Wall clock time and date at job start Tue Mar 31 2020 19:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 N 1.46904 * 109.47369 * 240.00042 * 2 1 3 5 5 C 1.46903 * 110.99768 * 85.00033 * 4 2 1 6 6 C 1.50700 * 109.47111 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99762 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00101 * 180.02562 * 6 5 4 9 9 C 1.37097 * 120.00112 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99577 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99817 * 179.97438 * 9 8 6 12 12 N 1.31402 * 120.00111 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99737 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47506 * 59.99749 * 13 11 9 15 15 H 1.48497 * 109.47220 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47161 * 299.99660 * 13 11 9 17 17 C 1.52996 * 109.47143 * 120.00415 * 2 1 3 18 18 H 1.09001 * 110.88642 * 57.57223 * 17 2 1 19 19 C 1.55159 * 111.00679 * 181.45701 * 17 2 1 20 20 C 1.54321 * 102.94270 * 153.57736 * 19 17 2 21 21 N 1.47020 * 107.27200 * 337.80143 * 20 19 17 22 22 C 1.34779 * 125.65160 * 178.90696 * 21 20 19 23 23 O 1.21278 * 120.00389 * 180.02562 * 22 21 20 24 24 C 1.50701 * 119.99557 * 0.02657 * 22 21 20 25 25 C 1.54638 * 111.03556 * 179.97438 * 24 22 21 26 26 C 1.51106 * 104.82455 * 93.38216 * 25 24 22 27 27 C 1.30798 * 110.94366 * 16.48954 * 26 25 24 28 28 C 1.51098 * 111.15292 * 359.95455 * 27 26 25 29 29 C 1.47426 * 108.70111 * 359.17350 * 21 20 19 30 30 H 1.08997 * 109.47548 * 299.99937 * 1 2 3 31 31 H 1.09010 * 109.46933 * 59.99764 * 1 2 3 32 32 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 33 33 H 1.00897 * 110.99812 * 321.05143 * 4 2 1 34 34 H 1.09001 * 109.47490 * 300.00352 * 5 4 2 35 35 H 1.09001 * 109.47064 * 60.00076 * 5 4 2 36 36 H 0.97007 * 119.99519 * 359.97438 * 8 6 5 37 37 H 0.97007 * 120.00067 * 180.02562 * 12 11 9 38 38 H 1.08996 * 110.72090 * 35.20730 * 19 17 2 39 39 H 1.09004 * 110.86955 * 272.00601 * 19 17 2 40 40 H 1.09008 * 109.87857 * 218.39074 * 20 19 17 41 41 H 1.08992 * 110.01516 * 97.29660 * 20 19 17 42 42 H 1.09000 * 110.91662 * 56.03813 * 24 22 21 43 43 H 1.09002 * 110.38811 * 212.25147 * 25 24 22 44 44 H 1.09000 * 110.38511 * 334.51730 * 25 24 22 45 45 H 1.08002 * 124.44711 * 196.45494 * 26 25 24 46 46 H 1.08002 * 124.39680 * 179.97438 * 27 26 25 47 47 H 1.09008 * 110.38603 * 224.78131 * 28 27 26 48 48 H 1.08997 * 110.48409 * 102.45546 * 28 27 26 49 49 H 1.09008 * 110.36520 * 142.73853 * 29 21 20 50 50 H 1.09002 * 110.36851 * 265.05812 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 8 2.8679 -1.6986 -3.4702 8 7 2.7284 0.1207 -4.7325 9 6 3.1872 -0.5566 -5.8327 10 1 3.4361 -1.6048 -5.7564 11 6 3.3320 0.1055 -7.0456 12 7 3.0287 1.3807 -7.1384 13 14 3.9579 -0.8171 -8.5444 14 1 3.0360 -1.9389 -8.8558 15 1 4.0220 0.1081 -9.7042 16 1 5.3140 -1.3539 -8.2646 17 6 2.0400 -0.7213 1.2492 18 1 1.6547 -1.7400 1.2942 19 6 3.5906 -0.7103 1.3037 20 6 3.8840 -0.8152 2.8151 21 7 2.6858 -0.3456 3.5260 22 6 2.5336 -0.3008 4.8644 23 8 1.4967 0.1067 5.3435 24 6 3.6519 -0.7572 5.7656 25 6 3.2575 -0.6170 7.2543 26 6 2.6957 -1.9673 7.6342 27 6 3.0324 -2.8774 6.7571 28 6 3.8716 -2.2834 5.6498 29 6 1.6761 0.0622 2.5323 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.4496 -1.4978 -1.4101 34 1 1.0872 0.6165 -2.5525 35 1 2.7589 1.0463 -2.1181 36 1 2.5044 1.0620 -4.8010 37 1 3.1294 1.8429 -7.9853 38 1 3.9841 0.2217 0.8981 39 1 4.0040 -1.5663 0.7703 40 1 4.7372 -0.1870 3.0715 41 1 4.0924 -1.8507 3.0837 42 1 4.5711 -0.2118 5.5518 43 1 4.1344 -0.3867 7.8594 44 1 2.4997 0.1571 7.3750 45 1 2.0969 -2.1545 8.5132 46 1 2.7472 -3.9173 6.8168 47 1 3.5299 -2.6437 4.6794 48 1 4.9238 -2.5278 5.7957 49 1 0.6770 -0.2099 2.8730 50 1 1.7361 1.1350 2.3488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699939893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:35 Heat of formation + Delta-G solvation = -77.056638 kcal Electronic energy + Delta-G solvation = -28662.185404 eV Core-core repulsion = 24688.223338 eV Total energy + Delta-G solvation = -3973.962066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57527 -40.24992 -39.52125 -38.14622 -37.03353 -35.87936 -33.36933 -33.02965 -31.27351 -30.59885 -29.25022 -28.73251 -27.90852 -26.09715 -25.02931 -22.89514 -22.51527 -21.41308 -20.84622 -20.03066 -19.87129 -19.63334 -18.21212 -17.79762 -17.30043 -16.87648 -16.76739 -16.65099 -16.32269 -16.05830 -15.58764 -15.20510 -14.87902 -14.58040 -14.55829 -14.38738 -13.94573 -13.66670 -13.55074 -13.46468 -13.45628 -13.31674 -13.26461 -13.03640 -12.90445 -12.73608 -12.47034 -12.41456 -12.23944 -12.19264 -12.12083 -12.03653 -11.83343 -11.69193 -11.49074 -11.47111 -10.91396 -10.31005 -9.99329 -9.78563 -9.65949 -9.25428 -8.44734 -5.93231 1.35769 1.41051 1.42975 1.53615 1.58423 1.95495 2.08650 2.30493 2.89940 3.22878 3.39257 3.51510 3.61487 3.66526 3.69462 3.80378 4.01263 4.24750 4.24804 4.31409 4.33556 4.38577 4.40945 4.41923 4.49669 4.56867 4.64026 4.64849 4.68155 4.78846 4.82497 4.84611 4.87094 4.96046 4.99372 5.02864 5.05507 5.16085 5.24673 5.26102 5.35377 5.42599 5.45846 5.63055 5.93372 5.96113 6.15027 6.44229 6.51469 6.62483 7.12283 7.14832 7.59297 8.14489 8.72312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.001824 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.190494 B =15345.046676 C =15779.141916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.088 0.912 4 N -0.668 5.668 5 C 0.067 3.933 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.575 5.575 9 C -0.333 4.333 10 H 0.079 0.921 11 C -0.014 4.014 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.272 1.272 16 H -0.272 1.272 17 C -0.078 4.078 18 H 0.079 0.921 19 C -0.109 4.109 20 C 0.096 3.904 21 N -0.616 5.616 22 C 0.531 3.469 23 O -0.585 6.585 24 C -0.112 4.112 25 C -0.090 4.090 26 C -0.171 4.171 27 C -0.184 4.184 28 C -0.086 4.086 29 C 0.113 3.887 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.344 0.656 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.074 0.926 48 H 0.111 0.889 49 H 0.065 0.935 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -1.395 25.684 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.106 0.894 4 N -0.299 5.299 5 C -0.066 4.066 6 C 0.227 3.773 7 O -0.508 6.508 8 N -0.212 5.212 9 C -0.463 4.463 10 H 0.097 0.903 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.097 4.097 18 H 0.097 0.903 19 C -0.147 4.147 20 C -0.026 4.026 21 N -0.349 5.349 22 C 0.322 3.678 23 O -0.466 6.466 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.189 4.189 27 C -0.202 4.202 28 C -0.123 4.123 29 C -0.010 4.010 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.148 0.852 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.092 0.908 48 H 0.129 0.871 49 H 0.083 0.917 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.751 -1.728 26.055 26.170 hybrid contribution -1.131 0.235 -1.254 1.705 sum 0.620 -1.493 24.801 24.853 Atomic orbital electron populations 1.22521 0.96469 1.02469 1.02697 1.21509 0.92993 0.97834 0.88762 0.89395 1.60122 1.58297 1.08918 1.02599 1.21540 1.00916 0.95394 0.88720 1.20900 0.83301 0.88006 0.85123 1.90489 1.56575 1.18292 1.85462 1.41944 1.58431 1.12590 1.08247 1.19625 1.42169 0.95944 0.88538 0.90273 1.26021 0.97307 0.96614 1.01386 1.69663 1.48679 1.09674 1.28133 0.85004 0.78743 0.77807 0.76883 1.19766 1.19629 1.19689 1.22127 0.96496 0.99307 0.91808 0.90273 1.22471 0.94824 1.03811 0.93626 1.22384 0.87271 1.00922 0.92047 1.48579 1.17798 1.63808 1.04715 1.20665 0.88908 0.76895 0.81369 1.90659 1.31384 1.49378 1.75137 1.22222 0.97356 0.98961 0.94706 1.21337 1.01440 0.96685 0.93254 1.23506 0.99992 0.95253 1.00172 1.23536 0.99851 0.99962 0.96831 1.21411 1.01719 0.90789 0.98424 1.22166 0.92231 0.99129 0.87441 0.90877 0.92687 0.92398 0.83740 0.91922 0.87779 0.77033 0.91367 0.90612 0.89892 0.89453 0.89754 0.85227 0.87880 0.91602 0.85193 0.84841 0.90782 0.87133 0.91694 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 9.01 71.98 0.65 -2.79 16 2 C 0.10 2.02 2.10 44.91 0.09 2.12 16 3 H 0.09 1.69 7.76 -2.39 -0.02 1.67 16 4 N -0.67 -18.74 5.57 -495.57 -2.76 -21.50 16 5 C 0.07 2.12 5.97 85.56 0.51 2.63 16 6 C 0.44 20.11 7.82 87.66 0.69 20.79 16 7 O -0.62 -33.29 15.78 -3.05 -0.05 -33.34 16 8 N -0.57 -28.84 5.29 -306.98 -1.62 -30.46 16 9 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 12 N -0.92 -49.17 13.05 21.66 0.28 -48.88 16 13 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 C -0.08 -1.45 2.75 -9.48 -0.03 -1.47 16 18 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.11 -1.91 6.13 31.78 0.19 -1.71 16 20 C 0.10 1.33 6.17 86.73 0.54 1.86 16 21 N -0.62 -11.60 3.31 -812.22 -2.69 -14.29 16 22 C 0.53 11.64 7.14 87.66 0.63 12.26 16 23 O -0.59 -17.78 15.79 -3.02 -0.05 -17.82 16 24 C -0.11 -1.62 2.91 -10.43 -0.03 -1.65 16 25 C -0.09 -1.38 6.14 30.53 0.19 -1.20 16 26 C -0.17 -2.69 10.80 25.98 0.28 -2.41 16 27 C -0.18 -2.66 10.78 25.98 0.28 -2.38 16 28 C -0.09 -1.04 5.84 30.53 0.18 -0.87 16 29 C 0.11 2.19 5.55 86.78 0.48 2.67 16 30 H 0.07 1.21 7.46 -2.39 -0.02 1.19 16 31 H 0.05 1.08 7.45 -2.38 -0.02 1.06 16 32 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.34 10.50 8.17 -89.70 -0.73 9.77 16 34 H 0.06 1.79 7.44 -2.39 -0.02 1.77 16 35 H 0.10 2.97 8.06 -2.39 -0.02 2.95 16 36 H 0.40 18.89 7.90 -92.70 -0.73 18.16 16 37 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 38 H 0.08 1.37 8.04 -2.39 -0.02 1.35 16 39 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 0.98 6.18 -2.39 -0.01 0.96 16 42 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.33 7.01 -2.39 -0.02 1.31 16 45 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 46 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 47 H 0.07 0.96 6.04 -2.38 -0.01 0.95 16 48 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 1.42 7.97 -2.38 -0.02 1.40 16 50 H 0.07 1.34 8.00 -2.39 -0.02 1.32 16 Total: -1.00 -71.15 399.98 0.56 -70.59 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.51 Total: 41.45 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.93 Total: 9.79 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.79 Total: -115.14 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.10 Total: -51.17 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.15 0.56 -70.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699939893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.468 kcal (2) G-P(sol) polarization free energy of solvation -71.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds