Wall clock time and date at job start Tue Mar 31 2020 18:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 5 5 C 1.34774 * 119.99618 * 275.00242 * 4 2 1 6 6 O 1.21281 * 120.00442 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99927 * 179.97438 * 5 4 2 8 8 C 1.53001 * 119.29838 * 250.94941 * 7 5 4 9 9 C 1.53871 * 121.33426 * 179.11437 * 7 5 4 10 10 H 1.09005 * 121.32992 * 359.43520 * 9 7 5 11 11 C 1.54262 * 106.59988 * 221.93462 * 9 7 5 12 12 C 1.54887 * 104.19835 * 23.60867 * 11 9 7 13 13 C 1.54265 * 117.41442 * 45.28271 * 7 5 4 14 14 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 15 15 C 1.53935 * 113.73341 * 156.73070 * 14 2 1 16 16 N 1.47961 * 86.17773 * 221.92132 * 15 14 2 17 17 C 1.46898 * 111.00396 * 137.58147 * 16 15 14 18 18 C 1.50711 * 109.46820 * 90.63731 * 17 16 15 19 19 O 1.21290 * 119.99904 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99609 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99934 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00135 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00134 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00246 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46921 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46863 * 119.99855 * 25 23 21 28 28 H 1.48494 * 109.46612 * 239.99740 * 25 23 21 29 29 C 1.47964 * 90.76570 * 24.68744 * 16 15 14 30 30 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 33 33 H 0.96990 * 120.00057 * 94.99539 * 4 2 1 34 34 H 1.09008 * 117.45751 * 356.28747 * 8 7 5 35 35 H 1.08997 * 117.46585 * 141.09187 * 8 7 5 36 36 H 1.09002 * 110.48638 * 264.92775 * 11 9 7 37 37 H 1.09003 * 110.60078 * 142.34332 * 11 9 7 38 38 H 1.09002 * 110.75834 * 203.74833 * 12 11 9 39 39 H 1.09000 * 110.91549 * 80.44040 * 12 11 9 40 40 H 1.08997 * 110.49383 * 235.04911 * 13 7 5 41 41 H 1.09000 * 110.48853 * 357.69898 * 13 7 5 42 42 H 1.08999 * 112.93453 * 288.43064 * 14 2 1 43 43 H 1.08997 * 113.75905 * 336.23012 * 15 14 2 44 44 H 1.08998 * 113.76075 * 107.60545 * 15 14 2 45 45 H 1.08995 * 109.47189 * 210.63810 * 17 16 15 46 46 H 1.08995 * 109.46825 * 330.64243 * 17 16 15 47 47 H 0.97001 * 120.00525 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00548 * 180.02562 * 24 23 21 49 49 H 1.08999 * 113.75804 * 220.99323 * 29 16 15 50 50 H 1.09001 * 113.75673 * 89.62820 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7287 3.5877 8 6 1.6778 -1.0165 4.7345 9 6 2.8267 0.0137 4.9237 10 1 2.6033 1.0766 5.0155 11 6 4.1582 -0.4784 5.5276 12 6 4.9666 -0.9813 4.3058 13 6 3.8785 -1.6462 3.4263 14 6 2.0400 -0.7213 -1.2493 15 6 3.4670 -0.3155 -1.6598 16 7 2.9605 -0.3147 -3.0500 17 6 3.4682 0.8453 -3.7947 18 6 4.7627 0.4787 -4.4739 19 8 5.2172 -0.6389 -4.3501 20 7 5.4151 1.3929 -5.2188 21 6 6.5925 1.0594 -5.8371 22 1 6.9968 0.0640 -5.7276 23 6 7.2655 2.0021 -6.6047 24 7 6.7733 3.2131 -6.7384 25 14 8.8693 1.5474 -7.4477 26 1 9.2055 0.1336 -7.1423 27 1 8.7218 1.7156 -8.9158 28 1 9.9556 2.4317 -6.9547 29 6 1.5822 -0.0739 -2.5687 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 0.6607 -0.6359 4.6393 35 1 1.7750 -1.9733 5.2474 36 1 3.9807 -1.2935 6.2292 37 1 4.6818 0.3408 6.0204 38 1 5.7153 -1.7118 4.6121 39 1 5.4337 -0.1491 3.7791 40 1 3.6560 -2.6498 3.7887 41 1 4.1970 -1.6776 2.3844 42 1 1.8824 -1.7992 -1.2115 43 1 3.7640 0.6697 -1.3002 44 1 4.2152 -1.0839 -1.4654 45 1 2.7362 1.1441 -4.5449 46 1 3.6408 1.6721 -3.1058 47 1 5.0518 2.2869 -5.3175 48 1 7.2429 3.8711 -7.2746 49 1 0.8245 -0.6494 -3.1006 50 1 1.3280 0.9819 -2.4749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700542027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:51 Heat of formation + Delta-G solvation = -16.778414 kcal Electronic energy + Delta-G solvation = -28838.813602 eV Core-core repulsion = 24867.465396 eV Total energy + Delta-G solvation = -3971.348206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90547 -40.09398 -38.40708 -37.67975 -35.38864 -33.85338 -31.98696 -31.68681 -31.16367 -29.51247 -28.56652 -26.28884 -25.55014 -24.47333 -23.65403 -22.60666 -21.41667 -20.64275 -20.18775 -19.26416 -18.90635 -17.86026 -17.39315 -16.62359 -16.06915 -15.68756 -15.50876 -15.18747 -14.97753 -14.65798 -14.42016 -14.22244 -13.81553 -13.70874 -13.59328 -13.42824 -13.33747 -13.00512 -12.68885 -12.54915 -12.32175 -12.13250 -11.88510 -11.61247 -11.50766 -11.47527 -11.36342 -11.29604 -11.07530 -10.95019 -10.72584 -10.64807 -10.63294 -10.32531 -10.19348 -10.08952 -9.82321 -9.48246 -9.28734 -8.68502 -8.14002 -7.92927 -6.38766 -3.79418 2.31686 2.87122 3.18001 3.23434 3.28073 3.35488 3.91143 3.96519 4.02282 4.20969 4.22301 4.30823 4.37726 4.55402 4.57879 4.82735 4.95966 4.98474 5.03632 5.05668 5.16644 5.17219 5.22509 5.24556 5.27675 5.32247 5.39911 5.45264 5.47635 5.52401 5.54083 5.66458 5.67869 5.71060 5.71980 5.77118 5.79200 5.82222 5.92701 6.00317 6.02770 6.16474 6.30911 6.36316 6.60941 7.19848 7.32117 7.57988 8.05664 8.09536 8.65575 9.21672 9.58323 10.10796 10.79290 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.002213 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.292337 B =12650.949432 C =13825.651621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.717 5.717 5 C 0.557 3.443 6 O -0.541 6.541 7 C -0.178 4.178 8 C -0.123 4.123 9 C -0.128 4.128 10 H 0.120 0.880 11 C -0.097 4.097 12 C -0.124 4.124 13 C -0.088 4.088 14 C -0.125 4.125 15 C 0.018 3.982 16 N -0.449 5.449 17 C 0.009 3.991 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.010 3.990 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 -7.437 22.761 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.368 5.368 5 C 0.344 3.656 6 O -0.418 6.418 7 C -0.181 4.181 8 C -0.160 4.160 9 C -0.147 4.147 10 H 0.138 0.862 11 C -0.135 4.135 12 C -0.161 4.161 13 C -0.126 4.126 14 C -0.144 4.144 15 C -0.111 4.111 16 N -0.171 5.171 17 C -0.123 4.123 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.120 4.120 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.116 -7.717 22.281 26.511 hybrid contribution 0.544 0.880 -0.331 1.086 sum -11.573 -6.837 21.951 25.739 Atomic orbital electron populations 1.22134 0.94988 1.02219 1.02546 1.21069 0.94178 0.97220 0.83047 0.89394 1.45985 1.67338 1.14096 1.09383 1.19347 0.76651 0.86327 0.83324 1.90700 1.50349 1.15821 1.84911 1.22440 1.01535 1.04452 0.89664 1.23468 0.94817 1.00296 0.97467 1.23754 0.96240 0.98562 0.96122 0.86224 1.22001 0.93314 1.00778 0.97368 1.22688 0.97387 1.00401 0.95672 1.21966 0.91941 0.97530 1.01131 1.23317 0.97007 1.01149 0.92949 1.23982 0.96206 1.01514 0.89404 1.68376 1.01873 1.36030 1.10793 1.22487 0.98056 0.92736 0.98991 1.19694 0.86543 0.86361 0.84174 1.90514 1.68791 1.21460 1.65155 1.41890 1.21778 1.12965 1.43913 1.19739 0.98039 0.99379 1.25468 0.87943 1.25256 0.99868 0.95007 0.97938 1.69618 1.40168 1.03815 1.40887 0.85809 0.81113 0.78786 0.78699 1.19242 1.20758 1.20793 1.23962 0.94240 0.99927 0.93845 0.91298 0.92323 0.92301 0.76433 0.87967 0.87981 0.91079 0.90811 0.90848 0.90970 0.90585 0.90644 0.87801 0.91455 0.89158 0.89416 0.92468 0.77564 0.91976 0.89079 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.29 37.16 0.35 -1.09 16 2 C 0.15 1.51 2.42 -67.93 -0.16 1.34 16 3 H 0.09 1.09 7.37 -51.93 -0.38 0.71 16 4 N -0.72 -6.69 4.90 -53.80 -0.26 -6.95 16 5 C 0.56 6.27 7.38 -10.99 -0.08 6.19 16 6 O -0.54 -8.19 16.45 5.56 0.09 -8.10 16 7 C -0.18 -1.52 2.60 -154.55 -0.40 -1.92 16 8 C -0.12 -0.86 10.00 -25.42 -0.25 -1.11 16 9 C -0.13 -1.05 6.64 -88.20 -0.59 -1.64 16 10 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 11 C -0.10 -0.64 6.64 -25.08 -0.17 -0.81 16 12 C -0.12 -0.87 6.91 -24.73 -0.17 -1.04 16 13 C -0.09 -0.62 6.18 -25.07 -0.15 -0.77 16 14 C -0.12 -1.33 3.49 -89.69 -0.31 -1.64 16 15 C 0.02 0.26 7.51 -2.77 -0.02 0.24 16 16 N -0.45 -7.41 5.65 -239.75 -1.35 -8.77 16 17 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 18 C 0.45 10.90 7.83 -10.98 -0.09 10.82 16 19 O -0.58 -16.15 16.01 5.55 0.09 -16.07 16 20 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 25 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 29 C 0.01 0.12 6.57 -2.77 -0.02 0.10 16 30 H 0.07 0.56 7.43 -51.93 -0.39 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 2.89 8.12 -40.82 -0.33 2.56 16 34 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.56 7.61 -51.93 -0.39 0.16 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.98 7.29 -51.93 -0.38 0.60 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 46 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 47 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -34.51 406.46 -10.42 -44.94 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -8.41 Total: 10.90 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.34 Total: 0.69 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.95 Total: -54.84 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.18 Total: -24.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.51 -10.42 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700542027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.159 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds