Wall clock time and date at job start Tue Mar 31 2020 19:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47279 * 2 1 4 4 C 1.53006 * 109.47078 * 119.99597 * 2 1 3 5 5 O 1.42894 * 109.46783 * 65.00017 * 4 2 1 6 6 C 1.35426 * 116.99738 * 180.02562 * 5 4 2 7 7 N 1.32235 * 119.80249 * 359.97360 * 6 5 4 8 8 C 1.31877 * 121.80131 * 180.02562 * 7 6 5 9 9 C 1.38354 * 121.18679 * 359.72201 * 8 7 6 10 10 C 1.38336 * 119.45931 * 0.56297 * 9 8 7 11 11 C 1.39985 * 118.34632 * 359.44873 * 10 9 8 12 12 C 1.47520 * 120.59932 * 180.25484 * 11 10 9 13 13 O 1.21592 * 120.00597 * 179.97438 * 12 11 10 14 14 N 1.34782 * 120.00076 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00413 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.47188 * 325.00040 * 15 14 12 17 17 C 1.52999 * 109.47093 * 85.00004 * 15 14 12 18 18 C 1.53000 * 109.47219 * 205.00189 * 15 14 12 19 19 H 1.08991 * 109.47305 * 299.99912 * 18 15 14 20 20 C 1.52999 * 109.47239 * 59.99905 * 18 15 14 21 21 N 1.46505 * 109.47052 * 179.97438 * 18 15 14 22 22 C 1.36933 * 119.99703 * 155.00248 * 21 18 15 23 23 H 1.07999 * 120.00655 * 359.97438 * 22 21 18 24 24 C 1.38820 * 119.99884 * 179.97438 * 22 21 18 25 25 N 1.31619 * 120.00043 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99756 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47443 * 89.99914 * 26 24 22 28 28 H 1.48504 * 109.47042 * 210.00097 * 26 24 22 29 29 H 1.48499 * 109.47105 * 329.99854 * 26 24 22 30 30 H 1.09003 * 109.47182 * 60.00029 * 1 2 3 31 31 H 1.08994 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46864 * 300.00587 * 1 2 3 33 33 H 1.08997 * 109.47407 * 239.99619 * 2 1 3 34 34 H 1.08993 * 109.46883 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46515 * 300.00042 * 3 2 1 36 36 H 1.08997 * 109.47212 * 59.99499 * 3 2 1 37 37 H 1.08996 * 109.46950 * 305.00077 * 4 2 1 38 38 H 1.08997 * 109.46940 * 185.00352 * 4 2 1 39 39 H 1.08001 * 119.40577 * 180.02562 * 8 7 6 40 40 H 1.08001 * 120.27158 * 180.29150 * 9 8 7 41 41 H 1.08002 * 120.83060 * 179.73053 * 10 9 8 42 42 H 0.97001 * 119.99536 * 0.02562 * 14 12 11 43 43 H 1.09004 * 109.47160 * 180.02562 * 17 15 14 44 44 H 1.08996 * 109.47003 * 299.99765 * 17 15 14 45 45 H 1.08991 * 109.46966 * 60.00372 * 17 15 14 46 46 H 1.09009 * 109.47025 * 59.99737 * 20 18 15 47 47 H 1.08999 * 109.47279 * 179.97438 * 20 18 15 48 48 H 1.09000 * 109.47095 * 300.00599 * 20 18 15 49 49 H 0.97001 * 120.00239 * 334.99674 * 21 18 15 50 50 H 0.96997 * 119.99659 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 -2.0980 1.1921 6 6 2.0383 -2.8825 2.2299 7 7 2.7246 -2.3612 3.2328 8 6 3.1114 -3.0886 4.2625 9 6 2.8092 -4.4364 4.3415 10 6 2.0985 -5.0354 3.3169 11 6 1.6983 -4.2436 2.2341 12 6 0.9333 -4.8299 1.1173 13 8 0.5908 -4.1320 0.1824 14 7 0.6131 -6.1390 1.1337 15 6 -0.1470 -6.7211 0.0249 16 1 -0.8605 -5.9878 -0.3510 17 6 0.8130 -7.1205 -1.0974 18 6 -0.8996 -7.9591 0.5170 19 1 -0.1862 -8.6924 0.8929 20 6 -1.8596 -7.5597 1.6393 21 7 -1.6602 -8.5409 -0.5918 22 6 -1.9858 -9.8709 -0.5751 23 1 -1.6815 -10.4910 0.2550 24 6 -2.7070 -10.4221 -1.6254 25 7 -3.0195 -11.7005 -1.6097 26 14 -3.2340 -9.3493 -3.0610 27 1 -2.1779 -9.3653 -4.1049 28 1 -4.5014 -9.8727 -3.6310 29 1 -3.4416 -7.9569 -2.5883 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6054 -0.2616 2.1370 38 1 3.1263 -0.6442 1.2953 39 1 3.6700 -2.6227 5.0609 40 1 3.1295 -5.0171 5.1939 41 1 1.8543 -6.0868 3.3537 42 1 0.8854 -6.6955 1.8801 43 1 0.2474 -7.5533 -1.9226 44 1 1.3491 -6.2386 -1.4480 45 1 1.5264 -7.8538 -0.7215 46 1 -2.5731 -6.8263 1.2633 47 1 -2.3961 -8.4416 1.9895 48 1 -1.2941 -7.1265 2.4642 49 1 -1.9333 -7.9840 -1.3376 50 1 -3.5237 -12.0855 -2.3434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700424575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:54 Heat of formation + Delta-G solvation = -57.691356 kcal Electronic energy + Delta-G solvation = -29372.423815 eV Core-core repulsion = 25399.301490 eV Total energy + Delta-G solvation = -3973.122324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96747 -40.50541 -39.23973 -38.29171 -36.27026 -35.63899 -34.15577 -33.32982 -31.78175 -30.89874 -30.47699 -28.09707 -27.59093 -25.86869 -25.70611 -24.27404 -23.68012 -21.79617 -21.68605 -21.13397 -19.98098 -19.47609 -18.54070 -18.03306 -17.37536 -17.02836 -16.33746 -16.20684 -16.05953 -15.77881 -15.55197 -15.41489 -15.20827 -14.88441 -14.71373 -14.41345 -14.25666 -14.09747 -13.93956 -13.77467 -13.56225 -13.31898 -13.23850 -13.07939 -13.04723 -12.79545 -12.60659 -12.34562 -12.31934 -12.10245 -12.08797 -11.80037 -11.72751 -11.61690 -11.48747 -11.16944 -11.01929 -11.01727 -10.60060 -10.13621 -9.52176 -9.31642 -8.00494 -5.33175 -0.32417 0.25961 1.39820 1.40021 1.46892 1.90054 1.97644 2.05872 2.49059 2.82690 3.25576 3.31713 3.63252 3.67934 3.72121 3.81294 3.83506 3.89473 3.99103 4.10796 4.16276 4.26080 4.30395 4.44968 4.51503 4.54177 4.57871 4.62586 4.73689 4.74593 4.83821 4.90555 4.92250 4.93515 4.96484 5.01302 5.10373 5.15476 5.15892 5.28336 5.30353 5.35540 5.45695 5.48183 5.52367 5.79955 6.23127 6.25375 6.54724 6.77007 7.08184 7.26383 7.84072 8.01615 9.20613 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.002776 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.346390 B =10085.489509 C =11645.739761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.137 4.137 4 C 0.072 3.928 5 O -0.294 6.294 6 C 0.349 3.651 7 N -0.562 5.562 8 C 0.162 3.838 9 C -0.206 4.206 10 C -0.004 4.004 11 C -0.234 4.234 12 C 0.561 3.439 13 O -0.561 6.561 14 N -0.701 5.701 15 C 0.149 3.851 16 H 0.065 0.935 17 C -0.149 4.149 18 C 0.172 3.828 19 H 0.067 0.933 20 C -0.157 4.157 21 N -0.746 5.746 22 C -0.217 4.217 23 H 0.067 0.933 24 C -0.060 4.060 25 N -0.981 5.981 26 Si 0.942 3.058 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.259 1.259 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.201 0.799 40 H 0.185 0.815 41 H 0.172 0.828 42 H 0.412 0.588 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.362 0.638 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.296 24.017 14.658 32.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.194 4.194 4 C -0.003 4.003 5 O -0.199 6.199 6 C 0.169 3.831 7 N -0.286 5.286 8 C 0.006 3.994 9 C -0.225 4.225 10 C -0.030 4.030 11 C -0.240 4.240 12 C 0.349 3.651 13 O -0.440 6.440 14 N -0.355 5.355 15 C 0.043 3.957 16 H 0.083 0.917 17 C -0.207 4.207 18 C 0.064 3.936 19 H 0.085 0.915 20 C -0.216 4.216 21 N -0.390 5.390 22 C -0.348 4.348 23 H 0.085 0.915 24 C -0.251 4.251 25 N -0.632 5.632 26 Si 0.771 3.229 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.184 1.184 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.217 0.783 40 H 0.202 0.798 41 H 0.190 0.810 42 H 0.250 0.750 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.195 0.805 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.078 25.141 13.748 32.857 hybrid contribution -0.831 -0.930 -0.895 1.535 sum 15.247 24.212 12.854 31.367 Atomic orbital electron populations 1.21769 0.94847 1.01125 1.02314 1.21176 0.96640 0.97078 0.96498 1.21725 1.01545 0.92894 1.03212 1.22904 1.00068 0.77953 0.99389 1.86494 1.72011 1.22564 1.38871 1.20093 0.88614 0.88039 0.86319 1.67555 1.16607 1.40734 1.03747 1.23437 0.91504 0.91482 0.92977 1.22387 1.02218 0.96436 1.01492 1.22065 0.90579 1.00785 0.89558 1.20027 1.10846 0.92893 1.00216 1.18158 0.79195 0.81908 0.85856 1.90807 1.54930 1.61258 1.37034 1.45645 1.56492 1.09052 1.24270 1.20938 0.93012 0.94570 0.87142 0.91688 1.21996 0.99500 1.00761 0.98436 1.20532 0.92537 0.92401 0.88144 0.91530 1.22291 0.99975 1.00447 0.98901 1.42685 1.66266 1.06926 1.23122 1.18978 1.26841 0.85030 1.03971 0.91529 1.25342 1.01700 0.96789 1.01286 1.69849 1.46213 1.12822 1.34336 0.85598 0.77440 0.79346 0.80553 1.20536 1.22514 1.18370 0.91565 0.94612 0.92070 0.91585 0.91645 0.90953 0.91514 0.91426 0.91383 0.78259 0.79811 0.81040 0.75025 0.92477 0.93297 0.91451 0.94390 0.93869 0.90570 0.80452 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.09 71.98 0.65 -2.36 16 2 C -0.10 -1.85 3.16 -10.79 -0.03 -1.89 16 3 C -0.14 -1.76 9.19 71.98 0.66 -1.09 16 4 C 0.07 1.56 4.69 71.98 0.34 1.89 16 5 O -0.29 -8.52 7.75 -66.39 -0.51 -9.04 16 6 C 0.35 8.92 7.51 85.13 0.64 9.56 16 7 N -0.56 -11.30 9.21 -308.00 -2.84 -14.13 16 8 C 0.16 1.91 11.17 84.71 0.95 2.85 16 9 C -0.21 -1.86 10.09 22.32 0.23 -1.64 16 10 C 0.00 -0.06 9.64 22.72 0.22 0.16 16 11 C -0.23 -5.48 5.90 -19.91 -0.12 -5.60 16 12 C 0.56 16.48 7.74 86.69 0.67 17.15 16 13 O -0.56 -21.42 14.85 16.81 0.25 -21.17 16 14 N -0.70 -17.63 4.34 -445.71 -1.93 -19.56 16 15 C 0.15 4.73 2.21 44.99 0.10 4.83 16 16 H 0.06 2.37 7.58 -2.39 -0.02 2.36 16 17 C -0.15 -4.78 9.33 71.98 0.67 -4.11 16 18 C 0.17 6.03 2.52 44.99 0.11 6.14 16 19 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 20 C -0.16 -5.02 9.33 71.98 0.67 -4.35 16 21 N -0.75 -33.60 4.23 -322.94 -1.37 -34.96 16 22 C -0.22 -11.88 10.41 84.04 0.87 -11.01 16 23 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 24 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 25 N -0.98 -62.10 13.97 21.65 0.30 -61.79 16 26 Si 0.94 45.94 27.73 68.60 1.90 47.84 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 29 H -0.26 -11.72 6.52 99.48 0.65 -11.07 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.03 0.98 7.82 -2.39 -0.02 0.96 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.07 1.36 8.10 -2.39 -0.02 1.35 16 39 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 41 H 0.17 1.31 6.52 -2.91 -0.02 1.29 16 42 H 0.41 7.37 6.49 -92.71 -0.60 6.76 16 43 H 0.06 2.03 7.45 -2.38 -0.02 2.01 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.86 7.44 -2.39 -0.02 1.84 16 49 H 0.36 16.37 5.45 -92.71 -0.51 15.86 16 50 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -77.82 407.22 2.68 -75.14 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.23 Total: 30.13 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 7.10 Total: 7.55 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -5.83 Total: -130.45 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.26 Total: -30.21 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal Total: -77.82 2.68 -75.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700424575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.449 kcal (2) G-P(sol) polarization free energy of solvation -77.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds