Wall clock time and date at job start Tue Mar 31 2020 18:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32990 * 120.00289 * 2 1 4 4 C 1.47107 * 120.00118 * 172.95569 * 3 2 1 5 5 O 1.21615 * 119.99849 * 354.04298 * 4 3 2 6 6 N 1.34772 * 119.99876 * 174.03929 * 4 3 2 7 7 C 1.47490 * 127.03132 * 180.02562 * 6 4 3 8 8 C 1.54005 * 107.08240 * 205.48176 * 7 6 4 9 9 H 1.09002 * 110.32908 * 239.69884 * 8 7 6 10 10 N 1.46905 * 110.32610 * 117.58324 * 8 7 6 11 11 C 1.46899 * 110.99593 * 86.45411 * 10 8 7 12 12 C 1.50707 * 109.47025 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99537 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00085 * 180.02562 * 12 11 10 15 15 C 1.37097 * 119.99825 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00230 * 359.97438 * 15 14 12 17 17 C 1.38957 * 119.99911 * 179.97438 * 15 14 12 18 18 N 1.31419 * 119.99575 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47270 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.46818 * 299.99652 * 19 17 15 22 22 H 1.48494 * 109.47232 * 59.99652 * 19 17 15 23 23 C 1.54615 * 105.04502 * 358.69662 * 8 7 6 24 24 H 1.09002 * 110.74250 * 96.48686 * 23 8 7 25 25 C 1.53007 * 110.73739 * 219.81530 * 23 8 7 26 26 C 1.48116 * 127.03765 * 0.04825 * 6 4 3 27 27 C 1.50705 * 119.99662 * 180.02562 * 2 1 3 28 28 C 1.52999 * 117.49985 * 1.64676 * 27 2 1 29 29 C 1.53001 * 117.49831 * 293.02125 * 27 2 1 30 30 H 1.09003 * 109.47055 * 89.99418 * 1 2 3 31 31 H 1.09002 * 109.47243 * 209.99739 * 1 2 3 32 32 H 1.09005 * 109.46897 * 329.99854 * 1 2 3 33 33 H 1.08004 * 120.00142 * 352.96535 * 3 2 1 34 34 H 1.08993 * 109.91316 * 86.12148 * 7 6 4 35 35 H 1.09003 * 109.91299 * 324.83604 * 7 6 4 36 36 H 1.00900 * 111.00336 * 322.50151 * 10 8 7 37 37 H 1.09001 * 109.47425 * 60.00380 * 11 10 8 38 38 H 1.08999 * 109.47382 * 299.99792 * 11 10 8 39 39 H 0.96998 * 120.00347 * 359.97438 * 14 12 11 40 40 H 0.96993 * 120.00165 * 0.02562 * 18 17 15 41 41 H 1.08997 * 109.47202 * 59.99808 * 25 23 8 42 42 H 1.09005 * 109.46741 * 179.97438 * 25 23 8 43 43 H 1.09002 * 109.46987 * 299.99662 * 25 23 8 44 44 H 1.09007 * 110.65959 * 259.11807 * 26 6 4 45 45 H 1.09002 * 110.66048 * 22.05488 * 26 6 4 46 46 H 1.09001 * 115.55025 * 147.35902 * 27 2 1 47 47 H 1.08996 * 117.49875 * 359.97438 * 28 27 2 48 48 H 1.08999 * 117.49900 * 145.02405 * 28 27 2 49 49 H 1.08996 * 117.50173 * 214.97721 * 29 27 2 50 50 H 1.09001 * 117.49973 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6348 1.1565 0.1562 5 8 4.2243 0.1196 0.3935 6 7 4.3215 2.3099 0.0363 7 6 5.7796 2.4926 0.1616 8 6 6.0175 3.9533 0.5880 9 1 6.6276 4.4695 -0.1532 10 7 6.6667 4.0012 1.9049 11 6 8.1271 3.9101 1.7755 12 6 8.7569 3.9630 3.1436 13 8 8.0578 4.0670 4.1294 14 7 10.0969 3.8959 3.2717 15 6 10.6697 3.9436 4.5163 16 1 10.0473 4.0353 5.3941 17 6 12.0512 3.8738 4.6484 18 7 12.8085 3.7617 3.5803 19 14 12.8319 3.9395 6.3442 20 1 14.3081 3.8467 6.2135 21 1 12.4725 5.2197 7.0052 22 1 12.3355 2.8037 7.1619 23 6 4.6081 4.5847 0.6607 24 1 4.2310 4.5706 1.6833 25 6 4.6242 6.0111 0.1072 26 6 3.7663 3.6533 -0.2478 27 6 2.2605 -1.3052 -0.0006 28 6 1.4388 -2.5952 -0.0402 29 6 2.1540 -2.1829 1.2481 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6382 2.0836 -0.1145 34 1 6.2614 2.3027 -0.7974 35 1 6.1749 1.8158 0.9192 36 1 6.3113 3.2761 2.5099 37 1 8.4915 4.7441 1.1757 38 1 8.3909 2.9706 1.2898 39 1 10.6559 3.8131 2.4834 40 1 12.4032 3.7280 2.6997 41 1 4.9486 5.9934 -0.9332 42 1 3.6221 6.4357 0.1679 43 1 5.3133 6.6201 0.6924 44 1 3.9043 3.9123 -1.2976 45 1 2.7113 3.6986 0.0226 46 1 3.2127 -1.2981 -0.5310 47 1 0.3533 -2.4999 -0.0653 48 1 1.8503 -3.4371 -0.5969 49 1 3.0359 -2.7536 1.5388 50 1 1.5387 -1.8166 2.0699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:38 Heat of formation + Delta-G solvation = -45.415432 kcal Electronic energy + Delta-G solvation = -28665.775090 eV Core-core repulsion = 24693.185090 eV Total energy + Delta-G solvation = -3972.590000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38114 -40.39389 -39.59628 -38.30002 -36.55425 -35.64358 -34.37473 -33.49580 -33.12754 -30.50707 -28.92865 -27.54293 -27.25056 -25.88529 -24.41170 -23.39904 -23.16416 -21.76911 -21.20699 -20.97195 -20.00551 -19.20215 -18.43688 -17.99699 -17.50723 -16.95597 -16.63569 -16.52343 -16.30485 -15.72816 -15.60479 -15.42024 -15.25806 -14.77498 -14.56394 -14.34378 -14.11481 -13.96517 -13.82516 -13.56646 -13.37376 -13.28536 -13.23628 -13.13619 -12.92270 -12.76526 -12.50584 -12.24243 -12.11143 -11.96544 -11.93456 -11.90676 -11.73465 -11.68348 -11.55405 -11.32949 -10.60837 -10.45649 -10.14298 -10.05856 -9.77634 -9.31482 -8.95578 -6.09512 0.30424 1.50242 1.52613 1.81099 1.93444 1.97842 2.19669 2.38109 2.74865 2.99971 3.13734 3.26442 3.45990 3.51561 3.59496 3.80272 3.98570 4.00590 4.06297 4.07797 4.12647 4.19099 4.29959 4.31555 4.35022 4.43907 4.50598 4.58327 4.64246 4.66218 4.71506 4.77257 4.79003 4.87715 4.91810 5.02821 5.10382 5.13032 5.18528 5.26941 5.31941 5.40488 5.46888 5.57230 5.62210 5.90583 5.96167 6.15673 6.53631 6.54728 6.71152 7.15259 7.40721 7.88755 8.52119 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002218 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.256577 B =12623.640975 C =13996.904034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.005 3.995 3 C -0.238 4.238 4 C 0.549 3.451 5 O -0.584 6.584 6 N -0.620 5.620 7 C 0.077 3.923 8 C 0.082 3.918 9 H 0.114 0.886 10 N -0.665 5.665 11 C 0.063 3.937 12 C 0.440 3.560 13 O -0.619 6.619 14 N -0.586 5.586 15 C -0.411 4.411 16 H 0.072 0.928 17 C -0.043 4.043 18 N -0.915 5.915 19 Si 1.134 2.866 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.090 4.090 24 H 0.072 0.928 25 C -0.131 4.131 26 C 0.106 3.894 27 C -0.142 4.142 28 C -0.162 4.162 29 C -0.170 4.170 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.339 0.661 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.385 0.615 40 H 0.259 0.741 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.122 0.878 48 H 0.100 0.900 49 H 0.081 0.919 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.483 -3.029 -15.824 30.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.003 3.997 3 C -0.258 4.258 4 C 0.343 3.657 5 O -0.467 6.467 6 N -0.352 5.352 7 C -0.048 4.048 8 C -0.029 4.029 9 H 0.132 0.868 10 N -0.296 5.296 11 C -0.069 4.069 12 C 0.228 3.772 13 O -0.505 6.505 14 N -0.225 5.225 15 C -0.540 4.540 16 H 0.090 0.910 17 C -0.241 4.241 18 N -0.554 5.554 19 Si 0.953 3.047 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.110 4.110 24 H 0.090 0.910 25 C -0.189 4.189 26 C -0.016 4.016 27 C -0.160 4.160 28 C -0.199 4.199 29 C -0.207 4.207 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.158 0.842 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.219 0.781 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.140 0.860 48 H 0.118 0.882 49 H 0.099 0.901 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.216 -2.907 -14.191 29.080 hybrid contribution -0.283 -1.124 -1.144 1.629 sum -25.498 -4.031 -15.335 30.026 Atomic orbital electron populations 1.21102 0.87985 1.04551 1.04483 1.22173 0.97158 0.92218 0.88151 1.22403 0.91001 1.00330 1.12050 1.18916 0.89077 0.81469 0.76234 1.90756 1.72196 1.32342 1.51383 1.48755 1.07648 1.08666 1.70156 1.22853 0.82372 0.98176 1.01406 1.22825 0.97041 0.92727 0.90261 0.86773 1.60283 1.02690 1.54597 1.12031 1.21624 0.89437 1.02797 0.93037 1.20880 0.82156 0.82015 0.92150 1.90501 1.62389 1.55825 1.41759 1.41987 1.06139 1.65940 1.08424 1.20516 0.93859 1.53500 0.86142 0.90993 1.27861 0.92732 0.94152 1.09351 1.70970 1.37852 1.47751 0.98868 0.82633 0.75572 0.77914 0.68550 1.19572 1.19660 1.19992 1.22270 0.92721 0.96066 0.99938 0.90979 1.21651 1.02857 0.93191 1.01193 1.22944 0.99438 0.78804 1.00380 1.21409 1.00400 0.90054 1.04180 1.23233 1.00056 0.96948 0.99615 1.22829 1.02902 1.02849 0.92087 0.88345 0.89886 0.89424 0.82375 0.90562 0.93819 0.84201 0.86770 0.92013 0.78072 0.92981 0.90865 0.90706 0.93273 0.88342 0.87711 0.88307 0.86032 0.88206 0.90056 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.49 71.24 0.68 -0.35 16 2 C 0.00 0.08 5.80 -17.61 -0.10 -0.02 16 3 C -0.24 -4.34 9.13 23.43 0.21 -4.13 16 4 C 0.55 14.60 7.75 86.57 0.67 15.27 16 5 O -0.58 -20.46 13.65 -4.08 -0.06 -20.51 16 6 N -0.62 -14.06 3.29 -813.58 -2.68 -16.73 16 7 C 0.08 1.91 6.54 86.53 0.57 2.48 16 8 C 0.08 1.84 2.88 45.80 0.13 1.97 16 9 H 0.11 2.14 7.57 -2.39 -0.02 2.12 16 10 N -0.67 -21.25 5.85 -490.96 -2.87 -24.12 16 11 C 0.06 2.18 6.00 85.56 0.51 2.70 16 12 C 0.44 21.53 7.82 87.66 0.69 22.22 16 13 O -0.62 -35.64 15.78 -3.07 -0.05 -35.69 16 14 N -0.59 -30.57 5.28 -306.98 -1.62 -32.19 16 15 C -0.41 -24.10 9.68 84.04 0.81 -23.28 16 16 H 0.07 4.54 7.16 -2.91 -0.02 4.51 16 17 C -0.04 -2.37 5.50 84.93 0.47 -1.90 16 18 N -0.92 -51.95 13.68 21.67 0.30 -51.65 16 19 Si 1.13 49.59 29.92 68.60 2.05 51.64 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C -0.09 -1.61 3.38 -9.57 -0.03 -1.64 16 24 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 25 C -0.13 -1.79 9.16 71.98 0.66 -1.13 16 26 C 0.11 1.49 6.37 86.74 0.55 2.04 16 27 C -0.14 -3.03 4.35 -11.54 -0.05 -3.08 16 28 C -0.16 -2.40 9.79 30.60 0.30 -2.10 16 29 C -0.17 -3.43 10.23 30.60 0.31 -3.12 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.58 6.37 -2.39 -0.02 0.56 16 32 H 0.09 0.52 8.07 -2.38 -0.02 0.50 16 33 H 0.16 1.77 6.64 -2.91 -0.02 1.75 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.38 7.54 -2.39 -0.02 1.36 16 36 H 0.34 12.44 7.93 -89.69 -0.71 11.72 16 37 H 0.11 3.36 8.08 -2.39 -0.02 3.34 16 38 H 0.06 1.94 8.11 -2.39 -0.02 1.92 16 39 H 0.39 18.36 6.73 -92.71 -0.62 17.74 16 40 H 0.26 14.22 6.77 -92.71 -0.63 13.59 16 41 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 42 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 0.97 8.02 -2.38 -0.02 0.95 16 45 H 0.10 1.02 6.60 -2.39 -0.02 1.01 16 46 H 0.10 2.79 6.24 -2.39 -0.01 2.77 16 47 H 0.12 1.17 6.31 -2.39 -0.02 1.16 16 48 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.52 403.93 1.22 -79.30 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -0.23 Total: 44.03 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.38 Total: 5.93 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.87 Total: -124.70 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -0.10 Total: -56.20 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -80.52 1.22 -79.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.880 kcal (2) G-P(sol) polarization free energy of solvation -80.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds