Wall clock time and date at job start Tue Mar 31 2020 18:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46677 * 2 1 4 4 N 1.46492 * 109.47289 * 239.99406 * 2 1 3 5 5 C 1.34781 * 119.99776 * 85.00241 * 4 2 1 6 6 O 1.21279 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99949 * 180.02562 * 5 4 2 8 8 C 1.53004 * 119.29432 * 250.95154 * 7 5 4 9 9 C 1.53873 * 121.32746 * 179.12128 * 7 5 4 10 10 H 1.08997 * 121.33171 * 359.42317 * 9 7 5 11 11 C 1.54273 * 106.59244 * 221.93313 * 9 7 5 12 12 C 1.54884 * 104.19716 * 23.60949 * 11 9 7 13 13 C 1.54254 * 117.41240 * 45.29036 * 7 5 4 14 14 C 1.53001 * 109.46924 * 119.99603 * 2 1 3 15 15 C 1.53937 * 113.73373 * 300.00388 * 14 2 1 16 16 N 1.47955 * 86.18157 * 221.91843 * 15 14 2 17 17 C 1.46898 * 111.00208 * 137.57726 * 16 15 14 18 18 C 1.50704 * 109.47447 * 170.00164 * 17 16 15 19 19 O 1.21293 * 119.99508 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00067 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99701 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99976 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99564 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00246 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99690 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46962 * 90.00517 * 25 23 21 27 27 H 1.48503 * 109.47169 * 210.00296 * 25 23 21 28 28 H 1.48506 * 109.46987 * 330.00303 * 25 23 21 29 29 C 1.47967 * 90.76348 * 24.68862 * 16 15 14 30 30 H 1.09004 * 109.46969 * 60.00380 * 1 2 3 31 31 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47717 * 300.00636 * 1 2 3 33 33 H 0.96999 * 120.00434 * 265.00011 * 4 2 1 34 34 H 1.09000 * 117.46069 * 356.28598 * 8 7 5 35 35 H 1.08996 * 117.46104 * 141.09759 * 8 7 5 36 36 H 1.08996 * 110.48271 * 264.92747 * 11 9 7 37 37 H 1.09004 * 110.59729 * 142.34010 * 11 9 7 38 38 H 1.09002 * 110.75770 * 203.74146 * 12 11 9 39 39 H 1.09004 * 110.91757 * 80.44267 * 12 11 9 40 40 H 1.09001 * 110.49099 * 235.04715 * 13 7 5 41 41 H 1.08994 * 110.49043 * 357.69115 * 13 7 5 42 42 H 1.08998 * 113.01024 * 71.63273 * 14 2 1 43 43 H 1.09005 * 113.75745 * 336.23566 * 15 14 2 44 44 H 1.08996 * 113.76539 * 107.60252 * 15 14 2 45 45 H 1.09002 * 109.47503 * 290.00559 * 17 16 15 46 46 H 1.09001 * 109.46828 * 50.00321 * 17 16 15 47 47 H 0.96992 * 119.99963 * 0.02562 * 20 18 17 48 48 H 0.97007 * 119.99574 * 179.97438 * 24 23 21 49 49 H 1.08994 * 113.76237 * 220.99251 * 29 16 15 50 50 H 1.09006 * 113.85968 * 89.63644 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6490 -0.7290 -3.5876 8 6 4.0474 -0.4085 -4.1193 9 6 2.7888 0.0036 -4.9335 10 1 2.5200 1.0548 -5.0372 11 6 2.2700 -0.9636 -6.0176 12 6 1.3199 -1.9178 -5.2522 13 6 2.0502 -2.1157 -3.9007 14 6 2.0399 -0.7212 1.2493 15 6 1.5821 -0.0738 2.5687 16 7 2.9602 -0.3145 3.0502 17 6 3.4680 0.8456 3.7947 18 6 4.7624 0.4792 4.4740 19 8 5.2174 -0.6382 4.3497 20 7 5.4144 1.3932 5.2196 21 6 6.5922 1.0600 5.8372 22 1 6.9973 0.0651 5.7265 23 6 7.2646 2.0025 6.6055 24 7 6.7714 3.2130 6.7406 25 14 8.8691 1.5483 7.4475 26 1 10.0058 1.8432 6.5386 27 1 9.0147 2.3402 8.6953 28 1 8.8621 0.1005 7.7780 29 6 3.4669 -0.3153 1.6599 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1524 34 1 4.6091 0.3774 -3.6144 35 1 4.6415 -1.2378 -4.5032 36 1 3.0964 -1.5209 -6.4586 37 1 1.7241 -0.4190 -6.7881 38 1 1.2184 -2.8666 -5.7792 39 1 0.3443 -1.4560 -5.1000 40 1 2.8411 -2.8593 -3.9999 41 1 1.3437 -2.4102 -3.1248 42 1 1.8839 -1.7993 1.2125 43 1 1.3279 0.9821 2.4748 44 1 0.8244 -0.6491 3.1006 45 1 3.6406 1.6724 3.1057 46 1 2.7359 1.1445 4.5449 47 1 5.0503 2.2867 5.3193 48 1 7.2407 3.8708 7.2773 49 1 4.2151 -1.0837 1.4656 50 1 3.7646 0.6691 1.2986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700542028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:53 Heat of formation + Delta-G solvation = -41.873336 kcal Electronic energy + Delta-G solvation = -28740.376658 eV Core-core repulsion = 24767.940255 eV Total energy + Delta-G solvation = -3972.436404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76999 -41.13334 -39.74197 -39.02935 -36.40348 -35.90492 -33.33621 -32.70564 -32.43923 -30.70156 -29.18746 -27.60559 -26.94273 -25.74597 -24.66422 -23.33520 -22.34653 -21.30556 -21.07401 -20.98375 -19.97876 -19.76437 -18.17805 -17.81142 -17.52388 -16.70683 -16.56576 -16.48589 -16.33605 -15.91073 -15.70289 -15.47568 -15.14625 -14.87142 -14.40873 -14.27105 -14.10071 -14.04079 -13.92488 -13.71418 -13.53713 -13.40413 -13.00001 -12.84803 -12.72577 -12.66995 -12.43944 -12.14557 -12.07404 -12.01967 -11.88631 -11.83014 -11.79292 -11.66760 -11.51375 -11.32997 -10.71952 -10.64325 -10.39854 -10.16215 -10.02999 -9.63367 -8.48112 -5.97221 1.36467 1.39668 1.48284 1.53001 2.03792 2.07595 2.27312 2.59461 2.76276 3.17583 3.28055 3.43573 3.46675 3.60722 3.61043 3.75018 3.88813 4.12061 4.14614 4.21251 4.24252 4.30755 4.40173 4.41112 4.44776 4.47932 4.49903 4.51425 4.64983 4.73059 4.74440 4.78422 4.80540 4.82418 4.94324 4.96974 5.03787 5.16361 5.17673 5.19694 5.26307 5.28995 5.38392 5.41409 5.46217 5.52728 5.88299 6.06994 6.53582 6.58894 7.11208 7.22817 7.54561 8.10886 8.69379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.002049 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.813755 B =13662.996563 C =14452.446559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.063 0.937 4 N -0.707 5.707 5 C 0.551 3.449 6 O -0.588 6.588 7 C -0.185 4.185 8 C -0.118 4.118 9 C -0.138 4.138 10 H 0.097 0.903 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.082 4.082 14 C -0.097 4.097 15 C 0.016 3.984 16 N -0.481 5.481 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.010 3.990 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.072 0.928 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 -9.018 -23.655 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.081 0.919 4 N -0.358 5.358 5 C 0.339 3.661 6 O -0.468 6.468 7 C -0.188 4.188 8 C -0.155 4.155 9 C -0.157 4.157 10 H 0.115 0.885 11 C -0.130 4.130 12 C -0.159 4.159 13 C -0.119 4.119 14 C -0.116 4.116 15 C -0.112 4.112 16 N -0.203 5.203 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.119 4.119 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.251 0.749 34 H 0.106 0.894 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.211 -9.312 -23.178 28.738 hybrid contribution 0.821 1.302 0.499 1.618 sum -13.390 -8.010 -22.679 27.528 Atomic orbital electron populations 1.22076 0.93483 1.03293 1.02336 1.20937 0.95158 0.95903 0.83024 0.91874 1.45919 1.66465 1.14716 1.08659 1.19876 0.75953 0.85919 0.84373 1.90673 1.52280 1.18091 1.85795 1.22523 1.03099 0.99553 0.93612 1.23550 0.88518 1.03329 1.00126 1.23817 1.01335 0.99400 0.91131 0.88523 1.22018 0.99281 0.95807 0.95863 1.22687 0.98134 1.00132 0.94922 1.22001 0.99961 0.91881 0.98107 1.23125 0.93762 1.02003 0.92702 1.24085 0.92052 1.01296 0.93804 1.68347 1.04673 1.35597 1.11686 1.22359 0.95023 0.93935 0.99605 1.20805 0.87909 0.85365 0.83026 1.90474 1.70339 1.23211 1.66354 1.41971 1.21558 1.13512 1.44414 1.19654 0.99849 0.99040 1.27744 0.90423 1.26074 1.02826 0.94758 0.97819 1.69678 1.41267 1.04361 1.40923 0.84912 0.77259 0.78231 0.77827 1.19612 1.19410 1.19735 1.23987 0.98108 1.00820 0.89008 0.93886 0.90540 0.90185 0.74932 0.89390 0.85513 0.89484 0.90562 0.88936 0.92216 0.88749 0.90446 0.86062 0.89815 0.87182 0.90872 0.87306 0.77105 0.91301 0.90970 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.29 71.98 0.67 -1.78 16 2 C 0.15 2.95 2.41 44.99 0.11 3.06 16 3 H 0.06 1.57 7.37 -2.39 -0.02 1.55 16 4 N -0.71 -12.57 4.90 -442.53 -2.17 -14.74 16 5 C 0.55 12.47 7.38 87.66 0.65 13.12 16 6 O -0.59 -18.57 16.45 -3.03 -0.05 -18.62 16 7 C -0.18 -3.03 2.60 -52.20 -0.14 -3.16 16 8 C -0.12 -1.79 10.00 31.44 0.31 -1.47 16 9 C -0.14 -2.25 6.64 -9.22 -0.06 -2.31 16 10 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 11 C -0.09 -0.96 6.64 31.67 0.21 -0.75 16 12 C -0.12 -1.13 6.91 31.88 0.22 -0.91 16 13 C -0.08 -0.83 6.18 31.67 0.20 -0.63 16 14 C -0.10 -1.88 3.49 -10.15 -0.04 -1.92 16 15 C 0.02 0.34 6.57 86.41 0.57 0.91 16 16 N -0.48 -15.45 5.65 -912.38 -5.15 -20.61 16 17 C 0.02 0.81 5.28 85.56 0.45 1.26 16 18 C 0.44 21.97 7.83 87.66 0.69 22.66 16 19 O -0.62 -35.75 16.01 -3.07 -0.05 -35.80 16 20 N -0.58 -30.71 5.29 -306.98 -1.62 -32.33 16 21 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.92 -50.79 13.05 21.66 0.28 -50.51 16 25 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 C 0.01 0.28 7.51 86.40 0.65 0.93 16 30 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 1.10 7.43 -2.39 -0.02 1.09 16 33 H 0.41 5.25 8.12 -92.71 -0.75 4.50 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.71 7.61 -2.39 -0.02 0.69 16 42 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 1.58 7.85 -2.38 -0.02 1.56 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 2.38 7.38 -2.39 -0.02 2.37 16 46 H 0.11 3.42 8.08 -2.39 -0.02 3.40 16 47 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 48 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.06 1.80 7.30 -2.38 -0.02 1.79 16 Total: -1.00 -77.46 406.47 -1.51 -78.96 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.53 Total: 37.84 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.77 Total: 9.98 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -8.67 Total: -118.19 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.10 Total: -54.41 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -77.46 -1.51 -78.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700542028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.089 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds