Wall clock time and date at job start Tue Mar 31 2020 19:33:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09001 * 109.46690 * 2 1
4 4 N 1.46901 * 109.47016 * 239.99897 * 2 1 3
5 5 C 1.46901 * 110.99716 * 84.99945 * 4 2 1
6 6 C 1.50706 * 109.46684 * 179.97438 * 5 4 2
7 7 O 1.21293 * 120.00216 * 359.97438 * 6 5 4
8 8 N 1.34782 * 119.99771 * 180.02562 * 6 5 4
9 9 C 1.37101 * 119.99831 * 179.97438 * 8 6 5
10 10 H 1.08000 * 119.99819 * 359.97438 * 9 8 6
11 11 C 1.38945 * 119.99748 * 180.02562 * 9 8 6
12 12 N 1.31412 * 119.99836 * 180.02562 * 11 9 8
13 13 Si 1.86806 * 120.00071 * 359.97438 * 11 9 8
14 14 H 1.48507 * 109.46746 * 270.00140 * 13 11 9
15 15 H 1.48501 * 109.46880 * 150.00299 * 13 11 9
16 16 H 1.48496 * 109.47232 * 29.99814 * 13 11 9
17 17 C 1.53001 * 109.46935 * 119.99794 * 2 1 3
18 18 H 1.09003 * 110.88499 * 62.35504 * 17 2 1
19 19 C 1.55153 * 111.00541 * 298.47160 * 17 2 1
20 20 C 1.54323 * 102.94270 * 206.42618 * 19 17 2
21 21 N 1.47024 * 107.27111 * 22.18972 * 20 19 17
22 22 C 1.34774 * 125.65050 * 181.10560 * 21 20 19
23 23 O 1.21282 * 120.00136 * 179.97438 * 22 21 20
24 24 C 1.50701 * 119.99841 * 359.97438 * 22 21 20
25 25 C 1.54641 * 111.03564 * 295.33000 * 24 22 21
26 26 C 1.51165 * 104.69266 * 217.36557 * 25 24 22
27 27 C 1.30523 * 111.12552 * 16.38136 * 26 25 24
28 28 C 1.51104 * 111.10158 * 0.03147 * 27 26 25
29 29 C 1.47425 * 108.70365 * 1.05996 * 21 20 19
30 30 H 1.09003 * 109.47103 * 305.38005 * 1 2 3
31 31 H 1.08999 * 109.46926 * 65.38423 * 1 2 3
32 32 H 1.08998 * 109.47161 * 185.38054 * 1 2 3
33 33 H 1.00899 * 110.99937 * 208.95453 * 4 2 1
34 34 H 1.09001 * 109.46872 * 59.99987 * 5 4 2
35 35 H 1.08994 * 109.47506 * 300.00043 * 5 4 2
36 36 H 0.97005 * 119.99621 * 0.02562 * 8 6 5
37 37 H 0.97005 * 119.99662 * 180.02562 * 12 11 9
38 38 H 1.08997 * 110.72184 * 324.78534 * 19 17 2
39 39 H 1.09000 * 110.72110 * 87.88311 * 19 17 2
40 40 H 1.08992 * 109.88703 * 141.60962 * 20 19 17
41 41 H 1.09000 * 109.88016 * 262.62401 * 20 19 17
42 42 H 1.09000 * 110.91707 * 59.29708 * 24 22 21
43 43 H 1.08997 * 110.38388 * 336.14715 * 25 24 22
44 44 H 1.09000 * 110.38469 * 98.52398 * 25 24 22
45 45 H 1.08001 * 124.42926 * 196.43325 * 26 25 24
46 46 H 1.08001 * 124.45415 * 180.02562 * 27 26 25
47 47 H 1.08994 * 110.38730 * 224.75239 * 28 27 26
48 48 H 1.09004 * 110.38394 * 102.37624 * 28 27 26
49 49 H 1.08995 * 110.36953 * 217.02970 * 29 21 20
50 50 H 1.09005 * 110.36444 * 94.70890 * 29 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6925 -1.1994
5 6 2.0825 0.2226 -2.3469
6 6 2.5885 -0.5216 -3.5557
7 8 2.8697 -1.6983 -3.4697
8 7 2.7296 0.1208 -4.7322
9 6 3.1905 -0.5561 -5.8318
10 1 3.4408 -1.6039 -5.7551
11 6 3.3364 0.1062 -7.0445
12 7 3.7777 -0.5427 -8.0986
13 14 2.9040 1.9187 -7.1768
14 1 1.4749 2.0603 -7.5550
15 1 3.7558 2.5564 -8.2127
16 1 3.1375 2.5801 -5.8679
17 6 2.0400 -0.7212 1.2493
18 1 1.7240 -1.7644 1.2519
19 6 1.5744 0.0042 2.5393
20 6 2.6615 -0.3816 3.5644
21 7 3.8618 -0.7620 2.8054
22 6 5.0263 -1.1840 3.3369
23 8 5.9545 -1.4728 2.6117
24 6 5.1750 -1.2968 4.8323
25 6 5.0724 0.0911 5.5066
26 6 6.0772 0.0444 6.6349
27 6 6.9162 -0.9429 6.4771
28 6 6.6119 -1.7192 5.2170
29 6 3.5804 -0.6066 1.3667
30 1 -0.3633 0.5950 0.8379
31 1 -0.3633 0.4281 -0.9343
32 1 -0.3633 -1.0231 0.0964
33 1 2.9173 -1.1205 -1.0287
34 1 2.7589 1.0462 -2.1181
35 1 1.0871 0.6163 -2.5525
36 1 2.5058 1.0621 -4.8006
37 1 3.8799 -0.0801 -8.9451
38 1 1.5525 1.0835 2.3883
39 1 0.5965 -0.3595 2.8547
40 1 2.8838 0.4699 4.2073
41 1 2.3199 -1.2225 4.1681
42 1 4.4402 -1.9878 5.2454
43 1 5.3332 0.8775 4.7984
44 1 4.0676 0.2495 5.8982
45 1 6.0975 0.7368 7.4635
46 1 7.7222 -1.1745 7.1577
47 1 6.6533 -2.7908 5.4118
48 1 7.3118 -1.4489 4.4262
49 1 4.0644 -1.4002 0.7975
50 1 3.9158 0.3702 1.0179
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699939891.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:32
Heat of formation + Delta-G solvation = -74.945134 kcal
Electronic energy + Delta-G solvation = -28794.657604 eV
Core-core repulsion = 24820.787100 eV
Total energy + Delta-G solvation = -3973.870504 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.60415 -40.42276 -39.62199 -38.34240 -37.00316 -35.97423 -33.80503 -33.30888
-31.12108 -30.61168 -29.49838 -28.98724 -28.15926 -25.78085 -25.03874 -22.85764
-22.46718 -21.36087 -21.02164 -20.34553 -20.02343 -19.67704 -18.40339 -18.05387
-17.31806 -17.12439 -16.80497 -16.62439 -16.27421 -16.09012 -15.66464 -15.26098
-15.01456 -14.73688 -14.52330 -14.44655 -14.10193 -14.06519 -13.81232 -13.58851
-13.39383 -13.24486 -13.19175 -13.02015 -12.93999 -12.71487 -12.59921 -12.43410
-12.35094 -12.21476 -12.11725 -12.00593 -11.87920 -11.68662 -11.53528 -11.47478
-10.94364 -10.45812 -10.27029 -9.83256 -9.73448 -9.34034 -8.43057 -6.04410
1.28453 1.34282 1.34509 1.43420 1.50116 1.88037 1.93296 2.21700
2.69360 3.12672 3.26134 3.37063 3.50395 3.58343 3.61293 3.81581
3.86781 4.12878 4.16958 4.24259 4.31726 4.35229 4.38262 4.39920
4.46244 4.53391 4.56428 4.62798 4.68580 4.72476 4.76873 4.82829
4.88771 4.94238 5.01119 5.03863 5.05108 5.14150 5.15344 5.27042
5.35879 5.50541 5.53267 5.59810 5.89752 5.96928 6.08739 6.34775
6.44778 6.57797 6.85912 7.04902 7.37284 7.94435 8.74748
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.017050 B = 0.002134 C = 0.002002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1641.846872 B =13115.880090 C =13979.179954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.096 3.904
3 H 0.061 0.939
4 N -0.686 5.686
5 C 0.063 3.937
6 C 0.446 3.554
7 O -0.616 6.616
8 N -0.590 5.590
9 C -0.330 4.330
10 H 0.053 0.947
11 C -0.017 4.017
12 N -0.935 5.935
13 Si 0.968 3.032
14 H -0.254 1.254
15 H -0.275 1.275
16 H -0.231 1.231
17 C -0.092 4.092
18 H 0.084 0.916
19 C -0.112 4.112
20 C 0.091 3.909
21 N -0.614 5.614
22 C 0.526 3.474
23 O -0.593 6.593
24 C -0.106 4.106
25 C -0.085 4.085
26 C -0.164 4.164
27 C -0.173 4.173
28 C -0.096 4.096
29 C 0.100 3.900
30 H 0.088 0.912
31 H 0.050 0.950
32 H 0.051 0.949
33 H 0.339 0.661
34 H 0.074 0.926
35 H 0.117 0.883
36 H 0.390 0.610
37 H 0.279 0.721
38 H 0.094 0.906
39 H 0.111 0.889
40 H 0.095 0.905
41 H 0.088 0.912
42 H 0.128 0.872
43 H 0.067 0.933
44 H 0.110 0.890
45 H 0.150 0.850
46 H 0.140 0.860
47 H 0.077 0.923
48 H 0.062 0.938
49 H 0.045 0.955
50 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.844 10.593 35.155 37.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.013 4.013
3 H 0.079 0.921
4 N -0.320 5.320
5 C -0.069 4.069
6 C 0.234 3.766
7 O -0.501 6.501
8 N -0.232 5.232
9 C -0.460 4.460
10 H 0.071 0.929
11 C -0.216 4.216
12 N -0.575 5.575
13 Si 0.787 3.213
14 H -0.179 1.179
15 H -0.200 1.200
16 H -0.155 1.155
17 C -0.112 4.112
18 H 0.102 0.898
19 C -0.150 4.150
20 C -0.030 4.030
21 N -0.347 5.347
22 C 0.316 3.684
23 O -0.474 6.474
24 C -0.127 4.127
25 C -0.122 4.122
26 C -0.182 4.182
27 C -0.190 4.190
28 C -0.133 4.133
29 C -0.023 4.023
30 H 0.107 0.893
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.158 0.842
34 H 0.091 0.909
35 H 0.135 0.865
36 H 0.226 0.774
37 H 0.089 0.911
38 H 0.113 0.887
39 H 0.130 0.870
40 H 0.113 0.887
41 H 0.106 0.894
42 H 0.146 0.854
43 H 0.085 0.915
44 H 0.128 0.872
45 H 0.168 0.832
46 H 0.158 0.842
47 H 0.095 0.905
48 H 0.081 0.919
49 H 0.063 0.937
50 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -6.680 9.374 34.488 36.358
hybrid contribution 1.351 0.597 -1.173 1.886
sum -5.329 9.971 33.314 35.181
Atomic orbital electron populations
1.21803 0.92748 1.02370 1.02413 1.21638 0.97160 0.95786 0.86726
0.92109 1.60202 1.34516 1.32927 1.04315 1.21681 1.02979 0.93693
0.88578 1.21076 0.82304 0.87954 0.85287 1.90549 1.55371 1.18770
1.85399 1.42028 1.60550 1.11772 1.08853 1.19002 1.42529 0.96013
0.88411 0.92930 1.26174 0.96356 1.05270 0.93794 1.69815 1.46207
1.39676 1.01809 0.85328 0.79544 0.76179 0.80222 1.17857 1.19987
1.15477 1.22447 0.91832 1.01313 0.95598 0.89808 1.22733 0.99036
1.01807 0.91439 1.22479 0.83427 1.01860 0.95220 1.48559 1.13291
1.65158 1.07681 1.20799 0.80588 0.75437 0.91562 1.90711 1.40779
1.52003 1.63935 1.22165 1.00226 1.01211 0.89061 1.21385 1.01320
0.93780 0.95696 1.23463 0.96851 0.98879 0.98990 1.23394 1.00549
0.97901 0.97203 1.21311 0.94740 1.00829 0.96462 1.22296 0.96988
1.00653 0.82342 0.89329 0.93130 0.92954 0.84242 0.90867 0.86464
0.77413 0.91112 0.88718 0.87026 0.88673 0.89375 0.85435 0.91466
0.87208 0.83226 0.84197 0.90471 0.91945 0.93676 0.91741
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.09 9.14 71.98 0.66 -1.44 16
2 C 0.10 1.79 2.17 44.92 0.10 1.89 16
3 H 0.06 0.98 7.76 -2.39 -0.02 0.96 16
4 N -0.69 -20.33 5.93 -495.55 -2.94 -23.27 16
5 C 0.06 1.96 5.96 85.56 0.51 2.47 16
6 C 0.45 20.85 7.82 87.66 0.69 21.53 16
7 O -0.62 -35.70 15.78 -3.07 -0.05 -35.74 16
8 N -0.59 -28.63 5.09 -306.97 -1.56 -30.19 16
9 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16
10 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16
11 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16
12 N -0.93 -57.52 13.96 21.66 0.30 -57.22 16
13 Si 0.97 39.40 27.74 68.60 1.90 41.30 16
14 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16
15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
16 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16
17 C -0.09 -1.51 2.68 -9.40 -0.03 -1.53 16
18 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
19 C -0.11 -0.84 5.45 31.78 0.17 -0.67 16
20 C 0.09 0.79 6.11 86.73 0.53 1.32 16
21 N -0.61 -11.65 3.33 -811.80 -2.70 -14.35 16
22 C 0.53 12.57 7.12 87.66 0.62 13.19 16
23 O -0.59 -20.85 15.79 -3.04 -0.05 -20.90 16
24 C -0.11 -1.62 2.97 -10.42 -0.03 -1.65 16
25 C -0.08 -0.87 5.15 30.55 0.16 -0.72 16
26 C -0.16 -1.67 10.78 26.29 0.28 -1.38 16
27 C -0.17 -2.23 10.78 26.27 0.28 -1.94 16
28 C -0.10 -1.72 6.16 30.53 0.19 -1.53 16
29 C 0.10 2.24 5.63 86.86 0.49 2.73 16
30 H 0.09 0.78 7.54 -2.39 -0.02 0.76 16
31 H 0.05 0.88 7.35 -2.39 -0.02 0.86 16
32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
33 H 0.34 11.47 6.93 -89.69 -0.62 10.85 16
34 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16
35 H 0.12 3.01 7.36 -2.39 -0.02 2.99 16
36 H 0.39 15.54 5.76 -92.70 -0.53 15.01 16
37 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16
38 H 0.09 0.50 8.04 -2.39 -0.02 0.48 16
39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16
40 H 0.10 0.43 6.52 -2.39 -0.02 0.41 16
41 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
42 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16
43 H 0.07 0.88 7.88 -2.39 -0.02 0.87 16
44 H 0.11 0.46 7.29 -2.39 -0.02 0.45 16
45 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16
46 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16
47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
48 H 0.06 1.52 7.01 -2.39 -0.02 1.51 16
49 H 0.04 1.35 7.60 -2.39 -0.02 1.33 16
50 H 0.06 1.45 8.01 -2.38 -0.02 1.43 16
Total: -1.00 -88.38 395.68 0.58 -87.79
By element:
Atomic # 1 Polarization: 40.16 SS G_CDS: -0.27 Total: 39.90 kcal
Atomic # 6 Polarization: 6.74 SS G_CDS: 5.94 Total: 12.68 kcal
Atomic # 7 Polarization: -118.13 SS G_CDS: -6.90 Total: -125.03 kcal
Atomic # 8 Polarization: -56.55 SS G_CDS: -0.10 Total: -56.64 kcal
Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal
Total: -88.38 0.58 -87.79 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699939891.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.849 kcal
(2) G-P(sol) polarization free energy of solvation -88.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.530 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds