -0.62 -13.02 3.29 -810.08 -2.67 -15.68 16 6 C 0.55 13.34 7.68 87.66 0.67 14.02 16 7 O -0.58 -19.26 15.35 -3.04 -0.05 -19.31 16 8 C -0.18 -2.81 5.32 -11.68 -0.06 -2.88 16 9 H 0.15 1.53 7.83 -2.39 -0.02 1.51 16 10 C -0.11 -1.33 10.24 30.46 0.31 -1.02 16 11 C -0.14 -2.18 2.88 -52.37 -0.15 -2.33 16 12 C -0.10 -1.90 6.47 30.98 0.20 -1.70 16 13 C -0.13 -1.67 8.08 31.19 0.25 -1.41 16 14 C -0.09 -0.92 8.10 30.98 0.25 -0.67 16 15 C 0.08 1.83 6.65 86.61 0.58 2.40 16 16 C 0.09 1.97 2.92 46.01 0.13 2.10 16 17 H 0.09 2.11 7.55 -2.39 -0.02 2.09 16 18 N -0.66 -19.90 5.95 -489.95 -2.92 -22.82 16 19 C 0.06 2.18 6.03 85.55 0.52 2.69 16 20 C 0.44 20.93 7.82 87.65 0.69 21.62 16 21 O -0.62 -34.13 15.78 -3.05 -0.05 -34.18 16 22 N -0.57 -29.76 5.29 -307.00 -1.62 -31.38 16 23 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 24 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 25 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 26 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 27 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 30 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 31 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.97 7.23 -2.38 -0.02 0.95 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.77 7.85 -2.38 -0.02 1.75 16 45 H 0.07 1.78 7.77 -2.39 -0.02 1.76 16 46 H 0.35 11.06 7.91 -89.69 -0.71 10.35 16 47 H 0.10 3.27 8.08 -2.38 -0.02 3.25 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 50 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -73.45 406.79 0.33 -73.12 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.49 Total: 41.81 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 5.81 Total: 13.21 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -6.92 Total: -119.96 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.09 Total: -53.49 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -73.45 0.33 -73.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691128224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.009 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds