Wall clock time and date at job start Tue Mar 31 2020 19:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47331 * 2 1 4 4 C 1.53004 * 109.46766 * 119.99598 * 2 1 3 5 5 N 1.46494 * 109.46960 * 174.99931 * 4 2 1 6 6 C 1.35442 * 119.47303 * 270.02313 * 5 4 2 7 7 C 1.35758 * 121.23093 * 179.97438 * 6 5 4 8 8 C 1.39466 * 120.13291 * 359.78819 * 7 6 5 9 9 C 1.39346 * 118.95687 * 0.45940 * 8 7 6 10 10 C 1.47090 * 120.58561 * 179.80325 * 9 8 7 11 11 O 1.21645 * 119.99556 * 5.89546 * 10 9 8 12 12 N 1.34768 * 119.99983 * 185.89837 * 10 9 8 13 13 C 1.46499 * 120.00186 * 174.94664 * 12 10 9 14 14 H 1.08997 * 109.46759 * 324.99888 * 13 12 10 15 15 C 1.53001 * 109.47407 * 84.99713 * 13 12 10 16 16 C 1.53004 * 109.47356 * 205.00409 * 13 12 10 17 17 C 1.52998 * 109.47357 * 64.99277 * 16 13 12 18 18 N 1.46494 * 109.47005 * 179.97438 * 17 16 13 19 19 C 1.36940 * 120.00085 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99849 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00169 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99971 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46952 * 90.00190 * 23 21 19 25 25 H 1.48501 * 109.47082 * 209.99898 * 23 21 19 26 26 H 1.48494 * 109.47491 * 330.00107 * 23 21 19 27 27 C 1.34653 * 119.47319 * 90.00173 * 5 4 2 28 28 O 1.21891 * 120.10272 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.47584 * 300.00661 * 1 2 3 30 30 H 1.08998 * 109.47001 * 60.00122 * 1 2 3 31 31 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47260 * 239.99529 * 2 1 3 33 33 H 1.09002 * 109.46849 * 59.99353 * 3 2 1 34 34 H 1.08997 * 109.46842 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46537 * 299.99845 * 3 2 1 36 36 H 1.09000 * 109.46834 * 54.99905 * 4 2 1 37 37 H 1.08994 * 109.47134 * 295.00120 * 4 2 1 38 38 H 1.08001 * 119.38264 * 359.97438 * 6 5 4 39 39 H 1.07995 * 119.92969 * 180.02562 * 7 6 5 40 40 H 1.07996 * 120.52498 * 180.24743 * 8 7 6 41 41 H 0.97008 * 120.00104 * 354.94363 * 12 10 9 42 42 H 1.08997 * 109.47299 * 180.02562 * 15 13 12 43 43 H 1.08995 * 109.47225 * 300.00825 * 15 13 12 44 44 H 1.09007 * 109.46296 * 60.00116 * 15 13 12 45 45 H 1.08999 * 109.46850 * 185.00167 * 16 13 12 46 46 H 1.09008 * 109.46316 * 304.99575 * 16 13 12 47 47 H 1.08995 * 109.47416 * 300.00858 * 17 16 13 48 48 H 1.09000 * 109.46703 * 60.00362 * 17 16 13 49 49 H 0.97004 * 120.00162 * 0.02562 * 18 17 16 50 50 H 0.97001 * 120.00450 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.0671 -1.9084 0.6060 7 6 5.4161 -2.0421 0.5316 8 6 6.2477 -1.0540 1.0580 9 6 5.6712 0.0595 1.6658 10 6 6.5144 1.1209 2.2368 11 8 7.7211 1.0855 2.0872 12 7 5.9501 2.1325 2.9256 13 6 6.7954 3.1289 3.5881 14 1 7.6981 2.6473 3.9639 15 6 7.1788 4.2198 2.5861 16 6 6.0278 3.7546 4.7544 17 6 5.7531 2.6870 5.8154 18 7 5.0187 3.2863 6.9323 19 6 4.6602 2.5174 8.0073 20 1 4.9193 1.4692 8.0317 21 6 3.9639 3.0851 9.0654 22 7 3.6486 4.3626 9.0358 23 14 3.4743 2.0359 10.5313 24 1 4.5556 2.0714 11.5486 25 1 2.2202 2.5670 11.1233 26 1 3.2579 0.6354 10.0876 27 6 4.2565 0.1545 1.7186 28 8 3.7277 1.1206 2.2407 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6052 -1.7197 1.2953 37 1 1.7515 -0.1582 2.1370 38 1 3.4345 -2.6793 0.1913 39 1 5.8460 -2.9135 0.0603 40 1 7.3215 -1.1520 0.9987 41 1 4.9841 2.2009 2.9828 42 1 7.8081 4.9609 3.0788 43 1 7.7256 3.7740 1.7552 44 1 6.2760 4.7013 2.2102 45 1 6.6220 4.5570 5.1915 46 1 5.0824 4.1585 4.3920 47 1 5.1590 1.8846 5.3782 48 1 6.6985 2.2832 6.1776 49 1 4.7864 4.2279 6.9106 50 1 3.1624 4.7595 9.7754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699140554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:13 Heat of formation + Delta-G solvation = -63.556150 kcal Electronic energy + Delta-G solvation = -29749.995768 eV Core-core repulsion = 25776.619127 eV Total energy + Delta-G solvation = -3973.376641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.69430 -40.58771 -38.27905 -37.90105 -37.20984 -36.06434 -34.37270 -33.55392 -32.16363 -30.86288 -29.46188 -28.21750 -27.91106 -26.16764 -25.69530 -23.76110 -23.38348 -22.44770 -21.64674 -21.15531 -19.35969 -18.93583 -18.59461 -17.88213 -17.22131 -17.07994 -16.78226 -16.67441 -15.84051 -15.74816 -15.54442 -15.47326 -15.27487 -15.18348 -14.90830 -14.51685 -14.31923 -14.01723 -13.64413 -13.50989 -13.42107 -13.30072 -13.12977 -13.06602 -12.92065 -12.91328 -12.86264 -12.43793 -12.29585 -12.11832 -12.05935 -11.97945 -11.93643 -11.74245 -11.68678 -11.16799 -11.00182 -10.97147 -10.86824 -9.99638 -9.07454 -9.04114 -7.99311 -5.29762 -0.53212 0.83286 1.42841 1.46319 1.50539 1.54791 1.76255 2.41502 2.52176 2.75512 3.33217 3.48872 3.58798 3.72433 3.77734 3.86824 3.92824 3.97603 4.01818 4.10037 4.14809 4.24021 4.35219 4.43542 4.49088 4.53271 4.60628 4.68588 4.70143 4.75828 4.81872 4.85568 4.91572 4.95743 4.98844 5.02792 5.14425 5.16874 5.18889 5.23869 5.27396 5.35203 5.40890 5.42108 5.54059 5.66540 5.93411 6.22365 6.62481 6.93442 7.28217 7.35608 8.01256 8.28448 9.24305 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009223 B = 0.003270 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.298998 B = 8560.290457 C = 9914.067942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.144 4.144 4 C 0.084 3.916 5 N -0.484 5.484 6 C 0.185 3.815 7 C -0.243 4.243 8 C 0.073 3.927 9 C -0.330 4.330 10 C 0.567 3.433 11 O -0.593 6.593 12 N -0.711 5.711 13 C 0.146 3.854 14 H 0.071 0.929 15 C -0.149 4.149 16 C -0.117 4.117 17 C 0.160 3.840 18 N -0.744 5.744 19 C -0.254 4.254 20 H 0.069 0.931 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.271 1.271 27 C 0.520 3.480 28 O -0.572 6.572 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.039 0.961 34 H 0.029 0.971 35 H 0.060 0.940 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.229 0.771 39 H 0.197 0.803 40 H 0.148 0.852 41 H 0.412 0.588 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.009 0.991 48 H 0.011 0.989 49 H 0.375 0.625 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -17.469 -27.671 32.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.036 4.036 5 N -0.190 5.190 6 C 0.055 3.945 7 C -0.264 4.264 8 C 0.049 3.951 9 C -0.337 4.337 10 C 0.357 3.643 11 O -0.477 6.477 12 N -0.371 5.371 13 C 0.041 3.959 14 H 0.089 0.911 15 C -0.207 4.207 16 C -0.155 4.155 17 C 0.033 3.967 18 N -0.387 5.387 19 C -0.386 4.386 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.196 1.196 27 C 0.324 3.676 28 O -0.457 6.457 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.245 0.755 39 H 0.214 0.786 40 H 0.165 0.835 41 H 0.258 0.742 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.026 0.974 48 H 0.029 0.971 49 H 0.207 0.793 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.361 -16.993 -27.295 32.328 hybrid contribution -0.452 0.589 1.270 1.471 sum -3.813 -16.404 -26.025 30.999 Atomic orbital electron populations 1.21758 0.92561 1.03464 1.02235 1.21464 0.97531 0.95393 0.97416 1.21847 0.99701 0.97335 1.01274 1.22521 0.75420 1.05181 1.00511 1.45567 1.10119 1.17896 1.45393 1.23270 0.96400 0.87924 0.86901 1.21160 0.91679 1.03325 1.10265 1.22304 1.02317 0.88091 0.82389 1.20880 0.92597 1.02324 1.17918 1.17980 0.86975 0.81574 0.77751 1.90695 1.15436 1.78999 1.62556 1.46757 1.12570 1.26252 1.51523 1.20875 0.93507 0.89421 0.92115 0.91119 1.22049 1.01841 0.97941 0.98869 1.21872 1.00823 0.98376 0.94425 1.20650 0.93506 0.94873 0.87660 1.42535 1.67320 1.09974 1.18878 1.19608 1.28924 0.93274 0.96764 0.91321 1.25625 1.01666 0.97477 1.01726 1.69822 1.46170 1.12291 1.33530 0.85079 0.77226 0.77991 0.79086 1.21002 1.21512 1.19622 1.16996 0.87490 0.83185 0.79938 1.90641 1.74025 1.32566 1.48496 0.93517 0.91674 0.89890 0.88461 0.94145 0.95162 0.92138 0.84071 0.90549 0.75512 0.78600 0.83460 0.74155 0.89925 0.92949 0.92173 0.89452 0.91658 0.97351 0.97073 0.79259 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.19 71.98 0.66 -0.53 16 2 C -0.10 -1.06 3.13 -10.79 -0.03 -1.10 16 3 C -0.14 -2.79 7.92 71.98 0.57 -2.22 16 4 C 0.08 0.97 4.92 86.38 0.43 1.40 16 5 N -0.48 -7.29 2.47 -649.70 -1.60 -8.89 16 6 C 0.19 1.04 10.25 83.56 0.86 1.89 16 7 C -0.24 -1.87 9.99 21.99 0.22 -1.65 16 8 C 0.07 1.35 9.70 22.83 0.22 1.58 16 9 C -0.33 -9.27 5.92 -19.79 -0.12 -9.38 16 10 C 0.57 20.44 7.69 86.57 0.67 21.11 16 11 O -0.59 -23.55 16.07 -4.17 -0.07 -23.61 16 12 N -0.71 -26.13 4.44 -446.13 -1.98 -28.11 16 13 C 0.15 5.16 2.54 44.99 0.11 5.28 16 14 H 0.07 2.67 7.65 -2.39 -0.02 2.66 16 15 C -0.15 -4.41 9.48 71.98 0.68 -3.73 16 16 C -0.12 -4.49 4.87 30.59 0.15 -4.34 16 17 C 0.16 7.59 6.15 86.38 0.53 8.12 16 18 N -0.74 -42.24 5.60 -343.47 -1.92 -44.16 16 19 C -0.25 -15.50 9.99 84.03 0.84 -14.66 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 22 N -0.97 -61.89 13.06 21.65 0.28 -61.60 16 23 Si 0.98 48.26 29.55 68.60 2.03 50.28 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 27 C 0.52 13.84 6.00 85.16 0.51 14.35 16 28 O -0.57 -19.46 11.43 -4.96 -0.06 -19.51 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.04 0.99 7.96 -2.39 -0.02 0.97 16 34 H 0.03 0.72 6.06 -2.39 -0.01 0.70 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.14 0.33 8.00 -2.39 -0.02 0.31 16 37 H 0.08 1.46 7.38 -2.39 -0.02 1.44 16 38 H 0.23 -1.48 8.02 -2.91 -0.02 -1.50 16 39 H 0.20 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.15 2.68 7.71 -2.91 -0.02 2.65 16 41 H 0.41 15.91 5.21 -92.74 -0.48 15.43 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.61 8.09 -2.39 -0.02 1.59 16 44 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.06 2.53 8.14 -2.38 -0.02 2.52 16 47 H 0.01 0.43 7.75 -2.39 -0.02 0.41 16 48 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.38 22.11 7.67 -92.71 -0.71 21.40 16 50 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -87.28 404.30 3.18 -84.10 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -0.26 Total: 39.35 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.76 Total: 12.17 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -5.23 Total: -142.77 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.12 Total: -43.13 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.28 kcal Total: -87.28 3.18 -84.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699140554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.542 kcal (2) G-P(sol) polarization free energy of solvation -87.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds