Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47054 * 2 1 4 4 N 1.46500 * 109.46539 * 239.99974 * 2 1 3 5 5 C 1.34784 * 119.99678 * 85.00815 * 4 2 1 6 6 O 1.21273 * 120.00060 * 359.97438 * 5 4 2 7 7 C 1.50710 * 119.99522 * 179.97438 * 5 4 2 8 8 C 1.53887 * 113.58305 * 179.97438 * 7 5 4 9 9 C 1.53259 * 86.97745 * 139.52492 * 8 7 5 10 10 C 1.52460 * 128.58090 * 194.93046 * 9 8 7 11 11 C 1.52457 * 128.58122 * 114.98910 * 9 8 7 12 12 C 1.53442 * 87.62746 * 334.99039 * 9 8 7 13 13 C 1.53003 * 109.47058 * 120.00413 * 2 1 3 14 14 C 1.53937 * 113.73139 * 281.86380 * 13 2 1 15 15 N 1.48190 * 86.10030 * 221.95977 * 14 13 2 16 16 C 1.46900 * 111.06842 * 137.52264 * 15 14 13 17 17 C 1.50696 * 109.46967 * 90.56820 * 16 15 14 18 18 O 1.21295 * 120.00477 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00116 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00168 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99986 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99893 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00060 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00029 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46883 * 90.00466 * 24 22 20 26 26 H 1.48502 * 109.47317 * 210.00044 * 24 22 20 27 27 H 1.48499 * 109.47372 * 330.00609 * 24 22 20 28 28 C 1.47957 * 90.80086 * 24.60090 * 15 14 13 29 29 H 1.09008 * 109.46852 * 300.08615 * 1 2 3 30 30 H 1.08996 * 109.47265 * 60.08314 * 1 2 3 31 31 H 1.08993 * 109.47183 * 180.08828 * 1 2 3 32 32 H 0.97002 * 120.00522 * 264.99271 * 4 2 1 33 33 H 1.08995 * 112.82717 * 48.88032 * 7 5 4 34 34 H 1.08995 * 113.64667 * 254.07107 * 8 7 5 35 35 H 1.09005 * 113.64474 * 24.98533 * 8 7 5 36 36 H 1.08995 * 117.51989 * 349.85161 * 10 9 8 37 37 H 1.09006 * 117.51161 * 134.95456 * 10 9 8 38 38 H 1.09003 * 117.51269 * 225.04693 * 11 9 8 39 39 H 1.08999 * 117.51754 * 10.11139 * 11 9 8 40 40 H 1.08998 * 113.56745 * 270.50890 * 12 9 8 41 41 H 1.08998 * 113.78320 * 139.53734 * 12 9 8 42 42 H 1.09000 * 112.93755 * 53.43285 * 13 2 1 43 43 H 1.08999 * 113.76079 * 336.24552 * 14 13 2 44 44 H 1.09006 * 113.75703 * 107.60385 * 14 13 2 45 45 H 1.09001 * 109.46686 * 210.56519 * 16 15 14 46 46 H 1.08995 * 109.47076 * 330.56597 * 16 15 14 47 47 H 0.97001 * 119.99855 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00121 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76342 * 221.08416 * 28 15 14 50 50 H 1.08999 * 113.85975 * 89.72775 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8583 1.1585 -2.4116 7 6 2.6498 -0.7285 -3.5876 8 6 2.7386 0.1773 -4.8284 9 6 4.0613 -0.5277 -5.1482 10 6 5.1527 -0.1039 -6.1247 11 6 4.3998 -1.4202 -6.3369 12 6 4.1833 -0.8398 -3.6508 13 6 2.0400 -0.7214 1.2492 14 6 1.9734 0.1326 2.5283 15 7 3.3110 -0.4204 2.8459 16 6 4.2041 0.6235 3.3662 17 6 4.0866 0.6824 4.8675 18 8 3.3328 -0.0707 5.4470 19 7 4.8192 1.5720 5.5663 20 6 4.7120 1.6261 6.9320 21 1 4.0408 0.9555 7.4479 22 6 5.4669 2.5436 7.6524 23 7 5.3645 2.5950 8.9615 24 14 6.6284 3.7030 6.7601 25 1 5.9060 4.9510 6.4051 26 1 7.7767 4.0299 7.6432 27 1 7.1258 3.0499 5.5226 28 6 3.5701 -0.6731 1.4112 29 1 -0.3633 0.5152 0.8893 30 1 -0.3633 0.5125 -0.8907 31 1 -0.3633 -1.0276 0.0016 32 1 2.2490 -1.6318 -1.1527 33 1 2.1345 -1.6711 -3.7719 34 1 1.9550 -0.0091 -5.5628 35 1 2.8532 1.2349 -4.5903 36 1 4.9293 0.7191 -6.8035 37 1 6.1859 -0.1642 -5.7824 38 1 4.9377 -2.3463 -6.1342 39 1 3.6809 -1.4634 -7.1551 40 1 4.7016 -0.0656 -3.0851 41 1 4.5580 -1.8414 -3.4397 42 1 1.6178 -1.7195 1.3655 43 1 1.9753 1.2062 2.3402 44 1 1.1925 -0.1772 3.2229 45 1 5.2330 0.3916 3.0911 46 1 3.9227 1.5871 2.9416 47 1 5.4218 2.1746 5.1029 48 1 5.8918 3.2353 9.4645 49 1 4.0628 -1.6254 1.2149 50 1 4.0402 0.1633 0.8941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700543732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = -12.003787 kcal Electronic energy + Delta-G solvation = -28479.778861 eV Core-core repulsion = 24508.637698 eV Total energy + Delta-G solvation = -3971.141163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71542 -41.08994 -39.87251 -39.20644 -36.36243 -35.92766 -34.54666 -33.77058 -32.46466 -30.71644 -27.52094 -27.12296 -26.70120 -26.05625 -25.14910 -23.30197 -22.57386 -21.38489 -21.24434 -20.50954 -20.20750 -19.26653 -18.16831 -17.83363 -17.43171 -16.83084 -16.72987 -16.45795 -16.26409 -16.06392 -15.79517 -15.46696 -15.30338 -15.07929 -14.79242 -14.42792 -14.15824 -13.98575 -13.69820 -13.61257 -13.47914 -13.35279 -13.06362 -13.00427 -12.87487 -12.47499 -12.44516 -12.41784 -12.30852 -12.01595 -11.88601 -11.83605 -11.60383 -11.51551 -11.29253 -11.21709 -10.69516 -10.47849 -10.46299 -10.25533 -10.09991 -9.62505 -8.42395 -6.03116 1.28269 1.33664 1.42524 1.65889 1.95179 2.16391 2.21348 2.62277 2.86619 3.13059 3.20075 3.40844 3.42726 3.58518 3.65221 3.69237 3.91919 3.97059 4.05232 4.13965 4.18475 4.22783 4.34445 4.37331 4.42493 4.44650 4.48669 4.51611 4.76754 4.78563 4.79727 4.80920 4.82794 4.84004 4.86936 4.99464 5.02558 5.08062 5.19615 5.27839 5.30922 5.33176 5.37109 5.41203 5.52420 5.57004 5.90300 6.02748 6.58863 6.63595 6.87546 7.32754 7.38956 7.96886 8.75345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002066 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.622868 B =13548.773525 C =14580.815693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.067 0.933 4 N -0.707 5.707 5 C 0.522 3.478 6 O -0.586 6.586 7 C -0.123 4.123 8 C -0.083 4.083 9 C -0.173 4.173 10 C -0.175 4.175 11 C -0.138 4.138 12 C -0.075 4.075 13 C -0.099 4.099 14 C 0.012 3.988 15 N -0.485 5.485 16 C 0.020 3.980 17 C 0.452 3.548 18 O -0.608 6.608 19 N -0.594 5.594 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.232 1.232 28 C 0.016 3.984 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.416 0.584 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.085 0.915 47 H 0.388 0.612 48 H 0.279 0.721 49 H 0.107 0.893 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -7.881 -35.231 36.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.085 0.915 4 N -0.359 5.359 5 C 0.309 3.691 6 O -0.466 6.466 7 C -0.144 4.144 8 C -0.121 4.121 9 C -0.173 4.173 10 C -0.212 4.212 11 C -0.175 4.175 12 C -0.112 4.112 13 C -0.119 4.119 14 C -0.117 4.117 15 N -0.208 5.208 16 C -0.112 4.112 17 C 0.240 3.760 18 O -0.492 6.492 19 N -0.237 5.237 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.156 1.156 28 C -0.112 4.112 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.253 0.747 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.103 0.897 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.125 0.875 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.166 -8.005 -34.170 35.162 hybrid contribution 0.539 1.363 0.210 1.481 sum -1.627 -6.642 -33.961 34.642 Atomic orbital electron populations 1.22094 0.94644 1.02993 1.01897 1.20822 0.94452 0.96142 0.83373 0.91476 1.45935 1.66491 1.14765 1.08678 1.20970 0.76141 0.86699 0.85256 1.90688 1.51948 1.18293 1.85711 1.22670 0.98667 1.01219 0.91821 1.22340 0.95711 0.98417 0.95624 1.22194 0.97509 1.05171 0.92471 1.22886 0.96990 0.99102 1.02231 1.22882 1.02526 0.94718 0.97374 1.22383 0.92485 1.03181 0.93192 1.23128 0.95911 1.00747 0.92088 1.24015 0.93202 0.98265 0.96253 1.68372 1.02457 1.33281 1.16664 1.22441 1.01064 0.96878 0.90819 1.20911 0.82575 0.81939 0.90578 1.90533 1.41782 1.44288 1.72573 1.42076 1.40515 1.34859 1.06224 1.18995 1.24996 1.19756 0.81955 0.92753 1.26114 0.99639 0.99433 0.96260 1.69805 1.42427 1.37689 1.07573 0.85369 0.78067 0.78687 0.79421 1.18239 1.19848 1.15577 1.24042 0.96372 1.03375 0.87457 0.91509 0.93545 0.90810 0.74663 0.84269 0.90508 0.90835 0.88836 0.88264 0.87307 0.87958 0.90544 0.88402 0.86377 0.90849 0.90788 0.86613 0.89731 0.77622 0.91145 0.87523 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.44 71.98 0.68 -1.92 16 2 C 0.16 2.60 2.29 44.99 0.10 2.70 16 3 H 0.07 1.44 7.48 -2.39 -0.02 1.43 16 4 N -0.71 -8.93 4.94 -442.51 -2.19 -11.12 16 5 C 0.52 8.87 7.32 87.66 0.64 9.51 16 6 O -0.59 -15.67 15.55 -3.01 -0.05 -15.71 16 7 C -0.12 -1.34 4.15 -10.94 -0.05 -1.38 16 8 C -0.08 -1.14 7.42 30.98 0.23 -0.91 16 9 C -0.17 -1.85 3.10 -52.31 -0.16 -2.01 16 10 C -0.18 -1.77 10.53 30.46 0.32 -1.45 16 11 C -0.14 -1.06 10.53 30.46 0.32 -0.74 16 12 C -0.07 -0.72 7.65 31.04 0.24 -0.48 16 13 C -0.10 -1.71 3.35 -10.14 -0.03 -1.75 16 14 C 0.01 0.31 7.43 86.37 0.64 0.95 16 15 N -0.49 -14.26 5.65 -911.69 -5.15 -19.41 16 16 C 0.02 0.62 5.28 85.56 0.45 1.08 16 17 C 0.45 21.13 7.83 87.66 0.69 21.82 16 18 O -0.61 -34.88 16.01 -3.08 -0.05 -34.93 16 19 N -0.59 -28.85 5.09 -306.99 -1.56 -30.41 16 20 C -0.33 -19.62 10.16 84.04 0.85 -18.77 16 21 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.93 -57.09 13.96 21.66 0.30 -56.78 16 24 Si 0.96 39.54 27.74 68.60 1.90 41.44 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 28 C 0.02 0.29 7.38 86.41 0.64 0.93 16 29 H 0.07 1.13 8.09 -2.38 -0.02 1.12 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.42 2.75 8.60 -92.71 -0.80 1.96 16 33 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.39 7.42 -2.38 -0.02 1.37 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.95 8.09 -2.39 -0.02 0.94 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.82 7.38 -2.39 -0.02 1.80 16 44 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.12 3.03 8.08 -2.39 -0.02 3.01 16 46 H 0.08 2.25 7.39 -2.39 -0.02 2.24 16 47 H 0.39 15.64 5.76 -92.71 -0.53 15.11 16 48 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.08 1.32 7.88 -2.39 -0.02 1.31 16 Total: -1.00 -84.08 408.60 -1.20 -85.28 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.44 Total: 34.51 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.03 Total: 7.15 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -8.60 Total: -117.73 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.10 Total: -50.64 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.90 Total: 41.44 kcal Total: -84.08 -1.20 -85.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700543732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.275 kcal (2) G-P(sol) polarization free energy of solvation -84.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds