Wall clock time and date at job start Tue Mar 31 2020 18:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 5 5 C 1.34774 * 119.99618 * 275.00242 * 4 2 1 6 6 O 1.21281 * 120.00442 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99927 * 179.97438 * 5 4 2 8 8 C 1.53001 * 119.29838 * 250.94941 * 7 5 4 9 9 C 1.53871 * 121.33426 * 179.11437 * 7 5 4 10 10 H 1.09005 * 121.32992 * 359.43520 * 9 7 5 11 11 C 1.54262 * 106.59988 * 221.93462 * 9 7 5 12 12 C 1.54887 * 104.19835 * 23.60867 * 11 9 7 13 13 C 1.54265 * 117.41442 * 45.28271 * 7 5 4 14 14 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 15 15 C 1.53935 * 113.73341 * 156.73070 * 14 2 1 16 16 N 1.47961 * 86.17773 * 221.92132 * 15 14 2 17 17 C 1.46898 * 111.00396 * 137.58147 * 16 15 14 18 18 C 1.50711 * 109.46820 * 90.63731 * 17 16 15 19 19 O 1.21290 * 119.99904 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99609 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99934 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00135 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00134 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00246 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46921 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46863 * 119.99855 * 25 23 21 28 28 H 1.48494 * 109.46612 * 239.99740 * 25 23 21 29 29 C 1.47964 * 90.76570 * 24.68744 * 16 15 14 30 30 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 33 33 H 0.96990 * 120.00057 * 94.99539 * 4 2 1 34 34 H 1.09008 * 117.45751 * 356.28747 * 8 7 5 35 35 H 1.08997 * 117.46585 * 141.09187 * 8 7 5 36 36 H 1.09002 * 110.48638 * 264.92775 * 11 9 7 37 37 H 1.09003 * 110.60078 * 142.34332 * 11 9 7 38 38 H 1.09002 * 110.75834 * 203.74833 * 12 11 9 39 39 H 1.09000 * 110.91549 * 80.44040 * 12 11 9 40 40 H 1.08997 * 110.49383 * 235.04911 * 13 7 5 41 41 H 1.09000 * 110.48853 * 357.69898 * 13 7 5 42 42 H 1.08999 * 112.93453 * 288.43064 * 14 2 1 43 43 H 1.08997 * 113.75905 * 336.23012 * 15 14 2 44 44 H 1.08998 * 113.76075 * 107.60545 * 15 14 2 45 45 H 1.08995 * 109.47189 * 210.63810 * 17 16 15 46 46 H 1.08995 * 109.46825 * 330.64243 * 17 16 15 47 47 H 0.97001 * 120.00525 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00548 * 180.02562 * 24 23 21 49 49 H 1.08999 * 113.75804 * 220.99323 * 29 16 15 50 50 H 1.09001 * 113.75673 * 89.62820 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7287 3.5877 8 6 1.6778 -1.0165 4.7345 9 6 2.8267 0.0137 4.9237 10 1 2.6033 1.0766 5.0155 11 6 4.1582 -0.4784 5.5276 12 6 4.9666 -0.9813 4.3058 13 6 3.8785 -1.6462 3.4263 14 6 2.0400 -0.7213 -1.2493 15 6 3.4670 -0.3155 -1.6598 16 7 2.9605 -0.3147 -3.0500 17 6 3.4682 0.8453 -3.7947 18 6 4.7627 0.4787 -4.4739 19 8 5.2172 -0.6389 -4.3501 20 7 5.4151 1.3929 -5.2188 21 6 6.5925 1.0594 -5.8371 22 1 6.9968 0.0640 -5.7276 23 6 7.2655 2.0021 -6.6047 24 7 6.7733 3.2131 -6.7384 25 14 8.8693 1.5474 -7.4477 26 1 9.2055 0.1336 -7.1423 27 1 8.7218 1.7156 -8.9158 28 1 9.9556 2.4317 -6.9547 29 6 1.5822 -0.0739 -2.5687 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 0.6607 -0.6359 4.6393 35 1 1.7750 -1.9733 5.2474 36 1 3.9807 -1.2935 6.2292 37 1 4.6818 0.3408 6.0204 38 1 5.7153 -1.7118 4.6121 39 1 5.4337 -0.1491 3.7791 40 1 3.6560 -2.6498 3.7887 41 1 4.1970 -1.6776 2.3844 42 1 1.8824 -1.7992 -1.2115 43 1 3.7640 0.6697 -1.3002 44 1 4.2152 -1.0839 -1.4654 45 1 2.7362 1.1441 -4.5449 46 1 3.6408 1.6721 -3.1058 47 1 5.0518 2.2869 -5.3175 48 1 7.2429 3.8711 -7.2746 49 1 0.8245 -0.6494 -3.1006 50 1 1.3280 0.9819 -2.4749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700542027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:50 Heat of formation + Delta-G solvation = -41.947436 kcal Electronic energy + Delta-G solvation = -28839.905013 eV Core-core repulsion = 24867.465396 eV Total energy + Delta-G solvation = -3972.439617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76926 -41.13242 -39.74391 -39.02982 -36.39954 -35.90697 -33.33879 -32.70450 -32.45098 -30.71536 -29.17218 -27.61023 -26.94596 -25.74303 -24.65532 -23.35660 -22.33637 -21.30950 -21.08050 -20.98651 -19.97788 -19.76274 -18.17758 -17.81430 -17.53250 -16.70694 -16.59731 -16.48396 -16.17413 -16.08060 -15.70520 -15.40780 -15.18162 -14.80660 -14.55769 -14.26232 -14.10323 -14.02705 -13.88752 -13.71684 -13.54425 -13.37787 -13.00431 -12.80528 -12.76614 -12.67877 -12.43145 -12.13982 -12.06860 -12.03795 -11.90461 -11.84081 -11.79415 -11.67043 -11.52192 -11.33351 -10.70701 -10.64154 -10.40090 -10.16290 -10.03149 -9.63305 -8.48492 -5.97545 1.34906 1.39587 1.48906 1.54300 2.03532 2.09125 2.27112 2.58898 2.76030 3.17343 3.27982 3.43402 3.46864 3.59442 3.61084 3.73437 3.91645 4.11859 4.14686 4.21126 4.24844 4.30035 4.39001 4.41310 4.44695 4.47539 4.49483 4.51245 4.64186 4.73971 4.74456 4.78333 4.80818 4.82068 4.93859 4.95822 5.02828 5.14584 5.17595 5.19043 5.26396 5.29125 5.38373 5.41251 5.44614 5.52854 5.88122 6.06830 6.53945 6.58616 7.11123 7.23267 7.54367 8.10646 8.69337 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.002213 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.292337 B =12650.949432 C =13825.651621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.063 0.937 4 N -0.707 5.707 5 C 0.551 3.449 6 O -0.588 6.588 7 C -0.187 4.187 8 C -0.103 4.103 9 C -0.143 4.143 10 H 0.096 0.904 11 C -0.091 4.091 12 C -0.127 4.127 13 C -0.083 4.083 14 C -0.097 4.097 15 C 0.010 3.990 16 N -0.480 5.480 17 C 0.022 3.978 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.270 1.270 29 C 0.016 3.984 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.414 0.586 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.110 0.890 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.383 -8.717 23.429 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.081 0.919 4 N -0.358 5.358 5 C 0.339 3.661 6 O -0.469 6.469 7 C -0.191 4.191 8 C -0.140 4.140 9 C -0.161 4.161 10 H 0.115 0.885 11 C -0.128 4.128 12 C -0.164 4.164 13 C -0.121 4.121 14 C -0.116 4.116 15 C -0.119 4.119 16 N -0.203 5.203 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.215 5.215 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.112 4.112 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.128 0.872 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.056 -9.004 22.946 27.894 hybrid contribution 0.806 1.297 -0.530 1.617 sum -12.250 -7.706 22.416 26.682 Atomic orbital electron populations 1.22072 0.93456 1.03282 1.02353 1.20941 0.95192 0.95887 0.83034 0.91897 1.45920 1.66503 1.14598 1.08748 1.19875 0.75919 0.85904 0.84416 1.90674 1.52573 1.17899 1.85724 1.22488 1.02874 1.05038 0.88656 1.23568 0.93949 1.00802 0.95680 1.23813 0.97949 0.97970 0.96407 0.88534 1.21992 0.92084 1.01377 0.97358 1.22710 0.97826 1.00140 0.95772 1.21991 0.90941 0.98285 1.00863 1.23128 0.93758 1.02004 0.92719 1.23986 0.98103 1.00786 0.89025 1.68343 1.04665 1.35592 1.11679 1.22361 0.95032 0.93939 0.99608 1.20802 0.87894 0.85361 0.83009 1.90474 1.70351 1.23198 1.66334 1.41979 1.21606 1.13474 1.44440 1.19686 0.99848 0.98969 1.27681 0.90454 1.26068 1.02809 0.94733 0.97824 1.69678 1.41318 1.04355 1.40952 0.84860 0.77128 0.78245 0.78036 1.19778 1.19440 1.19553 1.24086 0.92057 1.01292 0.93807 0.90200 0.90567 0.93823 0.74949 0.88443 0.85213 0.89018 0.90925 0.89207 0.93115 0.88165 0.91382 0.86067 0.92162 0.90938 0.87293 0.90892 0.77107 0.91293 0.87177 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.29 71.98 0.67 -1.77 16 2 C 0.15 2.96 2.42 44.99 0.11 3.06 16 3 H 0.06 1.57 7.37 -2.39 -0.02 1.55 16 4 N -0.71 -12.61 4.90 -442.52 -2.17 -14.78 16 5 C 0.55 12.45 7.38 87.66 0.65 13.10 16 6 O -0.59 -18.54 16.45 -3.03 -0.05 -18.59 16 7 C -0.19 -3.04 2.60 -52.21 -0.14 -3.18 16 8 C -0.10 -1.25 10.00 31.44 0.31 -0.93 16 9 C -0.14 -2.29 6.64 -9.22 -0.06 -2.35 16 10 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 11 C -0.09 -1.08 6.64 31.67 0.21 -0.87 16 12 C -0.13 -1.65 6.91 31.89 0.22 -1.43 16 13 C -0.08 -1.04 6.18 31.67 0.20 -0.84 16 14 C -0.10 -1.89 3.49 -10.15 -0.04 -1.92 16 15 C 0.01 0.29 7.51 86.41 0.65 0.94 16 16 N -0.48 -15.44 5.65 -912.44 -5.15 -20.60 16 17 C 0.02 0.80 5.28 85.56 0.45 1.25 16 18 C 0.44 22.00 7.83 87.66 0.69 22.68 16 19 O -0.62 -35.74 16.01 -3.06 -0.05 -35.79 16 20 N -0.58 -30.75 5.29 -306.98 -1.62 -32.37 16 21 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 25 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 C 0.02 0.34 6.57 86.40 0.57 0.91 16 30 H 0.08 1.10 7.43 -2.39 -0.02 1.08 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.41 5.29 8.12 -92.72 -0.75 4.54 16 34 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.94 7.61 -2.39 -0.02 0.92 16 42 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 1.80 7.29 -2.39 -0.02 1.78 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.11 3.43 8.08 -2.39 -0.02 3.41 16 46 H 0.07 2.38 7.38 -2.39 -0.02 2.37 16 47 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 48 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.08 1.58 7.85 -2.39 -0.02 1.56 16 Total: -1.00 -77.55 406.46 -1.50 -79.05 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.53 Total: 38.12 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.77 Total: 9.70 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -8.67 Total: -118.32 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.10 Total: -54.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -77.55 -1.50 -79.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700542027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.105 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds