Wall clock time and date at job start Tue Mar 31 2020 18:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47054 * 2 1 4 4 N 1.46500 * 109.46539 * 239.99974 * 2 1 3 5 5 C 1.34784 * 119.99678 * 85.00815 * 4 2 1 6 6 O 1.21273 * 120.00060 * 359.97438 * 5 4 2 7 7 C 1.50710 * 119.99522 * 179.97438 * 5 4 2 8 8 C 1.53887 * 113.58305 * 179.97438 * 7 5 4 9 9 C 1.53259 * 86.97745 * 139.52492 * 8 7 5 10 10 C 1.52460 * 128.58090 * 194.93046 * 9 8 7 11 11 C 1.52457 * 128.58122 * 114.98910 * 9 8 7 12 12 C 1.53442 * 87.62746 * 334.99039 * 9 8 7 13 13 C 1.53003 * 109.47058 * 120.00413 * 2 1 3 14 14 C 1.53937 * 113.73139 * 281.86380 * 13 2 1 15 15 N 1.48190 * 86.10030 * 221.95977 * 14 13 2 16 16 C 1.46900 * 111.06842 * 137.52264 * 15 14 13 17 17 C 1.50696 * 109.46967 * 90.56820 * 16 15 14 18 18 O 1.21295 * 120.00477 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00116 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00168 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99986 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99893 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00060 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00029 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46883 * 90.00466 * 24 22 20 26 26 H 1.48502 * 109.47317 * 210.00044 * 24 22 20 27 27 H 1.48499 * 109.47372 * 330.00609 * 24 22 20 28 28 C 1.47957 * 90.80086 * 24.60090 * 15 14 13 29 29 H 1.09008 * 109.46852 * 300.08615 * 1 2 3 30 30 H 1.08996 * 109.47265 * 60.08314 * 1 2 3 31 31 H 1.08993 * 109.47183 * 180.08828 * 1 2 3 32 32 H 0.97002 * 120.00522 * 264.99271 * 4 2 1 33 33 H 1.08995 * 112.82717 * 48.88032 * 7 5 4 34 34 H 1.08995 * 113.64667 * 254.07107 * 8 7 5 35 35 H 1.09005 * 113.64474 * 24.98533 * 8 7 5 36 36 H 1.08995 * 117.51989 * 349.85161 * 10 9 8 37 37 H 1.09006 * 117.51161 * 134.95456 * 10 9 8 38 38 H 1.09003 * 117.51269 * 225.04693 * 11 9 8 39 39 H 1.08999 * 117.51754 * 10.11139 * 11 9 8 40 40 H 1.08998 * 113.56745 * 270.50890 * 12 9 8 41 41 H 1.08998 * 113.78320 * 139.53734 * 12 9 8 42 42 H 1.09000 * 112.93755 * 53.43285 * 13 2 1 43 43 H 1.08999 * 113.76079 * 336.24552 * 14 13 2 44 44 H 1.09006 * 113.75703 * 107.60385 * 14 13 2 45 45 H 1.09001 * 109.46686 * 210.56519 * 16 15 14 46 46 H 1.08995 * 109.47076 * 330.56597 * 16 15 14 47 47 H 0.97001 * 119.99855 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00121 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76342 * 221.08416 * 28 15 14 50 50 H 1.08999 * 113.85975 * 89.72775 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8583 1.1585 -2.4116 7 6 2.6498 -0.7285 -3.5876 8 6 2.7386 0.1773 -4.8284 9 6 4.0613 -0.5277 -5.1482 10 6 5.1527 -0.1039 -6.1247 11 6 4.3998 -1.4202 -6.3369 12 6 4.1833 -0.8398 -3.6508 13 6 2.0400 -0.7214 1.2492 14 6 1.9734 0.1326 2.5283 15 7 3.3110 -0.4204 2.8459 16 6 4.2041 0.6235 3.3662 17 6 4.0866 0.6824 4.8675 18 8 3.3328 -0.0707 5.4470 19 7 4.8192 1.5720 5.5663 20 6 4.7120 1.6261 6.9320 21 1 4.0408 0.9555 7.4479 22 6 5.4669 2.5436 7.6524 23 7 5.3645 2.5950 8.9615 24 14 6.6284 3.7030 6.7601 25 1 5.9060 4.9510 6.4051 26 1 7.7767 4.0299 7.6432 27 1 7.1258 3.0499 5.5226 28 6 3.5701 -0.6731 1.4112 29 1 -0.3633 0.5152 0.8893 30 1 -0.3633 0.5125 -0.8907 31 1 -0.3633 -1.0276 0.0016 32 1 2.2490 -1.6318 -1.1527 33 1 2.1345 -1.6711 -3.7719 34 1 1.9550 -0.0091 -5.5628 35 1 2.8532 1.2349 -4.5903 36 1 4.9293 0.7191 -6.8035 37 1 6.1859 -0.1642 -5.7824 38 1 4.9377 -2.3463 -6.1342 39 1 3.6809 -1.4634 -7.1551 40 1 4.7016 -0.0656 -3.0851 41 1 4.5580 -1.8414 -3.4397 42 1 1.6178 -1.7195 1.3655 43 1 1.9753 1.2062 2.3402 44 1 1.1925 -0.1772 3.2229 45 1 5.2330 0.3916 3.0911 46 1 3.9227 1.5871 2.9416 47 1 5.4218 2.1746 5.1029 48 1 5.8918 3.2353 9.4645 49 1 4.0628 -1.6254 1.2149 50 1 4.0402 0.1633 0.8941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700543732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:06 Heat of formation + Delta-G solvation = 14.902754 kcal Electronic energy + Delta-G solvation = -28478.612106 eV Core-core repulsion = 24508.637698 eV Total energy + Delta-G solvation = -3969.974408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95260 -40.16406 -38.72872 -37.89301 -35.46700 -34.04660 -33.90225 -31.74053 -31.45963 -29.59923 -26.31882 -26.18982 -25.87741 -25.18712 -23.79042 -22.89997 -21.61285 -20.64162 -19.66399 -19.32260 -18.79580 -18.32128 -17.45614 -16.68582 -16.06504 -15.95327 -15.63159 -15.53755 -15.31928 -14.82105 -14.75806 -14.68736 -14.14728 -13.59991 -13.38529 -13.12159 -12.96730 -12.86548 -12.73865 -12.64983 -12.49146 -12.44867 -12.17315 -11.99479 -11.93663 -11.91726 -11.41687 -11.16572 -10.97504 -10.92048 -10.79572 -10.74637 -10.64254 -10.58049 -10.16588 -9.95330 -9.84633 -9.53729 -9.35195 -8.79715 -8.27144 -8.14822 -6.28608 -3.79784 2.35799 2.83281 3.03998 3.08070 3.16183 3.30976 3.76694 3.84815 3.87670 4.08109 4.12175 4.18866 4.26785 4.36509 4.44409 4.48840 4.71542 4.78712 4.85399 4.97884 5.10286 5.16052 5.18630 5.20830 5.21839 5.29256 5.34980 5.35613 5.37257 5.41351 5.49667 5.55032 5.56484 5.58803 5.63566 5.68710 5.71413 5.77049 5.88193 5.88660 5.96784 5.97736 6.16594 6.27704 6.48775 7.07381 7.24859 7.60914 7.98240 8.17103 8.63408 8.98295 9.45436 9.87516 10.84669 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002066 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.622868 B =13548.773525 C =14580.815693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.721 5.721 5 C 0.523 3.477 6 O -0.540 6.540 7 C -0.133 4.133 8 C -0.075 4.075 9 C -0.165 4.165 10 C -0.165 4.165 11 C -0.151 4.151 12 C -0.081 4.081 13 C -0.126 4.126 14 C 0.022 3.978 15 N -0.449 5.449 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.557 6.557 19 N -0.595 5.595 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.006 3.994 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.401 0.599 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.088 0.912 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -7.334 -31.668 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.372 5.372 5 C 0.309 3.691 6 O -0.416 6.416 7 C -0.154 4.154 8 C -0.113 4.113 9 C -0.165 4.165 10 C -0.202 4.202 11 C -0.188 4.188 12 C -0.118 4.118 13 C -0.145 4.145 14 C -0.107 4.107 15 N -0.171 5.171 16 C -0.125 4.125 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.235 5.235 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.123 4.123 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.235 0.765 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.932 -7.413 -30.578 31.708 hybrid contribution 1.203 1.266 -0.952 1.989 sum -2.729 -6.146 -31.529 32.239 Atomic orbital electron populations 1.22134 0.94899 1.02252 1.02682 1.21051 0.94355 0.97097 0.83055 0.89469 1.46083 1.67348 1.14136 1.09651 1.20479 0.77005 0.87219 0.84351 1.90700 1.49824 1.16114 1.84982 1.22625 0.98050 1.00881 0.93818 1.22377 0.94588 0.99539 0.94794 1.22185 0.98042 1.04423 0.91875 1.22809 0.96840 0.98367 1.02188 1.22796 1.03015 0.94786 0.98188 1.22425 0.93244 1.02513 0.93637 1.23341 0.96373 1.01025 0.93772 1.23977 0.94470 0.97443 0.94836 1.68413 1.01819 1.33317 1.13507 1.22514 0.98910 0.94750 0.96337 1.19592 0.84682 0.83904 0.87737 1.90560 1.39998 1.42576 1.70616 1.42232 1.39516 1.33825 1.07892 1.19422 1.24620 1.19505 0.79636 0.86321 1.25032 0.97950 0.97805 0.95452 1.69623 1.41068 1.36435 1.05176 0.86677 0.81396 0.81671 0.79667 1.19675 1.20185 1.19549 1.23966 0.95667 1.02115 0.90602 0.91206 0.92240 0.92338 0.76540 0.86880 0.91007 0.88247 0.88597 0.88593 0.88528 0.88559 0.89195 0.90471 0.87666 0.91199 0.88603 0.89387 0.92353 0.79816 0.91668 0.89376 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.44 37.16 0.35 -1.08 16 2 C 0.15 1.37 2.29 -67.93 -0.16 1.21 16 3 H 0.09 0.99 7.48 -51.93 -0.39 0.60 16 4 N -0.72 -5.49 4.94 -53.80 -0.27 -5.76 16 5 C 0.52 4.88 7.32 -10.98 -0.08 4.80 16 6 O -0.54 -7.27 15.55 5.56 0.09 -7.18 16 7 C -0.13 -0.87 4.15 -90.84 -0.38 -1.25 16 8 C -0.08 -0.55 7.42 -26.13 -0.19 -0.75 16 9 C -0.17 -1.05 3.10 -154.70 -0.48 -1.53 16 10 C -0.17 -0.97 10.53 -26.94 -0.28 -1.25 16 11 C -0.15 -0.78 10.53 -26.95 -0.28 -1.07 16 12 C -0.08 -0.49 7.65 -26.04 -0.20 -0.69 16 13 C -0.13 -1.23 3.35 -89.68 -0.30 -1.53 16 14 C 0.02 0.29 7.43 -2.63 -0.02 0.28 16 15 N -0.45 -6.99 5.65 -239.52 -1.35 -8.35 16 16 C 0.01 0.12 5.28 -4.98 -0.03 0.09 16 17 C 0.46 10.60 7.83 -10.99 -0.09 10.51 16 18 O -0.56 -15.33 16.01 5.54 0.09 -15.24 16 19 N -0.59 -14.46 5.09 -10.97 -0.06 -14.51 16 20 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 24 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 28 C 0.01 0.06 7.38 -2.76 -0.02 0.04 16 29 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 2.09 8.60 -40.82 -0.35 1.73 16 33 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.91 7.42 -51.93 -0.39 0.53 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.90 7.38 -51.93 -0.38 0.51 16 44 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.32 8.08 -51.93 -0.42 0.91 16 46 H 0.06 0.87 7.39 -51.93 -0.38 0.49 16 47 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 LS Contribution 408.60 15.07 6.16 6.16 Total: -1.00 -35.41 408.60 -10.11 -45.52 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -8.42 Total: 9.77 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.40 Total: -0.05 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.90 Total: -53.92 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.18 Total: -22.42 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.41 -10.11 -45.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700543732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.418 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds