Wall clock time and date at job start Tue Mar 31 2020 19:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47331 * 2 1 4 4 C 1.53004 * 109.46766 * 119.99598 * 2 1 3 5 5 N 1.46494 * 109.46960 * 174.99931 * 4 2 1 6 6 C 1.35442 * 119.47303 * 270.02313 * 5 4 2 7 7 C 1.35758 * 121.23093 * 179.97438 * 6 5 4 8 8 C 1.39466 * 120.13291 * 359.78819 * 7 6 5 9 9 C 1.39346 * 118.95687 * 0.45940 * 8 7 6 10 10 C 1.47090 * 120.58561 * 179.80325 * 9 8 7 11 11 O 1.21645 * 119.99556 * 5.89546 * 10 9 8 12 12 N 1.34768 * 119.99983 * 185.89837 * 10 9 8 13 13 C 1.46499 * 120.00186 * 174.94664 * 12 10 9 14 14 H 1.08997 * 109.46759 * 324.99888 * 13 12 10 15 15 C 1.53001 * 109.47407 * 84.99713 * 13 12 10 16 16 C 1.53004 * 109.47356 * 205.00409 * 13 12 10 17 17 C 1.52998 * 109.47357 * 64.99277 * 16 13 12 18 18 N 1.46494 * 109.47005 * 179.97438 * 17 16 13 19 19 C 1.36940 * 120.00085 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99849 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00169 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99971 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46952 * 90.00190 * 23 21 19 25 25 H 1.48501 * 109.47082 * 209.99898 * 23 21 19 26 26 H 1.48494 * 109.47491 * 330.00107 * 23 21 19 27 27 C 1.34653 * 119.47319 * 90.00173 * 5 4 2 28 28 O 1.21891 * 120.10272 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.47584 * 300.00661 * 1 2 3 30 30 H 1.08998 * 109.47001 * 60.00122 * 1 2 3 31 31 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47260 * 239.99529 * 2 1 3 33 33 H 1.09002 * 109.46849 * 59.99353 * 3 2 1 34 34 H 1.08997 * 109.46842 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46537 * 299.99845 * 3 2 1 36 36 H 1.09000 * 109.46834 * 54.99905 * 4 2 1 37 37 H 1.08994 * 109.47134 * 295.00120 * 4 2 1 38 38 H 1.08001 * 119.38264 * 359.97438 * 6 5 4 39 39 H 1.07995 * 119.92969 * 180.02562 * 7 6 5 40 40 H 1.07996 * 120.52498 * 180.24743 * 8 7 6 41 41 H 0.97008 * 120.00104 * 354.94363 * 12 10 9 42 42 H 1.08997 * 109.47299 * 180.02562 * 15 13 12 43 43 H 1.08995 * 109.47225 * 300.00825 * 15 13 12 44 44 H 1.09007 * 109.46296 * 60.00116 * 15 13 12 45 45 H 1.08999 * 109.46850 * 185.00167 * 16 13 12 46 46 H 1.09008 * 109.46316 * 304.99575 * 16 13 12 47 47 H 1.08995 * 109.47416 * 300.00858 * 17 16 13 48 48 H 1.09000 * 109.46703 * 60.00362 * 17 16 13 49 49 H 0.97004 * 120.00162 * 0.02562 * 18 17 16 50 50 H 0.97001 * 120.00450 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.0671 -1.9084 0.6060 7 6 5.4161 -2.0421 0.5316 8 6 6.2477 -1.0540 1.0580 9 6 5.6712 0.0595 1.6658 10 6 6.5144 1.1209 2.2368 11 8 7.7211 1.0855 2.0872 12 7 5.9501 2.1325 2.9256 13 6 6.7954 3.1289 3.5881 14 1 7.6981 2.6473 3.9639 15 6 7.1788 4.2198 2.5861 16 6 6.0278 3.7546 4.7544 17 6 5.7531 2.6870 5.8154 18 7 5.0187 3.2863 6.9323 19 6 4.6602 2.5174 8.0073 20 1 4.9193 1.4692 8.0317 21 6 3.9639 3.0851 9.0654 22 7 3.6486 4.3626 9.0358 23 14 3.4743 2.0359 10.5313 24 1 4.5556 2.0714 11.5486 25 1 2.2202 2.5670 11.1233 26 1 3.2579 0.6354 10.0876 27 6 4.2565 0.1545 1.7186 28 8 3.7277 1.1206 2.2407 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6052 -1.7197 1.2953 37 1 1.7515 -0.1582 2.1370 38 1 3.4345 -2.6793 0.1913 39 1 5.8460 -2.9135 0.0603 40 1 7.3215 -1.1520 0.9987 41 1 4.9841 2.2009 2.9828 42 1 7.8081 4.9609 3.0788 43 1 7.7256 3.7740 1.7552 44 1 6.2760 4.7013 2.2102 45 1 6.6220 4.5570 5.1915 46 1 5.0824 4.1585 4.3920 47 1 5.1590 1.8846 5.3782 48 1 6.6985 2.2832 6.1776 49 1 4.7864 4.2279 6.9106 50 1 3.1624 4.7595 9.7754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699140554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:14 Heat of formation + Delta-G solvation = -38.369579 kcal Electronic energy + Delta-G solvation = -29748.903596 eV Core-core repulsion = 25776.619127 eV Total energy + Delta-G solvation = -3972.284469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91832 -39.38241 -37.38582 -36.78477 -36.15645 -34.15437 -33.64914 -31.70209 -30.72427 -29.91922 -27.71124 -27.53380 -27.36705 -25.16617 -23.82294 -23.01512 -21.79629 -21.11346 -20.52747 -20.22161 -18.12860 -17.84442 -17.24722 -16.82218 -16.41446 -15.98241 -15.79467 -15.12424 -14.84058 -14.70041 -14.44019 -14.05942 -13.84268 -13.66335 -13.38367 -13.29498 -13.17371 -12.87949 -12.73795 -12.67057 -12.62192 -12.47346 -12.34565 -12.15077 -11.65842 -11.48529 -11.33300 -11.18340 -11.07358 -10.91302 -10.67906 -10.48097 -10.45825 -10.25083 -10.12446 -9.94436 -9.71191 -9.59708 -8.79715 -8.66084 -8.27337 -6.81320 -5.67788 -2.95453 0.18800 1.54318 2.17910 2.76882 3.48662 3.53091 3.53663 3.55255 3.71925 4.09559 4.12702 4.32601 4.47759 4.53369 4.65930 4.71429 4.82435 4.88604 4.99818 5.07003 5.17836 5.25708 5.36438 5.46034 5.48317 5.52409 5.56233 5.58713 5.64706 5.66186 5.70950 5.85229 5.87596 5.91607 5.98370 6.07906 6.13615 6.15094 6.23414 6.41850 6.47815 6.51317 6.62894 6.87590 6.99685 7.07128 7.63244 7.78350 8.05745 8.51615 8.62027 9.62226 10.21921 10.57272 11.55497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009223 B = 0.003270 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.298998 B = 8560.290457 C = 9914.067942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.087 3.913 5 N -0.488 5.488 6 C 0.159 3.841 7 C -0.243 4.243 8 C 0.055 3.945 9 C -0.270 4.270 10 C 0.575 3.425 11 O -0.559 6.559 12 N -0.704 5.704 13 C 0.143 3.857 14 H 0.084 0.916 15 C -0.159 4.159 16 C -0.133 4.133 17 C 0.155 3.845 18 N -0.733 5.733 19 C -0.234 4.234 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.529 3.471 28 O -0.528 6.528 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.417 0.583 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -13.804 -25.831 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.203 4.203 4 C -0.034 4.034 5 N -0.195 5.195 6 C 0.029 3.971 7 C -0.266 4.266 8 C 0.031 3.969 9 C -0.278 4.278 10 C 0.362 3.638 11 O -0.440 6.440 12 N -0.364 5.364 13 C 0.038 3.962 14 H 0.102 0.898 15 C -0.217 4.217 16 C -0.171 4.171 17 C 0.027 3.973 18 N -0.377 5.377 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.331 3.669 28 O -0.408 6.408 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.263 0.737 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.170 -13.288 -25.419 28.764 hybrid contribution -0.794 -0.411 0.819 1.212 sum -2.964 -13.699 -24.600 28.313 Atomic orbital electron populations 1.21778 0.93640 1.02034 1.02890 1.21487 0.96786 0.97668 0.96734 1.21887 1.01267 0.94781 1.02386 1.22317 0.76438 1.02991 1.01612 1.45483 1.09509 1.18099 1.46456 1.22191 0.95627 0.88911 0.90415 1.20661 0.91702 1.03295 1.10907 1.22014 1.01609 0.88734 0.84495 1.21120 0.92319 1.01093 1.13224 1.17395 0.86839 0.81214 0.78359 1.90749 1.14166 1.78106 1.61009 1.46648 1.12809 1.25739 1.51187 1.20953 0.94409 0.88760 0.92046 0.89759 1.22144 1.01420 0.98499 0.99680 1.22033 1.00514 0.99493 0.95090 1.20623 0.94774 0.93994 0.87892 1.42365 1.66865 1.10369 1.18135 1.19248 1.28656 0.92916 0.95756 0.91349 1.24722 1.01593 0.96086 0.98779 1.69662 1.45520 1.10603 1.32647 0.86192 0.77699 0.79310 0.83047 1.21757 1.21799 1.20870 1.17005 0.87400 0.82727 0.79776 1.90688 1.73443 1.30581 1.46131 0.91832 0.91944 0.92435 0.90986 0.91259 0.92848 0.92874 0.88811 0.87281 0.81704 0.82976 0.83364 0.73720 0.91739 0.92402 0.92677 0.90416 0.91426 0.96206 0.96573 0.78349 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.11 -0.70 3.13 -90.62 -0.28 -0.98 16 3 C -0.15 -1.36 7.92 37.16 0.29 -1.07 16 4 C 0.09 0.61 4.92 -4.04 -0.02 0.59 16 5 N -0.49 -4.19 2.47 -119.34 -0.29 -4.49 16 6 C 0.16 0.86 10.25 -16.85 -0.17 0.68 16 7 C -0.24 -1.46 9.99 -40.01 -0.40 -1.86 16 8 C 0.05 0.54 9.70 -38.71 -0.38 0.16 16 9 C -0.27 -3.64 5.92 -104.50 -0.62 -4.26 16 10 C 0.57 9.62 7.69 -12.67 -0.10 9.52 16 11 O -0.56 -10.41 16.07 5.24 0.08 -10.33 16 12 N -0.70 -11.93 4.44 -54.99 -0.24 -12.17 16 13 C 0.14 2.39 2.54 -67.93 -0.17 2.22 16 14 H 0.08 1.49 7.65 -51.93 -0.40 1.10 16 15 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 16 C -0.13 -2.43 4.87 -26.73 -0.13 -2.57 16 17 C 0.15 3.50 6.15 -4.05 -0.02 3.48 16 18 N -0.73 -20.09 5.60 -59.91 -0.34 -20.42 16 19 C -0.23 -6.99 9.99 -15.06 -0.15 -7.15 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 22 N -0.94 -29.41 13.06 55.49 0.72 -28.69 16 23 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.53 6.80 6.00 -14.92 -0.09 6.71 16 28 O -0.53 -8.20 11.43 5.02 0.06 -8.15 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 34 H 0.05 0.60 6.06 -51.93 -0.31 0.29 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.36 8.00 -51.93 -0.42 -0.05 16 37 H 0.11 1.02 7.38 -51.93 -0.38 0.64 16 38 H 0.17 0.18 8.02 -52.49 -0.42 -0.24 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 40 H 0.15 1.38 7.71 -52.49 -0.40 0.97 16 41 H 0.42 7.31 5.21 -40.82 -0.21 7.10 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 44 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 47 H 0.02 0.47 7.75 -51.93 -0.40 0.07 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 10.87 7.67 -40.82 -0.31 10.55 16 50 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -36.96 404.30 -8.88 -45.84 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.29 Total: 11.50 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.64 Total: 2.53 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.15 Total: -65.77 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.14 Total: -18.48 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.96 -8.88 -45.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699140554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.467 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds