Wall clock time and date at job start Tue Mar 31 2020 19:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47279 * 2 1 4 4 C 1.53006 * 109.47078 * 119.99597 * 2 1 3 5 5 O 1.42894 * 109.46783 * 65.00017 * 4 2 1 6 6 C 1.35426 * 116.99738 * 180.02562 * 5 4 2 7 7 N 1.32235 * 119.80249 * 359.97360 * 6 5 4 8 8 C 1.31877 * 121.80131 * 180.02562 * 7 6 5 9 9 C 1.38354 * 121.18679 * 359.72201 * 8 7 6 10 10 C 1.38336 * 119.45931 * 0.56297 * 9 8 7 11 11 C 1.39985 * 118.34632 * 359.44873 * 10 9 8 12 12 C 1.47520 * 120.59932 * 180.25484 * 11 10 9 13 13 O 1.21592 * 120.00597 * 179.97438 * 12 11 10 14 14 N 1.34782 * 120.00076 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00413 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.47188 * 325.00040 * 15 14 12 17 17 C 1.52999 * 109.47093 * 85.00004 * 15 14 12 18 18 C 1.53000 * 109.47219 * 205.00189 * 15 14 12 19 19 H 1.08991 * 109.47305 * 299.99912 * 18 15 14 20 20 C 1.52999 * 109.47239 * 59.99905 * 18 15 14 21 21 N 1.46505 * 109.47052 * 179.97438 * 18 15 14 22 22 C 1.36933 * 119.99703 * 155.00248 * 21 18 15 23 23 H 1.07999 * 120.00655 * 359.97438 * 22 21 18 24 24 C 1.38820 * 119.99884 * 179.97438 * 22 21 18 25 25 N 1.31619 * 120.00043 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99756 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47443 * 89.99914 * 26 24 22 28 28 H 1.48504 * 109.47042 * 210.00097 * 26 24 22 29 29 H 1.48499 * 109.47105 * 329.99854 * 26 24 22 30 30 H 1.09003 * 109.47182 * 60.00029 * 1 2 3 31 31 H 1.08994 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46864 * 300.00587 * 1 2 3 33 33 H 1.08997 * 109.47407 * 239.99619 * 2 1 3 34 34 H 1.08993 * 109.46883 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46515 * 300.00042 * 3 2 1 36 36 H 1.08997 * 109.47212 * 59.99499 * 3 2 1 37 37 H 1.08996 * 109.46950 * 305.00077 * 4 2 1 38 38 H 1.08997 * 109.46940 * 185.00352 * 4 2 1 39 39 H 1.08001 * 119.40577 * 180.02562 * 8 7 6 40 40 H 1.08001 * 120.27158 * 180.29150 * 9 8 7 41 41 H 1.08002 * 120.83060 * 179.73053 * 10 9 8 42 42 H 0.97001 * 119.99536 * 0.02562 * 14 12 11 43 43 H 1.09004 * 109.47160 * 180.02562 * 17 15 14 44 44 H 1.08996 * 109.47003 * 299.99765 * 17 15 14 45 45 H 1.08991 * 109.46966 * 60.00372 * 17 15 14 46 46 H 1.09009 * 109.47025 * 59.99737 * 20 18 15 47 47 H 1.08999 * 109.47279 * 179.97438 * 20 18 15 48 48 H 1.09000 * 109.47095 * 300.00599 * 20 18 15 49 49 H 0.97001 * 120.00239 * 334.99674 * 21 18 15 50 50 H 0.96997 * 119.99659 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 -2.0980 1.1921 6 6 2.0383 -2.8825 2.2299 7 7 2.7246 -2.3612 3.2328 8 6 3.1114 -3.0886 4.2625 9 6 2.8092 -4.4364 4.3415 10 6 2.0985 -5.0354 3.3169 11 6 1.6983 -4.2436 2.2341 12 6 0.9333 -4.8299 1.1173 13 8 0.5908 -4.1320 0.1824 14 7 0.6131 -6.1390 1.1337 15 6 -0.1470 -6.7211 0.0249 16 1 -0.8605 -5.9878 -0.3510 17 6 0.8130 -7.1205 -1.0974 18 6 -0.8996 -7.9591 0.5170 19 1 -0.1862 -8.6924 0.8929 20 6 -1.8596 -7.5597 1.6393 21 7 -1.6602 -8.5409 -0.5918 22 6 -1.9858 -9.8709 -0.5751 23 1 -1.6815 -10.4910 0.2550 24 6 -2.7070 -10.4221 -1.6254 25 7 -3.0195 -11.7005 -1.6097 26 14 -3.2340 -9.3493 -3.0610 27 1 -2.1779 -9.3653 -4.1049 28 1 -4.5014 -9.8727 -3.6310 29 1 -3.4416 -7.9569 -2.5883 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6054 -0.2616 2.1370 38 1 3.1263 -0.6442 1.2953 39 1 3.6700 -2.6227 5.0609 40 1 3.1295 -5.0171 5.1939 41 1 1.8543 -6.0868 3.3537 42 1 0.8854 -6.6955 1.8801 43 1 0.2474 -7.5533 -1.9226 44 1 1.3491 -6.2386 -1.4480 45 1 1.5264 -7.8538 -0.7215 46 1 -2.5731 -6.8263 1.2633 47 1 -2.3961 -8.4416 1.9895 48 1 -1.2941 -7.1265 2.4642 49 1 -1.9333 -7.9840 -1.3376 50 1 -3.5237 -12.0855 -2.3434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700424575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:55 Heat of formation + Delta-G solvation = -34.846777 kcal Electronic energy + Delta-G solvation = -29371.433199 eV Core-core repulsion = 25399.301490 eV Total energy + Delta-G solvation = -3972.131709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13553 -39.36577 -38.44525 -36.81056 -35.49998 -34.08571 -33.05694 -31.68157 -30.93237 -29.53076 -28.89308 -27.37657 -26.84033 -24.98229 -23.89210 -23.31511 -22.47420 -20.70326 -20.29861 -20.19130 -18.79836 -18.05773 -17.36778 -17.14037 -16.50259 -15.71153 -15.37009 -15.19135 -14.75084 -14.68034 -14.39593 -14.21262 -13.99375 -13.67010 -13.41785 -13.36519 -13.19810 -12.90354 -12.85354 -12.60353 -12.49409 -12.41528 -12.15858 -11.82936 -11.63744 -11.35401 -11.30197 -11.09654 -10.97019 -10.90992 -10.85088 -10.77606 -10.30005 -10.25992 -10.25314 -9.95624 -9.66709 -9.57314 -9.05815 -8.87953 -8.70352 -7.31094 -5.79135 -3.15352 0.42840 0.94117 2.74486 2.86835 3.17180 3.38600 3.42567 3.46575 3.64192 3.95201 4.39328 4.51399 4.54011 4.58297 4.59830 4.67319 4.78807 4.95387 5.08686 5.19088 5.24022 5.25272 5.31841 5.37963 5.43033 5.43268 5.52633 5.61405 5.64929 5.68921 5.70901 5.73738 5.82023 5.95739 6.01075 6.08349 6.10344 6.19593 6.26190 6.29493 6.39237 6.53568 6.68221 6.81905 6.93191 7.04081 7.43689 7.64617 7.95099 8.34939 8.39451 9.16966 9.89670 10.08701 11.38879 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.002776 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.346390 B =10085.489509 C =11645.739761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.070 3.930 5 O -0.265 6.265 6 C 0.373 3.627 7 N -0.548 5.548 8 C 0.163 3.837 9 C -0.222 4.222 10 C -0.009 4.009 11 C -0.206 4.206 12 C 0.562 3.438 13 O -0.516 6.516 14 N -0.715 5.715 15 C 0.135 3.865 16 H 0.085 0.915 17 C -0.154 4.154 18 C 0.174 3.826 19 H 0.059 0.941 20 C -0.165 4.165 21 N -0.742 5.742 22 C -0.242 4.242 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.163 0.837 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.395 0.605 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.060 0.940 48 H 0.038 0.962 49 H 0.362 0.638 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.490 22.347 12.304 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.005 4.005 5 O -0.169 6.169 6 C 0.193 3.807 7 N -0.272 5.272 8 C 0.006 3.994 9 C -0.242 4.242 10 C -0.035 4.035 11 C -0.212 4.212 12 C 0.347 3.653 13 O -0.392 6.392 14 N -0.367 5.367 15 C 0.030 3.970 16 H 0.103 0.897 17 C -0.212 4.212 18 C 0.064 3.936 19 H 0.077 0.923 20 C -0.225 4.225 21 N -0.386 5.386 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.180 0.820 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.230 0.770 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.196 0.804 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.231 23.437 11.332 29.669 hybrid contribution -0.398 -0.428 -0.376 0.695 sum 13.833 23.009 10.956 28.996 Atomic orbital electron populations 1.21825 0.94201 1.03137 1.01352 1.21147 0.97198 0.95585 0.97509 1.21765 1.01054 0.94886 1.02373 1.22823 0.99906 0.78792 0.98988 1.86523 1.71274 1.21361 1.37695 1.19844 0.87432 0.87693 0.85726 1.67497 1.16398 1.39988 1.03325 1.22645 0.92603 0.90775 0.93401 1.21927 1.04317 0.96649 1.01304 1.21696 0.91329 0.99856 0.90582 1.20128 1.09030 0.92529 0.99557 1.17723 0.79758 0.82131 0.85682 1.90829 1.53068 1.60226 1.35071 1.45908 1.57093 1.09130 1.24562 1.21343 0.93259 0.96035 0.86338 0.89688 1.22065 0.99578 1.00692 0.98904 1.20356 0.92459 0.91695 0.89117 0.92272 1.22419 1.00301 1.01326 0.98429 1.42653 1.65803 1.08422 1.21685 1.19006 1.29010 0.83584 1.05577 0.89150 1.24647 1.00382 0.95639 0.98268 1.69694 1.44228 1.10846 1.33273 0.86604 0.78312 0.80280 0.83701 1.20966 1.21742 1.20175 0.92583 0.91215 0.93035 0.89990 0.92465 0.91766 0.92418 0.91631 0.91706 0.81979 0.83858 0.83658 0.77039 0.90777 0.93122 0.92608 0.93486 0.92140 0.94323 0.80439 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.09 37.16 0.34 -1.16 16 2 C -0.10 -0.91 3.16 -90.61 -0.29 -1.20 16 3 C -0.14 -1.00 9.19 37.16 0.34 -0.66 16 4 C 0.07 0.75 4.69 37.16 0.17 0.92 16 5 O -0.26 -3.68 7.75 -39.74 -0.31 -3.99 16 6 C 0.37 4.84 7.51 -16.61 -0.12 4.71 16 7 N -0.55 -5.97 9.21 -12.98 -0.12 -6.09 16 8 C 0.16 1.26 11.17 -17.49 -0.20 1.06 16 9 C -0.22 -1.52 10.09 -39.50 -0.40 -1.92 16 10 C -0.01 -0.07 9.64 -38.89 -0.37 -0.45 16 11 C -0.21 -2.54 5.90 -104.69 -0.62 -3.16 16 12 C 0.56 8.34 7.74 -12.47 -0.10 8.24 16 13 O -0.52 -9.52 14.85 -16.48 -0.24 -9.76 16 14 N -0.71 -9.53 4.34 -54.85 -0.24 -9.76 16 15 C 0.13 2.19 2.21 -67.93 -0.15 2.04 16 16 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 17 C -0.15 -2.52 9.33 37.16 0.35 -2.18 16 18 C 0.17 3.14 2.52 -67.93 -0.17 2.97 16 19 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 20 C -0.16 -2.78 9.33 37.16 0.35 -2.43 16 21 N -0.74 -16.89 4.23 -53.43 -0.23 -17.11 16 22 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 23 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 26 Si 0.88 22.00 27.73 -169.99 -4.71 17.28 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 38 H 0.06 0.65 8.10 -51.93 -0.42 0.22 16 39 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.15 0.88 6.52 -52.49 -0.34 0.54 16 42 H 0.39 4.11 6.49 -40.82 -0.26 3.84 16 43 H 0.07 1.33 7.45 -51.93 -0.39 0.94 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.04 0.53 7.44 -51.93 -0.39 0.14 16 49 H 0.36 8.32 5.45 -40.82 -0.22 8.09 16 50 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -34.04 407.22 -8.39 -42.43 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.33 Total: 8.81 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.12 Total: 0.16 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.19 Total: -61.06 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.55 Total: -13.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.04 -8.39 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700424575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.580 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds