Wall clock time and date at job start Tue Mar 31 2020 19:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 C 1.52998 * 109.46932 * 120.00376 * 2 1 3 5 5 O 1.42901 * 109.47133 * 175.00032 * 4 2 1 6 6 C 1.35433 * 117.00067 * 179.97438 * 5 4 2 7 7 N 1.32229 * 119.79777 * 359.97438 * 6 5 4 8 8 C 1.31882 * 121.79978 * 179.97438 * 7 6 5 9 9 C 1.38361 * 121.18579 * 0.02562 * 8 7 6 10 10 C 1.38341 * 119.45465 * 359.69683 * 9 8 7 11 11 C 1.39982 * 118.34893 * 0.56114 * 10 9 8 12 12 C 1.47530 * 120.59909 * 179.70998 * 11 10 9 13 13 O 1.21588 * 120.00481 * 179.72844 * 12 11 10 14 14 N 1.34774 * 119.99629 * 359.73016 * 12 11 10 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.47256 * 35.00000 * 15 14 12 17 17 C 1.53001 * 109.47277 * 275.00029 * 15 14 12 18 18 C 1.53001 * 109.47056 * 155.00087 * 15 14 12 19 19 H 1.09000 * 109.47570 * 60.00064 * 18 15 14 20 20 C 1.52998 * 109.47014 * 299.99717 * 18 15 14 21 21 N 1.46507 * 109.47045 * 180.02562 * 18 15 14 22 22 C 1.36935 * 119.99742 * 205.00075 * 21 18 15 23 23 H 1.07999 * 120.00083 * 359.97438 * 22 21 18 24 24 C 1.38817 * 119.99986 * 179.97438 * 22 21 18 25 25 N 1.31617 * 119.99464 * 0.27719 * 24 22 21 26 26 Si 1.86800 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47035 * 60.00419 * 26 24 22 28 28 H 1.48503 * 109.46845 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47237 * 300.00175 * 26 24 22 30 30 H 1.08998 * 109.47189 * 300.00255 * 1 2 3 31 31 H 1.09007 * 109.47038 * 60.00021 * 1 2 3 32 32 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47189 * 239.99745 * 2 1 3 34 34 H 1.08998 * 109.47120 * 59.99703 * 3 2 1 35 35 H 1.09005 * 109.47068 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46970 * 300.00021 * 3 2 1 37 37 H 1.08994 * 109.47509 * 54.99499 * 4 2 1 38 38 H 1.09002 * 109.47284 * 294.99353 * 4 2 1 39 39 H 1.07999 * 119.41029 * 179.97438 * 8 7 6 40 40 H 1.07991 * 120.26988 * 179.97438 * 9 8 7 41 41 H 1.08000 * 120.82359 * 180.27818 * 10 9 8 42 42 H 0.96999 * 120.00050 * 359.97438 * 14 12 11 43 43 H 1.08996 * 109.46997 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.46920 * 299.99673 * 17 15 14 45 45 H 1.09000 * 109.46707 * 59.99597 * 17 15 14 46 46 H 1.09005 * 109.47240 * 60.00393 * 20 18 15 47 47 H 1.09005 * 109.47291 * 180.02562 * 20 18 15 48 48 H 1.09000 * 109.47695 * 299.99933 * 20 18 15 49 49 H 0.96999 * 120.00180 * 24.99002 * 21 18 15 50 50 H 0.97001 * 120.00638 * 359.71685 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4641 -0.8239 1.1920 6 6 4.0783 -1.4404 2.2297 7 7 3.3581 -1.9127 3.2330 8 6 3.9149 -2.5200 4.2628 9 6 5.2860 -2.6900 4.3387 10 6 6.0875 -2.2202 3.3137 11 6 5.4748 -1.5739 2.2337 12 6 6.2826 -1.0480 1.1168 13 8 5.7387 -0.4928 0.1818 14 7 7.6234 -1.1829 1.1330 15 6 8.4256 -0.6612 0.0237 16 1 7.9723 0.2558 -0.3526 17 6 8.4814 -1.7000 -1.0981 18 6 9.8438 -0.3646 0.5153 19 1 10.2972 -1.2816 0.8916 20 6 9.7879 0.6743 1.6370 21 7 10.6458 0.1578 -0.5939 22 6 12.0082 0.0208 -0.5776 23 1 12.4915 -0.4719 0.2530 24 6 12.7681 0.5153 -1.6289 25 7 12.1795 1.1205 -2.6385 26 14 14.6267 0.3290 -1.6062 27 1 14.9791 -1.1127 -1.5559 28 1 15.1999 0.9356 -2.8346 29 1 15.1785 1.0156 -0.4106 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 3.1301 1.4423 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6053 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1370 39 1 3.2896 -2.8907 5.0615 40 1 5.7263 -3.1892 5.1891 41 1 7.1597 -2.3449 3.3481 42 1 8.0574 -1.6255 1.8791 43 1 9.0786 -1.3120 -1.9232 44 1 8.9348 -2.6171 -0.7218 45 1 7.4710 -1.9113 -1.4482 46 1 9.1911 0.2861 2.4624 47 1 10.7984 0.8860 1.9869 48 1 9.3346 1.5914 1.2608 49 1 10.2118 0.6005 -1.3399 50 1 11.2144 1.2175 -2.6502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700424577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:57 Heat of formation + Delta-G solvation = -61.176397 kcal Electronic energy + Delta-G solvation = -29331.393429 eV Core-core repulsion = 25358.119981 eV Total energy + Delta-G solvation = -3973.273447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00039 -40.54665 -39.26529 -38.33032 -36.30028 -35.83009 -34.21910 -33.17274 -31.75290 -30.75396 -29.96980 -28.11640 -27.60958 -25.90604 -25.80317 -24.40548 -23.79993 -21.94030 -21.66900 -21.16838 -19.65892 -19.44610 -18.72707 -18.05874 -17.40328 -16.96080 -16.63201 -16.13950 -15.94095 -15.80155 -15.61888 -15.45933 -15.24744 -15.09266 -14.77202 -14.43176 -14.28676 -14.11248 -13.95860 -13.58335 -13.53924 -13.35096 -13.23714 -13.06324 -12.92998 -12.59676 -12.48298 -12.36337 -12.28432 -12.10977 -11.87694 -11.74837 -11.68026 -11.63550 -11.27725 -11.17425 -11.04929 -10.96441 -10.62988 -10.18132 -9.54740 -9.12168 -8.34660 -5.29739 -0.35434 0.23192 1.60224 1.70439 1.85924 1.86129 1.94869 2.01590 2.75220 2.79697 3.23233 3.44369 3.60476 3.68155 3.74662 3.80377 3.82753 3.86913 3.96663 4.08273 4.11097 4.22663 4.24438 4.42496 4.47790 4.50151 4.52192 4.60429 4.67918 4.72875 4.77061 4.85618 4.88098 4.90361 4.94390 4.94806 5.06689 5.09439 5.14044 5.19670 5.28441 5.33569 5.40745 5.43283 5.47515 5.64582 6.23097 6.49970 6.51800 6.74285 7.09847 7.22253 7.99423 8.12791 9.16752 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.002538 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.451250 B =11030.008978 C =12388.316216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.072 3.928 5 O -0.296 6.296 6 C 0.349 3.651 7 N -0.561 5.561 8 C 0.163 3.837 9 C -0.205 4.205 10 C -0.004 4.004 11 C -0.235 4.235 12 C 0.560 3.440 13 O -0.563 6.563 14 N -0.700 5.700 15 C 0.153 3.847 16 H 0.056 0.944 17 C -0.142 4.142 18 C 0.175 3.825 19 H 0.063 0.937 20 C -0.154 4.154 21 N -0.742 5.742 22 C -0.321 4.321 23 H 0.073 0.927 24 C -0.108 4.108 25 N -0.979 5.979 26 Si 1.127 2.873 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.278 1.278 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.202 0.798 40 H 0.186 0.814 41 H 0.172 0.828 42 H 0.412 0.588 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.044 0.956 48 H 0.028 0.972 49 H 0.357 0.643 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.729 -10.079 18.496 30.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.003 4.003 5 O -0.201 6.201 6 C 0.170 3.830 7 N -0.285 5.285 8 C 0.007 3.993 9 C -0.224 4.224 10 C -0.030 4.030 11 C -0.241 4.241 12 C 0.347 3.653 13 O -0.442 6.442 14 N -0.354 5.354 15 C 0.047 3.953 16 H 0.074 0.926 17 C -0.200 4.200 18 C 0.066 3.934 19 H 0.081 0.919 20 C -0.213 4.213 21 N -0.385 5.385 22 C -0.452 4.452 23 H 0.091 0.909 24 C -0.299 4.299 25 N -0.627 5.627 26 Si 0.952 3.048 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.204 1.204 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.219 0.781 40 H 0.204 0.796 41 H 0.189 0.811 42 H 0.250 0.750 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.189 0.811 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.404 -9.240 16.879 28.782 hybrid contribution -0.583 -0.076 0.437 0.733 sum -21.987 -9.316 17.316 29.496 Atomic orbital electron populations 1.21721 0.91436 1.02909 1.03247 1.21178 0.97490 0.96278 0.96496 1.21770 1.00271 0.95668 1.02359 1.22912 0.76889 1.01107 0.99396 1.86503 1.23880 1.70775 1.38914 1.20087 0.88585 0.88016 0.86339 1.67562 1.40487 1.16803 1.03684 1.23469 0.94393 0.88492 0.92965 1.22396 0.94239 1.04360 1.01428 1.22057 1.02242 0.89121 0.89571 1.20018 0.91506 1.12349 1.00223 1.18225 0.82222 0.78883 0.85932 1.90811 1.72123 1.44125 1.37147 1.45637 1.05494 1.60093 1.24163 1.20874 0.90940 0.96380 0.87073 0.92567 1.21918 1.00515 0.99254 0.98340 1.20491 0.88576 0.95979 0.88383 0.91876 1.22287 1.00870 0.99250 0.98932 1.42501 1.03582 1.69993 1.22394 1.20332 0.84348 1.34253 1.06256 0.90894 1.27162 1.10212 0.99016 0.93482 1.70984 1.10181 1.47811 1.33753 0.82633 0.69923 0.76653 0.75561 1.20158 1.22485 1.20385 0.91450 0.90943 0.91584 0.91691 0.91966 0.94814 0.91562 0.91292 0.91344 0.78097 0.79649 0.81094 0.75030 0.93239 0.91498 0.93503 0.90578 0.93714 0.95238 0.81103 0.94704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.10 -1.98 3.16 -10.80 -0.03 -2.02 16 3 C -0.14 -3.22 9.09 71.98 0.65 -2.57 16 4 C 0.07 1.64 4.69 71.98 0.34 1.97 16 5 O -0.30 -8.99 7.75 -66.48 -0.52 -9.51 16 6 C 0.35 9.34 7.51 85.13 0.64 9.98 16 7 N -0.56 -11.69 9.21 -307.99 -2.84 -14.52 16 8 C 0.16 1.99 11.17 84.71 0.95 2.94 16 9 C -0.20 -1.95 10.09 22.32 0.23 -1.72 16 10 C 0.00 -0.06 9.64 22.72 0.22 0.16 16 11 C -0.23 -5.84 5.90 -19.91 -0.12 -5.96 16 12 C 0.56 17.67 7.74 86.69 0.67 18.34 16 13 O -0.56 -23.03 14.85 16.82 0.25 -22.78 16 14 N -0.70 -19.23 4.34 -445.72 -1.93 -21.16 16 15 C 0.15 5.39 2.21 44.99 0.10 5.49 16 16 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 17 C -0.14 -5.12 9.33 71.98 0.67 -4.45 16 18 C 0.17 6.60 2.52 44.99 0.11 6.72 16 19 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 20 C -0.15 -5.30 9.33 71.98 0.67 -4.63 16 21 N -0.74 -36.68 4.43 -322.93 -1.43 -38.11 16 22 C -0.32 -17.48 9.93 84.04 0.83 -16.64 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.11 -6.22 5.50 84.86 0.47 -5.75 16 25 N -0.98 -61.96 13.70 21.65 0.30 -61.66 16 26 Si 1.13 51.57 29.92 68.60 2.05 53.62 16 27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.03 0.99 7.82 -2.38 -0.02 0.97 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.44 8.10 -2.39 -0.02 1.43 16 38 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.19 0.25 8.06 -2.92 -0.02 0.22 16 41 H 0.17 1.44 6.52 -2.91 -0.02 1.43 16 42 H 0.41 8.09 6.49 -92.71 -0.60 7.49 16 43 H 0.05 2.05 7.45 -2.39 -0.02 2.03 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 2.00 7.45 -2.38 -0.02 1.98 16 47 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 48 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.36 19.13 6.42 -92.71 -0.59 18.54 16 50 H 0.24 15.44 6.77 -92.71 -0.63 14.81 16 Total: -1.00 -79.38 408.64 2.83 -76.55 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.12 Total: 36.93 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 7.06 Total: 0.64 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -5.90 Total: -135.45 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.27 Total: -32.29 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -79.38 2.83 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700424577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.375 kcal (2) G-P(sol) polarization free energy of solvation -79.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds