Wall clock time and date at job start Tue Mar 31 2020 19:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.53005 * 109.47020 * 119.99509 * 2 1 3 5 5 O 1.42905 * 109.46519 * 65.00245 * 4 2 1 6 6 C 1.35427 * 116.99381 * 179.97438 * 5 4 2 7 7 N 1.32239 * 119.80541 * 359.97438 * 6 5 4 8 8 C 1.31876 * 121.80151 * 179.97438 * 7 6 5 9 9 C 1.38361 * 121.18803 * 0.02562 * 8 7 6 10 10 C 1.38334 * 119.45638 * 359.69883 * 9 8 7 11 11 C 1.39991 * 118.34872 * 0.56255 * 10 9 8 12 12 C 1.47519 * 120.59732 * 179.71446 * 11 10 9 13 13 O 1.21590 * 120.00346 * 179.72382 * 12 11 10 14 14 N 1.34780 * 120.00021 * 359.72200 * 12 11 10 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 18 18 C 1.52999 * 109.46944 * 205.00356 * 15 14 12 19 19 H 1.08994 * 109.47465 * 64.99757 * 18 15 14 20 20 C 1.53003 * 109.47015 * 304.99481 * 18 15 14 21 21 N 1.46500 * 109.47177 * 184.99965 * 18 15 14 22 22 C 1.36941 * 119.99862 * 204.99404 * 21 18 15 23 23 H 1.07997 * 119.99973 * 0.02562 * 22 21 18 24 24 C 1.38818 * 119.99628 * 179.97438 * 22 21 18 25 25 N 1.31614 * 120.00265 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99662 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47190 * 90.00331 * 26 24 22 28 28 H 1.48505 * 109.47037 * 210.00552 * 26 24 22 29 29 H 1.48499 * 109.47236 * 330.00359 * 26 24 22 30 30 H 1.09002 * 109.47173 * 60.00329 * 1 2 3 31 31 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47664 * 300.00238 * 1 2 3 33 33 H 1.09001 * 109.47664 * 239.99762 * 2 1 3 34 34 H 1.09004 * 109.47144 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47196 * 299.99258 * 3 2 1 36 36 H 1.08997 * 109.47369 * 60.00090 * 3 2 1 37 37 H 1.08994 * 109.47049 * 305.00632 * 4 2 1 38 38 H 1.09000 * 109.47133 * 184.99572 * 4 2 1 39 39 H 1.08000 * 119.40510 * 179.97438 * 8 7 6 40 40 H 1.07997 * 120.26925 * 179.97438 * 9 8 7 41 41 H 1.07998 * 120.82812 * 180.27742 * 10 9 8 42 42 H 0.96994 * 120.00115 * 0.02562 * 14 12 11 43 43 H 1.09002 * 109.47153 * 59.99757 * 17 15 14 44 44 H 1.09001 * 109.46832 * 299.99948 * 17 15 14 45 45 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 46 46 H 1.08994 * 109.47229 * 300.00420 * 20 18 15 47 47 H 1.09000 * 109.46883 * 59.99966 * 20 18 15 48 48 H 1.09001 * 109.47405 * 179.97438 * 20 18 15 49 49 H 0.97004 * 120.00210 * 24.99770 * 21 18 15 50 50 H 0.97001 * 120.00137 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 1.6619 -2.0981 1.1921 6 6 2.0391 -2.8828 2.2294 7 7 2.7262 -2.3617 3.2319 8 6 3.1131 -3.0891 4.2616 9 6 2.8155 -4.4382 4.3380 10 6 2.0938 -5.0343 3.3194 11 6 1.6987 -4.2437 2.2338 12 6 0.9328 -4.8298 1.1175 13 8 0.5908 -4.1320 0.1823 14 7 0.6122 -6.1388 1.1342 15 6 -0.1479 -6.7209 0.0253 16 1 -0.8611 -5.9874 -0.3510 17 6 0.8122 -7.1209 -1.0968 18 6 -0.9010 -7.9584 0.5174 19 1 -1.6475 -7.6606 1.2537 20 6 0.0868 -8.9350 1.1589 21 7 -1.5647 -8.6087 -0.6152 22 6 -2.6722 -9.3864 -0.4054 23 1 -3.0566 -9.5200 0.5950 24 6 -3.3013 -10.0022 -1.4787 25 7 -2.8332 -9.8390 -2.6979 26 14 -4.8124 -11.0624 -1.1926 27 1 -6.0321 -10.2200 -1.2811 28 1 -4.8714 -12.1289 -2.2243 29 1 -4.7350 -11.6812 0.1551 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6052 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2952 39 1 3.6731 -2.6236 5.0591 40 1 3.1401 -5.0200 5.1880 41 1 1.8454 -6.0846 3.3585 42 1 0.8847 -6.6954 1.8803 43 1 1.5253 -7.8544 -0.7205 44 1 1.3487 -6.2392 -1.4474 45 1 0.2467 -7.5544 -1.9216 46 1 0.8332 -9.2328 0.4226 47 1 0.5806 -8.4512 2.0016 48 1 -0.4498 -9.8165 1.5100 49 1 -1.2196 -8.4885 -1.5138 50 1 -3.2726 -10.2696 -3.4478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700424579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:00 Heat of formation + Delta-G solvation = -56.966333 kcal Electronic energy + Delta-G solvation = -29283.901756 eV Core-core repulsion = 25310.810871 eV Total energy + Delta-G solvation = -3973.090885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97408 -40.53448 -39.24171 -38.32618 -36.26607 -35.59133 -34.15650 -33.13535 -31.71781 -30.71407 -29.79868 -28.09631 -27.59276 -26.20438 -25.95330 -24.68179 -23.82970 -21.97254 -21.15658 -20.73852 -19.66373 -19.39345 -18.61879 -17.99204 -17.35445 -16.72774 -16.60149 -16.16660 -16.12928 -15.76710 -15.72167 -15.41158 -15.23838 -15.12451 -14.61609 -14.42765 -14.13085 -13.94959 -13.87917 -13.57221 -13.47550 -13.30982 -13.08956 -13.04454 -13.00258 -12.79331 -12.63629 -12.34316 -12.12965 -12.08933 -12.00876 -11.72653 -11.66196 -11.61575 -11.59371 -11.15664 -11.02474 -10.95003 -10.60085 -10.11842 -9.51845 -9.02739 -7.92975 -5.21860 -0.32702 0.25543 1.48123 1.50105 1.57993 1.89598 1.98293 2.07134 2.58596 2.82352 3.26081 3.40888 3.69182 3.70824 3.81412 3.86538 3.93252 3.96340 4.00408 4.08791 4.10978 4.25834 4.32785 4.44906 4.51827 4.54286 4.60634 4.62498 4.69996 4.74769 4.87725 4.90017 4.92362 4.96722 4.96974 5.03584 5.10316 5.16004 5.20130 5.26029 5.30494 5.35795 5.46181 5.50014 5.56620 5.64865 6.25771 6.29014 6.54667 6.76877 7.26607 7.35499 8.09914 8.32947 9.30714 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.002575 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.300699 B =10869.169648 C =12264.670503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.136 4.136 4 C 0.072 3.928 5 O -0.295 6.295 6 C 0.349 3.651 7 N -0.561 5.561 8 C 0.163 3.837 9 C -0.204 4.204 10 C -0.005 4.005 11 C -0.235 4.235 12 C 0.557 3.443 13 O -0.563 6.563 14 N -0.702 5.702 15 C 0.152 3.848 16 H 0.053 0.947 17 C -0.148 4.148 18 C 0.166 3.834 19 H 0.047 0.953 20 C -0.158 4.158 21 N -0.734 5.734 22 C -0.237 4.237 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.972 3.028 27 H -0.291 1.291 28 H -0.297 1.297 29 H -0.266 1.266 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.202 0.798 40 H 0.187 0.813 41 H 0.171 0.829 42 H 0.411 0.589 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.045 0.955 49 H 0.376 0.624 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.853 17.112 17.945 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.193 4.193 4 C -0.003 4.003 5 O -0.201 6.201 6 C 0.170 3.830 7 N -0.285 5.285 8 C 0.006 3.994 9 C -0.224 4.224 10 C -0.030 4.030 11 C -0.241 4.241 12 C 0.345 3.655 13 O -0.442 6.442 14 N -0.357 5.357 15 C 0.047 3.953 16 H 0.072 0.928 17 C -0.207 4.207 18 C 0.057 3.943 19 H 0.065 0.935 20 C -0.218 4.218 21 N -0.377 5.377 22 C -0.368 4.368 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.801 3.199 27 H -0.219 1.219 28 H -0.224 1.224 29 H -0.191 1.191 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.219 0.781 40 H 0.204 0.796 41 H 0.189 0.811 42 H 0.250 0.750 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.064 0.936 49 H 0.210 0.790 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.498 18.356 17.059 30.002 hybrid contribution -1.033 -1.586 -0.517 1.962 sum 15.465 16.770 16.543 28.179 Atomic orbital electron populations 1.21771 0.94939 1.01040 1.02346 1.21179 0.96574 0.97173 0.96516 1.21719 1.01568 0.92783 1.03231 1.22914 1.00113 0.77902 0.99382 1.86507 1.71950 1.22619 1.38982 1.20087 0.88617 0.87984 0.86345 1.67562 1.16533 1.40744 1.03697 1.23468 0.91473 0.91473 0.92943 1.22396 1.02012 0.96443 1.01539 1.22054 0.90708 1.00727 0.89556 1.20038 1.10915 0.93037 1.00126 1.18268 0.79268 0.82039 0.85959 1.90811 1.54963 1.61325 1.37149 1.45823 1.56544 1.09007 1.24303 1.20870 0.92755 0.94586 0.87123 0.92826 1.22019 0.99459 1.00967 0.98231 1.20530 0.93303 0.90495 0.89957 0.93482 1.22361 0.99285 0.99823 1.00293 1.42664 1.32220 1.57438 1.05350 1.19619 1.03299 1.20441 0.93473 0.90347 1.25552 1.02792 1.03348 0.95232 1.69819 1.43738 1.49830 0.98730 0.85157 0.79456 0.78003 0.77241 1.21855 1.22396 1.19103 0.91571 0.94813 0.91972 0.91667 0.91573 0.90958 0.91462 0.91357 0.91265 0.78089 0.79605 0.81139 0.74980 0.90644 0.93458 0.92890 0.92915 0.90332 0.93581 0.79013 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.09 71.98 0.65 -2.62 16 2 C -0.10 -2.01 3.16 -10.79 -0.03 -2.04 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C 0.07 1.65 4.69 71.98 0.34 1.99 16 5 O -0.30 -9.09 7.75 -66.41 -0.51 -9.60 16 6 C 0.35 9.45 7.51 85.13 0.64 10.09 16 7 N -0.56 -11.79 9.21 -307.99 -2.84 -14.63 16 8 C 0.16 2.01 11.17 84.72 0.95 2.95 16 9 C -0.20 -1.97 10.09 22.32 0.23 -1.74 16 10 C 0.00 -0.07 9.64 22.72 0.22 0.15 16 11 C -0.23 -5.94 5.90 -19.91 -0.12 -6.06 16 12 C 0.56 17.94 7.74 86.69 0.67 18.61 16 13 O -0.56 -23.45 14.85 16.82 0.25 -23.20 16 14 N -0.70 -19.66 4.94 -445.72 -2.20 -21.87 16 15 C 0.15 5.44 2.62 44.99 0.12 5.56 16 16 H 0.05 2.31 7.58 -2.39 -0.02 2.29 16 17 C -0.15 -5.25 9.00 71.98 0.65 -4.61 16 18 C 0.17 6.31 2.93 44.99 0.13 6.44 16 19 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 20 C -0.16 -4.82 9.01 71.98 0.65 -4.17 16 21 N -0.73 -36.53 5.03 -322.94 -1.63 -38.16 16 22 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 25 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 26 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.00 7.82 -2.39 -0.02 0.98 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.19 0.25 8.06 -2.91 -0.02 0.22 16 41 H 0.17 1.48 6.51 -2.91 -0.02 1.46 16 42 H 0.41 8.29 4.68 -92.71 -0.43 7.85 16 43 H 0.07 2.33 6.57 -2.39 -0.02 2.32 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 2.13 6.29 -2.38 -0.02 2.12 16 46 H 0.05 1.64 6.56 -2.39 -0.02 1.63 16 47 H 0.08 1.63 6.29 -2.39 -0.02 1.61 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.38 20.21 5.77 -92.71 -0.54 19.68 16 50 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.03 402.63 2.41 -75.61 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.02 Total: 35.91 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.05 Total: 7.24 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -6.38 Total: -134.17 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.26 Total: -32.80 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.03 2.41 -75.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700424579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.649 kcal (2) G-P(sol) polarization free energy of solvation -78.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds