Wall clock time and date at job start Tue Mar 31 2020 19:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 N 1.46904 * 109.47369 * 240.00042 * 2 1 3 5 5 C 1.46903 * 110.99768 * 85.00033 * 4 2 1 6 6 C 1.50700 * 109.47111 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99762 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00101 * 180.02562 * 6 5 4 9 9 C 1.37097 * 120.00112 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99577 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99817 * 179.97438 * 9 8 6 12 12 N 1.31402 * 120.00111 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99737 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47506 * 59.99749 * 13 11 9 15 15 H 1.48497 * 109.47220 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47161 * 299.99660 * 13 11 9 17 17 C 1.52996 * 109.47143 * 120.00415 * 2 1 3 18 18 H 1.09001 * 110.88642 * 57.57223 * 17 2 1 19 19 C 1.55159 * 111.00679 * 181.45701 * 17 2 1 20 20 C 1.54321 * 102.94270 * 153.57736 * 19 17 2 21 21 N 1.47020 * 107.27200 * 337.80143 * 20 19 17 22 22 C 1.34779 * 125.65160 * 178.90696 * 21 20 19 23 23 O 1.21278 * 120.00389 * 180.02562 * 22 21 20 24 24 C 1.50701 * 119.99557 * 0.02657 * 22 21 20 25 25 C 1.54638 * 111.03556 * 179.97438 * 24 22 21 26 26 C 1.51106 * 104.82455 * 93.38216 * 25 24 22 27 27 C 1.30798 * 110.94366 * 16.48954 * 26 25 24 28 28 C 1.51098 * 111.15292 * 359.95455 * 27 26 25 29 29 C 1.47426 * 108.70111 * 359.17350 * 21 20 19 30 30 H 1.08997 * 109.47548 * 299.99937 * 1 2 3 31 31 H 1.09010 * 109.46933 * 59.99764 * 1 2 3 32 32 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 33 33 H 1.00897 * 110.99812 * 321.05143 * 4 2 1 34 34 H 1.09001 * 109.47490 * 300.00352 * 5 4 2 35 35 H 1.09001 * 109.47064 * 60.00076 * 5 4 2 36 36 H 0.97007 * 119.99519 * 359.97438 * 8 6 5 37 37 H 0.97007 * 120.00067 * 180.02562 * 12 11 9 38 38 H 1.08996 * 110.72090 * 35.20730 * 19 17 2 39 39 H 1.09004 * 110.86955 * 272.00601 * 19 17 2 40 40 H 1.09008 * 109.87857 * 218.39074 * 20 19 17 41 41 H 1.08992 * 110.01516 * 97.29660 * 20 19 17 42 42 H 1.09000 * 110.91662 * 56.03813 * 24 22 21 43 43 H 1.09002 * 110.38811 * 212.25147 * 25 24 22 44 44 H 1.09000 * 110.38511 * 334.51730 * 25 24 22 45 45 H 1.08002 * 124.44711 * 196.45494 * 26 25 24 46 46 H 1.08002 * 124.39680 * 179.97438 * 27 26 25 47 47 H 1.09008 * 110.38603 * 224.78131 * 28 27 26 48 48 H 1.08997 * 110.48409 * 102.45546 * 28 27 26 49 49 H 1.09008 * 110.36520 * 142.73853 * 29 21 20 50 50 H 1.09002 * 110.36851 * 265.05812 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 8 2.8679 -1.6986 -3.4702 8 7 2.7284 0.1207 -4.7325 9 6 3.1872 -0.5566 -5.8327 10 1 3.4361 -1.6048 -5.7564 11 6 3.3320 0.1055 -7.0456 12 7 3.0287 1.3807 -7.1384 13 14 3.9579 -0.8171 -8.5444 14 1 3.0360 -1.9389 -8.8558 15 1 4.0220 0.1081 -9.7042 16 1 5.3140 -1.3539 -8.2646 17 6 2.0400 -0.7213 1.2492 18 1 1.6547 -1.7400 1.2942 19 6 3.5906 -0.7103 1.3037 20 6 3.8840 -0.8152 2.8151 21 7 2.6858 -0.3456 3.5260 22 6 2.5336 -0.3008 4.8644 23 8 1.4967 0.1067 5.3435 24 6 3.6519 -0.7572 5.7656 25 6 3.2575 -0.6170 7.2543 26 6 2.6957 -1.9673 7.6342 27 6 3.0324 -2.8774 6.7571 28 6 3.8716 -2.2834 5.6498 29 6 1.6761 0.0622 2.5323 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.4496 -1.4978 -1.4101 34 1 1.0872 0.6165 -2.5525 35 1 2.7589 1.0463 -2.1181 36 1 2.5044 1.0620 -4.8010 37 1 3.1294 1.8429 -7.9853 38 1 3.9841 0.2217 0.8981 39 1 4.0040 -1.5663 0.7703 40 1 4.7372 -0.1870 3.0715 41 1 4.0924 -1.8507 3.0837 42 1 4.5711 -0.2118 5.5518 43 1 4.1344 -0.3867 7.8594 44 1 2.4997 0.1571 7.3750 45 1 2.0969 -2.1545 8.5132 46 1 2.7472 -3.9173 6.8168 47 1 3.5299 -2.6437 4.6794 48 1 4.9238 -2.5278 5.7957 49 1 0.6770 -0.2099 2.8730 50 1 1.7361 1.1350 2.3488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699939893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:36 Heat of formation + Delta-G solvation = -55.398122 kcal Electronic energy + Delta-G solvation = -28661.246220 eV Core-core repulsion = 24688.223338 eV Total energy + Delta-G solvation = -3973.022882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78928 -39.02007 -38.19378 -37.28866 -35.93901 -33.92678 -32.16058 -31.22073 -30.35492 -29.90500 -28.60619 -27.93649 -26.43982 -24.76773 -23.79241 -21.99940 -21.82858 -20.37935 -19.33428 -19.20549 -18.98307 -17.90414 -17.40069 -16.70661 -16.37241 -15.93016 -15.68706 -15.35675 -14.82758 -14.57131 -14.21041 -13.95191 -13.74682 -13.66376 -13.60558 -13.30814 -12.91447 -12.73410 -12.70038 -12.58642 -12.51572 -12.20328 -12.14183 -11.83491 -11.64566 -11.58972 -11.55586 -11.47817 -11.24969 -11.05358 -10.96289 -10.87047 -10.65077 -10.45496 -10.22525 -10.03002 -9.51277 -9.19487 -8.84521 -8.47805 -8.05849 -7.96944 -6.42901 -3.83810 1.95119 2.41565 2.73218 3.18978 3.24871 3.29078 3.89614 3.98508 4.12151 4.18509 4.26159 4.30708 4.47035 4.59274 4.77997 4.88488 4.92710 5.01122 5.10013 5.14140 5.19411 5.24195 5.25320 5.25758 5.30526 5.33072 5.41148 5.43365 5.53530 5.59211 5.65839 5.66544 5.74207 5.77186 5.79429 5.87004 5.99395 6.04220 6.09084 6.15133 6.20453 6.25051 6.29206 6.55170 7.21012 7.30728 7.53673 7.64924 7.96049 8.04860 8.59978 9.16566 9.53135 10.04537 10.74694 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.001824 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.190494 B =15345.046676 C =15779.141916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.080 0.920 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.086 4.086 18 H 0.084 0.916 19 C -0.111 4.111 20 C 0.093 3.907 21 N -0.616 5.616 22 C 0.538 3.462 23 O -0.540 6.540 24 C -0.114 4.114 25 C -0.089 4.089 26 C -0.155 4.155 27 C -0.177 4.177 28 C -0.090 4.090 29 C 0.111 3.889 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -1.563 25.197 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.016 4.016 3 H 0.098 0.902 4 N -0.292 5.292 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.106 4.106 18 H 0.102 0.898 19 C -0.149 4.149 20 C -0.030 4.030 21 N -0.350 5.350 22 C 0.327 3.673 23 O -0.417 6.417 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.172 4.172 27 C -0.195 4.195 28 C -0.127 4.127 29 C -0.011 4.011 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.693 -1.912 25.564 25.645 hybrid contribution -0.772 0.302 -1.155 1.422 sum -0.079 -1.610 24.409 24.462 Atomic orbital electron populations 1.22575 0.97291 1.02411 1.02312 1.21475 0.92366 0.97730 0.90056 0.90229 1.60126 1.57615 1.09096 1.02384 1.21690 0.99885 0.95683 0.90874 1.19819 0.85154 0.88232 0.84187 1.90519 1.55351 1.16289 1.84642 1.41866 1.57780 1.12437 1.07960 1.19648 1.40140 0.96400 0.86777 0.87985 1.25258 0.97644 0.95776 0.99254 1.69601 1.48594 1.08845 1.27266 0.85918 0.79447 0.78815 0.80037 1.19935 1.20989 1.19888 1.22254 0.96066 0.99797 0.92436 0.89763 1.22521 0.95454 1.04372 0.92582 1.22291 0.87612 0.99640 0.93445 1.48485 1.17285 1.64427 1.04841 1.20045 0.88699 0.77621 0.80925 1.90682 1.29434 1.47237 1.74340 1.22143 0.97790 0.97973 0.95637 1.21312 1.01210 0.97405 0.92704 1.23326 0.99400 0.95006 0.99512 1.23290 0.99947 0.99450 0.96784 1.21374 1.00480 0.91874 0.98978 1.22230 0.92544 0.98948 0.87426 0.92078 0.92320 0.92233 0.82997 0.93888 0.89700 0.77480 0.91822 0.90415 0.88925 0.91444 0.91145 0.87686 0.90013 0.89330 0.85679 0.85686 0.90441 0.89525 0.90534 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 9.01 37.16 0.33 -1.56 16 2 C 0.09 1.04 2.10 -67.71 -0.14 0.90 16 3 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 4 N -0.66 -9.63 5.57 -107.99 -0.60 -10.23 16 5 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 6 C 0.44 10.07 7.82 -10.98 -0.09 9.98 16 7 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 8 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 9 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 13 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.09 -0.85 2.75 -88.59 -0.24 -1.10 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.11 -1.07 6.13 -24.90 -0.15 -1.22 16 20 C 0.09 0.75 6.17 -3.07 -0.02 0.73 16 21 N -0.62 -6.26 3.31 -170.66 -0.56 -6.82 16 22 C 0.54 6.15 7.14 -10.98 -0.08 6.07 16 23 O -0.54 -8.12 15.79 5.56 0.09 -8.03 16 24 C -0.11 -0.94 2.91 -90.05 -0.26 -1.20 16 25 C -0.09 -0.73 6.14 -26.82 -0.16 -0.90 16 26 C -0.15 -1.28 10.80 -35.77 -0.39 -1.66 16 27 C -0.18 -1.41 10.78 -35.78 -0.39 -1.79 16 28 C -0.09 -0.65 5.84 -26.83 -0.16 -0.81 16 29 C 0.11 1.13 5.55 -2.65 -0.01 1.12 16 30 H 0.06 0.55 7.46 -51.93 -0.39 0.16 16 31 H 0.06 0.63 7.45 -51.92 -0.39 0.24 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.35 5.44 8.17 -39.29 -0.32 5.12 16 34 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 35 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 36 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 38 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 41 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 42 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.88 7.01 -51.93 -0.36 0.52 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.08 0.59 6.04 -51.92 -0.31 0.28 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.85 7.97 -51.92 -0.41 0.43 16 50 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -32.50 399.98 -9.53 -42.03 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.19 Total: 12.65 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.03 Total: 1.48 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.50 Total: -54.68 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.18 Total: -23.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.50 -9.53 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699939893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.367 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds