Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46677 * 2 1 4 4 N 1.46492 * 109.47289 * 239.99406 * 2 1 3 5 5 C 1.34781 * 119.99776 * 85.00241 * 4 2 1 6 6 O 1.21279 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99949 * 180.02562 * 5 4 2 8 8 C 1.53004 * 119.29432 * 250.95154 * 7 5 4 9 9 C 1.53873 * 121.32746 * 179.12128 * 7 5 4 10 10 H 1.08997 * 121.33171 * 359.42317 * 9 7 5 11 11 C 1.54273 * 106.59244 * 221.93313 * 9 7 5 12 12 C 1.54884 * 104.19716 * 23.60949 * 11 9 7 13 13 C 1.54254 * 117.41240 * 45.29036 * 7 5 4 14 14 C 1.53001 * 109.46924 * 119.99603 * 2 1 3 15 15 C 1.53937 * 113.73373 * 300.00388 * 14 2 1 16 16 N 1.47955 * 86.18157 * 221.91843 * 15 14 2 17 17 C 1.46898 * 111.00208 * 137.57726 * 16 15 14 18 18 C 1.50704 * 109.47447 * 170.00164 * 17 16 15 19 19 O 1.21293 * 119.99508 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00067 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99701 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99976 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99564 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00246 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99690 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46962 * 90.00517 * 25 23 21 27 27 H 1.48503 * 109.47169 * 210.00296 * 25 23 21 28 28 H 1.48506 * 109.46987 * 330.00303 * 25 23 21 29 29 C 1.47967 * 90.76348 * 24.68862 * 16 15 14 30 30 H 1.09004 * 109.46969 * 60.00380 * 1 2 3 31 31 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47717 * 300.00636 * 1 2 3 33 33 H 0.96999 * 120.00434 * 265.00011 * 4 2 1 34 34 H 1.09000 * 117.46069 * 356.28598 * 8 7 5 35 35 H 1.08996 * 117.46104 * 141.09759 * 8 7 5 36 36 H 1.08996 * 110.48271 * 264.92747 * 11 9 7 37 37 H 1.09004 * 110.59729 * 142.34010 * 11 9 7 38 38 H 1.09002 * 110.75770 * 203.74146 * 12 11 9 39 39 H 1.09004 * 110.91757 * 80.44267 * 12 11 9 40 40 H 1.09001 * 110.49099 * 235.04715 * 13 7 5 41 41 H 1.08994 * 110.49043 * 357.69115 * 13 7 5 42 42 H 1.08998 * 113.01024 * 71.63273 * 14 2 1 43 43 H 1.09005 * 113.75745 * 336.23566 * 15 14 2 44 44 H 1.08996 * 113.76539 * 107.60252 * 15 14 2 45 45 H 1.09002 * 109.47503 * 290.00559 * 17 16 15 46 46 H 1.09001 * 109.46828 * 50.00321 * 17 16 15 47 47 H 0.96992 * 119.99963 * 0.02562 * 20 18 17 48 48 H 0.97007 * 119.99574 * 179.97438 * 24 23 21 49 49 H 1.08994 * 113.76237 * 220.99251 * 29 16 15 50 50 H 1.09006 * 113.85968 * 89.63644 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6490 -0.7290 -3.5876 8 6 4.0474 -0.4085 -4.1193 9 6 2.7888 0.0036 -4.9335 10 1 2.5200 1.0548 -5.0372 11 6 2.2700 -0.9636 -6.0176 12 6 1.3199 -1.9178 -5.2522 13 6 2.0502 -2.1157 -3.9007 14 6 2.0399 -0.7212 1.2493 15 6 1.5821 -0.0738 2.5687 16 7 2.9602 -0.3145 3.0502 17 6 3.4680 0.8456 3.7947 18 6 4.7624 0.4792 4.4740 19 8 5.2174 -0.6382 4.3497 20 7 5.4144 1.3932 5.2196 21 6 6.5922 1.0600 5.8372 22 1 6.9973 0.0651 5.7265 23 6 7.2646 2.0025 6.6055 24 7 6.7714 3.2130 6.7406 25 14 8.8691 1.5483 7.4475 26 1 10.0058 1.8432 6.5386 27 1 9.0147 2.3402 8.6953 28 1 8.8621 0.1005 7.7780 29 6 3.4669 -0.3153 1.6599 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1524 34 1 4.6091 0.3774 -3.6144 35 1 4.6415 -1.2378 -4.5032 36 1 3.0964 -1.5209 -6.4586 37 1 1.7241 -0.4190 -6.7881 38 1 1.2184 -2.8666 -5.7792 39 1 0.3443 -1.4560 -5.1000 40 1 2.8411 -2.8593 -3.9999 41 1 1.3437 -2.4102 -3.1248 42 1 1.8839 -1.7993 1.2125 43 1 1.3279 0.9821 2.4748 44 1 0.8244 -0.6491 3.1006 45 1 3.6406 1.6724 3.1057 46 1 2.7359 1.1445 4.5449 47 1 5.0503 2.2867 5.3193 48 1 7.2407 3.8708 7.2773 49 1 4.2151 -1.0837 1.4656 50 1 3.7646 0.6691 1.2986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700542028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = -16.708338 kcal Electronic energy + Delta-G solvation = -28739.285422 eV Core-core repulsion = 24767.940255 eV Total energy + Delta-G solvation = -3971.345167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90940 -40.09646 -38.41436 -37.67823 -35.39150 -33.85091 -32.02009 -31.68104 -31.15987 -29.50060 -28.62095 -26.28578 -25.54681 -24.48253 -23.63420 -22.62643 -21.42944 -20.66572 -20.18257 -19.26486 -18.91048 -17.85810 -17.39922 -16.60653 -16.06561 -15.78437 -15.45356 -15.24695 -14.86260 -14.67592 -14.57711 -14.15186 -13.79917 -13.70952 -13.56933 -13.40273 -13.37265 -13.04989 -12.70662 -12.54754 -12.33290 -12.15891 -11.85912 -11.60552 -11.56476 -11.50297 -11.37787 -11.33913 -11.05464 -10.95119 -10.71953 -10.64932 -10.63363 -10.37203 -10.18512 -10.09521 -9.81843 -9.46992 -9.28717 -8.68396 -8.13795 -7.92681 -6.38444 -3.79157 2.32460 2.86090 3.19682 3.24857 3.27852 3.33985 3.91447 3.96751 4.00750 4.20132 4.22244 4.29061 4.39206 4.54090 4.55800 4.79108 4.91343 4.98847 5.02289 5.03748 5.14668 5.16810 5.22468 5.24618 5.25998 5.37113 5.40280 5.41178 5.45443 5.49127 5.53485 5.61199 5.65554 5.68285 5.71378 5.77237 5.79238 5.79793 5.93028 5.96902 6.03045 6.16738 6.31134 6.36450 6.61231 7.20121 7.32077 7.58020 8.05637 8.09543 8.65863 9.21778 9.58482 10.11047 10.79480 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.002049 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.813755 B =13662.996563 C =14452.446559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.717 5.717 5 C 0.557 3.443 6 O -0.541 6.541 7 C -0.179 4.179 8 C -0.122 4.122 9 C -0.129 4.129 10 H 0.120 0.880 11 C -0.097 4.097 12 C -0.123 4.123 13 C -0.087 4.087 14 C -0.125 4.125 15 C 0.010 3.990 16 N -0.449 5.449 17 C 0.009 3.991 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.018 3.982 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.090 0.910 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 -7.719 -23.067 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.368 5.368 5 C 0.344 3.656 6 O -0.418 6.418 7 C -0.182 4.182 8 C -0.159 4.159 9 C -0.148 4.148 10 H 0.138 0.862 11 C -0.135 4.135 12 C -0.160 4.160 13 C -0.125 4.125 14 C -0.144 4.144 15 C -0.120 4.120 16 N -0.171 5.171 17 C -0.123 4.123 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.111 4.111 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.323 -8.004 -22.590 27.421 hybrid contribution 0.564 0.870 0.323 1.086 sum -12.759 -7.134 -22.267 26.637 Atomic orbital electron populations 1.22138 0.94993 1.02205 1.02574 1.21064 0.94162 0.97215 0.83049 0.89406 1.45987 1.67306 1.14204 1.09315 1.19349 0.76666 0.86346 0.83279 1.90699 1.50095 1.15997 1.84984 1.22431 1.02652 0.98260 0.94827 1.23499 0.88678 1.03113 1.00610 1.23752 1.00960 0.99891 0.90192 0.86233 1.21998 0.98742 0.96195 0.96540 1.22677 0.98886 0.99428 0.95059 1.21947 0.99459 0.93297 0.97751 1.23313 0.97019 1.01140 0.92938 1.23961 0.94241 0.99925 0.93848 1.68380 1.01874 1.36020 1.10797 1.22485 0.98052 0.92734 0.98987 1.19694 0.86554 0.86364 0.84183 1.90514 1.68777 1.21472 1.65169 1.41881 1.21731 1.13005 1.43894 1.19690 0.98041 0.99416 1.25541 0.87991 1.25256 0.99862 0.95025 0.97926 1.69617 1.40141 1.03834 1.40882 0.85863 0.81351 0.78645 0.78456 1.20457 1.20944 1.19434 1.23980 0.96219 1.01530 0.89378 0.92268 0.92351 0.91292 0.76436 0.87722 0.87879 0.91004 0.90864 0.90948 0.91196 0.90487 0.90930 0.87810 0.91193 0.89085 0.92469 0.89423 0.77561 0.91936 0.89148 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.29 37.16 0.35 -1.09 16 2 C 0.15 1.51 2.41 -67.93 -0.16 1.35 16 3 H 0.09 1.09 7.37 -51.93 -0.38 0.71 16 4 N -0.72 -6.70 4.90 -53.81 -0.26 -6.96 16 5 C 0.56 6.27 7.38 -10.98 -0.08 6.19 16 6 O -0.54 -8.19 16.45 5.56 0.09 -8.09 16 7 C -0.18 -1.52 2.60 -154.54 -0.40 -1.92 16 8 C -0.12 -0.95 10.00 -25.42 -0.25 -1.21 16 9 C -0.13 -1.06 6.64 -88.19 -0.59 -1.65 16 10 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 11 C -0.10 -0.59 6.64 -25.07 -0.17 -0.75 16 12 C -0.12 -0.71 6.91 -24.74 -0.17 -0.88 16 13 C -0.09 -0.54 6.18 -25.08 -0.16 -0.69 16 14 C -0.12 -1.33 3.49 -89.69 -0.31 -1.64 16 15 C 0.01 0.12 6.57 -2.77 -0.02 0.10 16 16 N -0.45 -7.43 5.65 -239.73 -1.35 -8.79 16 17 C 0.01 0.17 5.28 -4.97 -0.03 0.15 16 18 C 0.45 10.91 7.83 -10.99 -0.09 10.82 16 19 O -0.58 -16.18 16.01 5.55 0.09 -16.09 16 20 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C 0.02 0.26 7.51 -2.76 -0.02 0.24 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.56 7.43 -51.93 -0.39 0.18 16 33 H 0.40 2.90 8.12 -40.82 -0.33 2.57 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.42 7.61 -51.93 -0.40 0.03 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 46 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 47 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.07 0.98 7.30 -51.93 -0.38 0.60 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -34.52 406.47 -10.42 -44.94 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.41 Total: 10.73 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.34 Total: 0.87 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.95 Total: -54.86 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.18 Total: -24.18 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.52 -10.42 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700542028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.236 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds