Wall clock time and date at job start Tue Mar 31 2020 19:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.53005 * 109.47020 * 119.99509 * 2 1 3 5 5 O 1.42905 * 109.46519 * 65.00245 * 4 2 1 6 6 C 1.35427 * 116.99381 * 179.97438 * 5 4 2 7 7 N 1.32239 * 119.80541 * 359.97438 * 6 5 4 8 8 C 1.31876 * 121.80151 * 179.97438 * 7 6 5 9 9 C 1.38361 * 121.18803 * 0.02562 * 8 7 6 10 10 C 1.38334 * 119.45638 * 359.69883 * 9 8 7 11 11 C 1.39991 * 118.34872 * 0.56255 * 10 9 8 12 12 C 1.47519 * 120.59732 * 179.71446 * 11 10 9 13 13 O 1.21590 * 120.00346 * 179.72382 * 12 11 10 14 14 N 1.34780 * 120.00021 * 359.72200 * 12 11 10 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 18 18 C 1.52999 * 109.46944 * 205.00356 * 15 14 12 19 19 H 1.08994 * 109.47465 * 64.99757 * 18 15 14 20 20 C 1.53003 * 109.47015 * 304.99481 * 18 15 14 21 21 N 1.46500 * 109.47177 * 184.99965 * 18 15 14 22 22 C 1.36941 * 119.99862 * 204.99404 * 21 18 15 23 23 H 1.07997 * 119.99973 * 0.02562 * 22 21 18 24 24 C 1.38818 * 119.99628 * 179.97438 * 22 21 18 25 25 N 1.31614 * 120.00265 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99662 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47190 * 90.00331 * 26 24 22 28 28 H 1.48505 * 109.47037 * 210.00552 * 26 24 22 29 29 H 1.48499 * 109.47236 * 330.00359 * 26 24 22 30 30 H 1.09002 * 109.47173 * 60.00329 * 1 2 3 31 31 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47664 * 300.00238 * 1 2 3 33 33 H 1.09001 * 109.47664 * 239.99762 * 2 1 3 34 34 H 1.09004 * 109.47144 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47196 * 299.99258 * 3 2 1 36 36 H 1.08997 * 109.47369 * 60.00090 * 3 2 1 37 37 H 1.08994 * 109.47049 * 305.00632 * 4 2 1 38 38 H 1.09000 * 109.47133 * 184.99572 * 4 2 1 39 39 H 1.08000 * 119.40510 * 179.97438 * 8 7 6 40 40 H 1.07997 * 120.26925 * 179.97438 * 9 8 7 41 41 H 1.07998 * 120.82812 * 180.27742 * 10 9 8 42 42 H 0.96994 * 120.00115 * 0.02562 * 14 12 11 43 43 H 1.09002 * 109.47153 * 59.99757 * 17 15 14 44 44 H 1.09001 * 109.46832 * 299.99948 * 17 15 14 45 45 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 46 46 H 1.08994 * 109.47229 * 300.00420 * 20 18 15 47 47 H 1.09000 * 109.46883 * 59.99966 * 20 18 15 48 48 H 1.09001 * 109.47405 * 179.97438 * 20 18 15 49 49 H 0.97004 * 120.00210 * 24.99770 * 21 18 15 50 50 H 0.97001 * 120.00137 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 1.6619 -2.0981 1.1921 6 6 2.0391 -2.8828 2.2294 7 7 2.7262 -2.3617 3.2319 8 6 3.1131 -3.0891 4.2616 9 6 2.8155 -4.4382 4.3380 10 6 2.0938 -5.0343 3.3194 11 6 1.6987 -4.2437 2.2338 12 6 0.9328 -4.8298 1.1175 13 8 0.5908 -4.1320 0.1823 14 7 0.6122 -6.1388 1.1342 15 6 -0.1479 -6.7209 0.0253 16 1 -0.8611 -5.9874 -0.3510 17 6 0.8122 -7.1209 -1.0968 18 6 -0.9010 -7.9584 0.5174 19 1 -1.6475 -7.6606 1.2537 20 6 0.0868 -8.9350 1.1589 21 7 -1.5647 -8.6087 -0.6152 22 6 -2.6722 -9.3864 -0.4054 23 1 -3.0566 -9.5200 0.5950 24 6 -3.3013 -10.0022 -1.4787 25 7 -2.8332 -9.8390 -2.6979 26 14 -4.8124 -11.0624 -1.1926 27 1 -6.0321 -10.2200 -1.2811 28 1 -4.8714 -12.1289 -2.2243 29 1 -4.7350 -11.6812 0.1551 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6052 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2952 39 1 3.6731 -2.6236 5.0591 40 1 3.1401 -5.0200 5.1880 41 1 1.8454 -6.0846 3.3585 42 1 0.8847 -6.6954 1.8803 43 1 1.5253 -7.8544 -0.7205 44 1 1.3487 -6.2392 -1.4474 45 1 0.2467 -7.5544 -1.9216 46 1 0.8332 -9.2328 0.4226 47 1 0.5806 -8.4512 2.0016 48 1 -0.4498 -9.8165 1.5100 49 1 -1.2196 -8.4885 -1.5138 50 1 -3.2726 -10.2696 -3.4478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700424579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:01 Heat of formation + Delta-G solvation = -34.412039 kcal Electronic energy + Delta-G solvation = -29282.923729 eV Core-core repulsion = 25310.810871 eV Total energy + Delta-G solvation = -3972.112857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08441 -39.30737 -38.39579 -36.80456 -35.44647 -33.95371 -33.01354 -31.60613 -30.83876 -29.18759 -28.20549 -27.32054 -26.79247 -25.02784 -24.33077 -23.38011 -22.81398 -20.81291 -20.27596 -19.33081 -18.65335 -17.78833 -17.27245 -17.07021 -16.44625 -15.43922 -15.34524 -15.14002 -14.80445 -14.55763 -14.39547 -14.29881 -14.12035 -13.61233 -13.51388 -13.25575 -13.17248 -12.81966 -12.75567 -12.55471 -12.41080 -12.36268 -11.95005 -11.61599 -11.58837 -11.28620 -11.24257 -10.94364 -10.91529 -10.82146 -10.79931 -10.47415 -10.25661 -10.22007 -10.18158 -9.96653 -9.73366 -9.50699 -8.94149 -8.84379 -8.63964 -7.00313 -5.78258 -3.07733 0.47661 0.98019 2.79552 2.93452 3.27225 3.43223 3.48351 3.49755 3.69990 3.99808 4.43087 4.56293 4.57703 4.59997 4.65042 4.72745 4.84186 5.00016 5.17931 5.23742 5.30067 5.36543 5.39695 5.48342 5.49581 5.56656 5.63346 5.66537 5.66756 5.74029 5.75465 5.85386 5.87609 6.00472 6.08328 6.13553 6.17334 6.26289 6.30847 6.40529 6.49786 6.65140 6.72301 6.94926 7.07834 7.09161 7.48470 7.68512 7.73824 8.39746 8.44860 9.51514 10.07080 10.41939 11.44341 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.002575 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.300699 B =10869.169648 C =12264.670503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.070 3.930 5 O -0.264 6.264 6 C 0.373 3.627 7 N -0.548 5.548 8 C 0.162 3.838 9 C -0.222 4.222 10 C -0.010 4.010 11 C -0.205 4.205 12 C 0.559 3.441 13 O -0.515 6.515 14 N -0.717 5.717 15 C 0.138 3.862 16 H 0.089 0.911 17 C -0.159 4.159 18 C 0.168 3.832 19 H 0.051 0.949 20 C -0.168 4.168 21 N -0.719 5.719 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.163 0.837 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.393 0.607 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.030 0.970 48 H 0.057 0.943 49 H 0.387 0.613 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.099 17.175 14.123 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.005 4.005 5 O -0.168 6.168 6 C 0.193 3.807 7 N -0.272 5.272 8 C 0.005 3.995 9 C -0.242 4.242 10 C -0.036 4.036 11 C -0.212 4.212 12 C 0.344 3.656 13 O -0.391 6.391 14 N -0.371 5.371 15 C 0.034 3.966 16 H 0.107 0.893 17 C -0.217 4.217 18 C 0.057 3.943 19 H 0.069 0.931 20 C -0.228 4.228 21 N -0.363 5.363 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.180 0.820 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.230 0.770 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.223 0.777 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.711 18.423 13.147 26.994 hybrid contribution -0.588 -1.692 0.501 1.859 sum 14.123 16.732 13.648 25.801 Atomic orbital electron populations 1.21825 0.94162 1.03211 1.01336 1.21146 0.97236 0.95553 0.97515 1.21764 1.01021 0.94917 1.02358 1.22826 0.99873 0.78810 0.98998 1.86534 1.71178 1.21332 1.37725 1.19847 0.87421 0.87696 0.85728 1.67497 1.16374 1.40024 1.03304 1.22635 0.92705 0.90749 0.93416 1.21915 1.04259 0.96652 1.01416 1.21685 0.91428 0.99812 0.90633 1.20168 1.08951 0.92562 0.99481 1.17754 0.79847 0.82287 0.85695 1.90834 1.52970 1.60249 1.34998 1.46132 1.57189 1.09038 1.24741 1.21325 0.93096 0.96103 0.86091 0.89287 1.22140 0.99654 1.00896 0.99024 1.20359 0.92761 0.89651 0.91517 0.93067 1.22540 1.00261 1.01032 0.99006 1.42453 1.32246 1.57232 1.04325 1.19219 1.03129 1.21491 0.93314 0.91144 1.24745 0.99590 1.01174 0.95311 1.69655 1.42133 1.48141 0.98005 0.86188 0.83072 0.79915 0.76972 1.21699 1.21786 1.20796 0.92568 0.91147 0.93060 0.89955 0.92496 0.91756 0.92449 0.91647 0.91731 0.82008 0.83915 0.83785 0.77016 0.92616 0.93046 0.90501 0.92740 0.95082 0.92348 0.77747 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.09 37.16 0.34 -1.25 16 2 C -0.10 -0.96 3.16 -90.62 -0.29 -1.25 16 3 C -0.14 -1.06 9.19 37.16 0.34 -0.71 16 4 C 0.07 0.78 4.69 37.16 0.17 0.96 16 5 O -0.26 -3.83 7.75 -39.74 -0.31 -4.13 16 6 C 0.37 5.04 7.51 -16.61 -0.12 4.92 16 7 N -0.55 -6.21 9.21 -12.98 -0.12 -6.32 16 8 C 0.16 1.31 11.17 -17.49 -0.20 1.12 16 9 C -0.22 -1.61 10.09 -39.50 -0.40 -2.01 16 10 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 11 C -0.21 -2.67 5.90 -104.69 -0.62 -3.29 16 12 C 0.56 8.83 7.74 -12.48 -0.10 8.73 16 13 O -0.51 -10.02 14.85 -16.48 -0.24 -10.26 16 14 N -0.72 -10.31 4.94 -54.85 -0.27 -10.58 16 15 C 0.14 2.42 2.62 -67.93 -0.18 2.24 16 16 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 17 C -0.16 -2.74 9.00 37.16 0.33 -2.41 16 18 C 0.17 3.22 2.93 -67.93 -0.20 3.02 16 19 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 20 C -0.17 -2.76 9.01 37.16 0.33 -2.43 16 21 N -0.72 -17.57 5.03 -53.42 -0.27 -17.83 16 22 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 26 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.97 6.51 -52.49 -0.34 0.63 16 42 H 0.39 4.53 4.68 -40.82 -0.19 4.34 16 43 H 0.05 0.88 6.57 -51.93 -0.34 0.54 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 46 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 47 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.39 10.01 5.77 -40.82 -0.24 9.77 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -33.41 402.63 -8.58 -41.98 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.94 Total: 11.01 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.19 Total: 0.04 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.07 Total: -61.91 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.55 Total: -14.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.41 -8.58 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700424579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.569 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds