Wall clock time and date at job start Tue Mar 31 2020 19:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 C 1.52998 * 109.46932 * 120.00376 * 2 1 3 5 5 O 1.42901 * 109.47133 * 175.00032 * 4 2 1 6 6 C 1.35433 * 117.00067 * 179.97438 * 5 4 2 7 7 N 1.32229 * 119.79777 * 359.97438 * 6 5 4 8 8 C 1.31882 * 121.79978 * 179.97438 * 7 6 5 9 9 C 1.38361 * 121.18579 * 0.02562 * 8 7 6 10 10 C 1.38341 * 119.45465 * 359.69683 * 9 8 7 11 11 C 1.39982 * 118.34893 * 0.56114 * 10 9 8 12 12 C 1.47530 * 120.59909 * 179.70998 * 11 10 9 13 13 O 1.21588 * 120.00481 * 179.72844 * 12 11 10 14 14 N 1.34774 * 119.99629 * 359.73016 * 12 11 10 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.47256 * 35.00000 * 15 14 12 17 17 C 1.53001 * 109.47277 * 275.00029 * 15 14 12 18 18 C 1.53001 * 109.47056 * 155.00087 * 15 14 12 19 19 H 1.09000 * 109.47570 * 60.00064 * 18 15 14 20 20 C 1.52998 * 109.47014 * 299.99717 * 18 15 14 21 21 N 1.46507 * 109.47045 * 180.02562 * 18 15 14 22 22 C 1.36935 * 119.99742 * 205.00075 * 21 18 15 23 23 H 1.07999 * 120.00083 * 359.97438 * 22 21 18 24 24 C 1.38817 * 119.99986 * 179.97438 * 22 21 18 25 25 N 1.31617 * 119.99464 * 0.27719 * 24 22 21 26 26 Si 1.86800 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47035 * 60.00419 * 26 24 22 28 28 H 1.48503 * 109.46845 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47237 * 300.00175 * 26 24 22 30 30 H 1.08998 * 109.47189 * 300.00255 * 1 2 3 31 31 H 1.09007 * 109.47038 * 60.00021 * 1 2 3 32 32 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47189 * 239.99745 * 2 1 3 34 34 H 1.08998 * 109.47120 * 59.99703 * 3 2 1 35 35 H 1.09005 * 109.47068 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46970 * 300.00021 * 3 2 1 37 37 H 1.08994 * 109.47509 * 54.99499 * 4 2 1 38 38 H 1.09002 * 109.47284 * 294.99353 * 4 2 1 39 39 H 1.07999 * 119.41029 * 179.97438 * 8 7 6 40 40 H 1.07991 * 120.26988 * 179.97438 * 9 8 7 41 41 H 1.08000 * 120.82359 * 180.27818 * 10 9 8 42 42 H 0.96999 * 120.00050 * 359.97438 * 14 12 11 43 43 H 1.08996 * 109.46997 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.46920 * 299.99673 * 17 15 14 45 45 H 1.09000 * 109.46707 * 59.99597 * 17 15 14 46 46 H 1.09005 * 109.47240 * 60.00393 * 20 18 15 47 47 H 1.09005 * 109.47291 * 180.02562 * 20 18 15 48 48 H 1.09000 * 109.47695 * 299.99933 * 20 18 15 49 49 H 0.96999 * 120.00180 * 24.99002 * 21 18 15 50 50 H 0.97001 * 120.00638 * 359.71685 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4641 -0.8239 1.1920 6 6 4.0783 -1.4404 2.2297 7 7 3.3581 -1.9127 3.2330 8 6 3.9149 -2.5200 4.2628 9 6 5.2860 -2.6900 4.3387 10 6 6.0875 -2.2202 3.3137 11 6 5.4748 -1.5739 2.2337 12 6 6.2826 -1.0480 1.1168 13 8 5.7387 -0.4928 0.1818 14 7 7.6234 -1.1829 1.1330 15 6 8.4256 -0.6612 0.0237 16 1 7.9723 0.2558 -0.3526 17 6 8.4814 -1.7000 -1.0981 18 6 9.8438 -0.3646 0.5153 19 1 10.2972 -1.2816 0.8916 20 6 9.7879 0.6743 1.6370 21 7 10.6458 0.1578 -0.5939 22 6 12.0082 0.0208 -0.5776 23 1 12.4915 -0.4719 0.2530 24 6 12.7681 0.5153 -1.6289 25 7 12.1795 1.1205 -2.6385 26 14 14.6267 0.3290 -1.6062 27 1 14.9791 -1.1127 -1.5559 28 1 15.1999 0.9356 -2.8346 29 1 15.1785 1.0156 -0.4106 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 3.1301 1.4423 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6053 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1370 39 1 3.2896 -2.8907 5.0615 40 1 5.7263 -3.1892 5.1891 41 1 7.1597 -2.3449 3.3481 42 1 8.0574 -1.6255 1.8791 43 1 9.0786 -1.3120 -1.9232 44 1 8.9348 -2.6171 -0.7218 45 1 7.4710 -1.9113 -1.4482 46 1 9.1911 0.2861 2.4624 47 1 10.7984 0.8860 1.9869 48 1 9.3346 1.5914 1.2608 49 1 10.2118 0.6005 -1.3399 50 1 11.2144 1.2175 -2.6502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700424577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:58 Heat of formation + Delta-G solvation = -38.431797 kcal Electronic energy + Delta-G solvation = -29330.407149 eV Core-core repulsion = 25358.119981 eV Total energy + Delta-G solvation = -3972.287167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12131 -39.33379 -38.42899 -36.76415 -35.47965 -34.16950 -33.11036 -31.66234 -30.88341 -29.37045 -28.15885 -27.35097 -26.81894 -24.95834 -23.84195 -23.32088 -22.62074 -20.76545 -20.27632 -20.20925 -18.75136 -17.67980 -17.49185 -17.13304 -16.48552 -15.61706 -15.40528 -15.17379 -14.88012 -14.52130 -14.41502 -14.32079 -13.71723 -13.64531 -13.53293 -13.36104 -13.20997 -13.04056 -12.83463 -12.64718 -12.58611 -12.39106 -11.93456 -11.72552 -11.61822 -11.27660 -11.25914 -10.95126 -10.93989 -10.82881 -10.69280 -10.53832 -10.25554 -10.24871 -10.06402 -9.99456 -9.62331 -9.20668 -9.02858 -8.85158 -8.67577 -7.06567 -6.10313 -3.11304 0.43948 0.94767 2.76049 2.88784 3.20171 3.51022 3.54361 3.65733 3.72056 3.96272 4.39910 4.52845 4.55343 4.61965 4.66368 4.69808 4.80567 4.96903 5.11554 5.20951 5.27094 5.29262 5.33773 5.45204 5.49994 5.52690 5.55907 5.63804 5.71186 5.71282 5.72735 5.79980 5.84564 5.97114 6.03139 6.10315 6.15524 6.22620 6.31187 6.34162 6.43679 6.56183 6.73025 6.87176 6.95309 7.05643 7.44856 7.67327 7.78569 8.37979 8.74572 9.20235 10.06533 10.21051 11.37764 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.002538 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.451250 B =11030.008978 C =12388.316216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.070 3.930 5 O -0.264 6.264 6 C 0.373 3.627 7 N -0.547 5.547 8 C 0.162 3.838 9 C -0.222 4.222 10 C -0.009 4.009 11 C -0.206 4.206 12 C 0.561 3.439 13 O -0.515 6.515 14 N -0.715 5.715 15 C 0.137 3.863 16 H 0.085 0.915 17 C -0.152 4.152 18 C 0.175 3.825 19 H 0.051 0.949 20 C -0.163 4.163 21 N -0.729 5.729 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.044 4.044 25 N -0.942 5.942 26 Si 1.080 2.920 27 H -0.296 1.296 28 H -0.285 1.285 29 H -0.296 1.296 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.163 0.837 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.394 0.606 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.046 0.954 49 H 0.368 0.632 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.422 -7.960 14.728 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.005 4.005 5 O -0.168 6.168 6 C 0.193 3.807 7 N -0.272 5.272 8 C 0.006 3.994 9 C -0.242 4.242 10 C -0.035 4.035 11 C -0.212 4.212 12 C 0.346 3.654 13 O -0.391 6.391 14 N -0.367 5.367 15 C 0.033 3.967 16 H 0.103 0.897 17 C -0.210 4.210 18 C 0.064 3.936 19 H 0.069 0.931 20 C -0.224 4.224 21 N -0.372 5.372 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.242 4.242 25 N -0.587 5.587 26 Si 0.910 3.090 27 H -0.223 1.223 28 H -0.211 1.211 29 H -0.223 1.223 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.180 0.820 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.228 0.772 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.202 0.798 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.078 -7.075 13.020 25.765 hybrid contribution -0.571 -0.650 1.436 1.677 sum -21.648 -7.725 14.457 27.154 Atomic orbital electron populations 1.21764 0.93907 1.02015 1.02375 1.21144 0.95551 0.97250 0.97505 1.21825 1.02677 0.94661 1.01356 1.22826 0.77877 1.00796 0.99009 1.86531 1.22500 1.70122 1.37668 1.19843 0.88103 0.86999 0.85727 1.67498 1.40262 1.16131 1.03287 1.22645 0.93035 0.90345 0.93425 1.21920 0.94850 1.06172 1.01286 1.21687 1.00690 0.90508 0.90632 1.20144 0.91842 1.09635 0.99592 1.17728 0.82116 0.79848 0.85693 1.90832 1.71271 1.41958 1.35036 1.45932 1.05932 1.60289 1.24560 1.21333 0.91759 0.97433 0.86202 0.89727 1.22040 1.01124 0.98797 0.99026 1.20322 0.88391 0.95452 0.89444 0.93101 1.22430 1.01016 1.00407 0.98506 1.42293 1.03871 1.69775 1.21299 1.19976 0.83019 1.36272 1.06819 0.91774 1.25754 1.06241 0.98699 0.93472 1.70871 1.10924 1.44948 1.31978 0.83250 0.74485 0.75611 0.75618 1.22299 1.21054 1.22319 0.92436 0.91741 0.92478 0.89971 0.93044 0.91207 0.92555 0.91714 0.91634 0.81976 0.83890 0.83744 0.77191 0.90536 0.93013 0.93237 0.94530 0.92578 0.93515 0.79794 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.10 -0.95 3.16 -90.62 -0.29 -1.24 16 3 C -0.15 -1.56 9.09 37.16 0.34 -1.23 16 4 C 0.07 0.77 4.69 37.16 0.17 0.95 16 5 O -0.26 -3.80 7.75 -39.76 -0.31 -4.11 16 6 C 0.37 5.00 7.51 -16.61 -0.12 4.88 16 7 N -0.55 -6.15 9.21 -12.98 -0.12 -6.27 16 8 C 0.16 1.30 11.17 -17.48 -0.20 1.11 16 9 C -0.22 -1.59 10.09 -39.50 -0.40 -1.99 16 10 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 11 C -0.21 -2.65 5.90 -104.69 -0.62 -3.26 16 12 C 0.56 8.73 7.74 -12.47 -0.10 8.64 16 13 O -0.52 -9.91 14.85 -16.48 -0.24 -10.15 16 14 N -0.71 -10.13 4.34 -54.85 -0.24 -10.36 16 15 C 0.14 2.38 2.21 -67.93 -0.15 2.23 16 16 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 17 C -0.15 -2.67 9.33 37.16 0.35 -2.32 16 18 C 0.17 3.35 2.52 -67.93 -0.17 3.18 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 C -0.16 -2.92 9.33 37.16 0.35 -2.57 16 21 N -0.73 -17.71 4.43 -53.42 -0.24 -17.94 16 22 C -0.33 -9.01 9.93 -15.06 -0.15 -9.16 16 23 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 25 N -0.94 -28.95 13.70 55.49 0.76 -28.19 16 26 Si 1.08 25.66 29.92 -169.99 -5.09 20.57 16 27 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.30 -6.73 7.11 56.52 0.40 -6.32 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 36 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.95 6.52 -52.49 -0.34 0.60 16 42 H 0.39 4.41 6.49 -40.82 -0.26 4.14 16 43 H 0.08 1.51 7.45 -51.93 -0.39 1.13 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.37 9.41 6.42 -40.82 -0.26 9.15 16 50 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -34.23 408.64 -8.69 -42.92 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -8.26 Total: 10.69 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.11 Total: -3.31 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.17 Total: -62.77 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.55 Total: -14.26 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.09 Total: 20.57 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.23 -8.69 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700424577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.486 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds