Wall clock time and date at job start Tue Mar 31 2020 18:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47313 * 2 1 4 4 N 1.46503 * 109.47047 * 119.99759 * 2 1 3 5 5 C 1.34776 * 120.00047 * 275.00179 * 4 2 1 6 6 O 1.21272 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99406 * 180.02562 * 5 4 2 8 8 H 1.08990 * 115.56650 * 34.41343 * 7 5 4 9 9 C 1.53126 * 117.50803 * 248.67481 * 7 5 4 10 10 C 1.52468 * 117.50600 * 180.15065 * 7 5 4 11 11 C 1.53251 * 128.58596 * 349.84512 * 10 7 5 12 12 C 1.53896 * 86.88204 * 194.88844 * 11 10 7 13 13 C 1.53256 * 128.58308 * 225.04244 * 10 7 5 14 14 C 1.53000 * 109.47159 * 239.99965 * 2 1 3 15 15 C 1.53509 * 114.17346 * 174.87525 * 14 2 1 16 16 N 1.47476 * 87.93315 * 220.32741 * 15 14 2 17 17 C 1.46904 * 111.00145 * 138.70360 * 16 15 14 18 18 C 1.50692 * 109.47259 * 170.00165 * 17 16 15 19 19 O 1.21292 * 120.00257 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00295 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00374 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00064 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00078 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99890 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47025 * 59.99570 * 25 23 21 27 27 H 1.48498 * 109.47500 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47050 * 299.99857 * 25 23 21 29 29 C 1.47483 * 87.83749 * 27.00978 * 16 15 14 30 30 H 1.09004 * 109.47015 * 304.94530 * 1 2 3 31 31 H 1.09005 * 109.47313 * 64.93860 * 1 2 3 32 32 H 1.08994 * 109.47365 * 184.94003 * 1 2 3 33 33 H 0.97003 * 119.99486 * 94.99572 * 4 2 1 34 34 H 1.09003 * 117.51322 * 0.02562 * 9 7 5 35 35 H 1.08996 * 117.51565 * 145.10828 * 9 7 5 36 36 H 1.08995 * 113.64453 * 309.38029 * 11 10 7 37 37 H 1.09002 * 113.64987 * 80.39365 * 11 10 7 38 38 H 1.08998 * 113.58780 * 270.39010 * 12 11 10 39 39 H 1.08997 * 113.65841 * 139.58126 * 12 11 10 40 40 H 1.09003 * 113.64557 * 279.61101 * 13 10 7 41 41 H 1.08993 * 113.64677 * 50.61052 * 13 10 7 42 42 H 1.09009 * 113.38071 * 307.95144 * 14 2 1 43 43 H 1.09001 * 113.47511 * 105.55876 * 15 14 2 44 44 H 1.09003 * 113.47403 * 335.09463 * 15 14 2 45 45 H 1.09004 * 109.46719 * 290.00091 * 17 16 15 46 46 H 1.08998 * 109.47116 * 49.99788 * 17 16 15 47 47 H 0.97008 * 119.99675 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99803 * 180.02562 * 24 23 21 49 49 H 1.08995 * 113.47547 * 87.75630 * 29 16 15 50 50 H 1.08996 * 113.47548 * 218.22232 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1586 2.4115 7 6 2.6498 -0.7285 3.5874 8 1 3.3954 -1.5038 3.4112 9 6 1.6571 -0.9491 4.7322 10 6 2.7701 0.0856 4.8709 11 6 2.6485 1.6021 5.0558 12 6 3.2872 1.3997 6.4413 13 6 3.9251 0.1177 5.8777 14 6 2.0400 -0.7213 -1.2492 15 6 3.5646 -0.6768 -1.4224 16 7 3.3411 -0.4650 -2.8646 17 6 4.2687 0.5410 -3.3990 18 6 4.1828 0.5547 -4.9034 19 8 3.4231 -0.1991 -5.4744 20 7 4.9492 1.4052 -5.6146 21 6 4.8706 1.4180 -6.9832 22 1 4.1948 0.7462 -7.4916 23 6 5.6604 2.2952 -7.7163 24 7 6.4824 3.1130 -7.0976 25 14 5.5539 2.3122 -9.5812 26 1 4.1674 2.6465 -9.9947 27 1 6.4902 3.3304 -10.1213 28 1 5.9189 0.9734 -10.1100 29 6 2.0436 0.1441 -2.5172 30 1 -0.3633 0.5887 0.8424 31 1 -0.3634 0.4353 -0.9309 32 1 -0.3634 -1.0238 0.0885 33 1 2.2489 -1.6318 1.1526 34 1 0.6404 -0.5807 4.5951 35 1 1.7502 -1.8690 5.3093 36 1 3.2687 2.1773 4.3684 37 1 1.6185 1.9564 5.0968 38 1 2.5615 1.2142 7.2332 39 1 4.0133 2.1687 6.7047 40 1 3.9184 -0.7180 6.5775 41 1 4.9004 0.2797 5.4191 42 1 1.6040 -1.7110 -1.3856 43 1 4.0554 -1.6227 -1.1933 44 1 4.0333 0.1731 -0.9262 45 1 4.0016 1.5239 -3.0109 46 1 5.2862 0.2947 -3.0954 47 1 5.5559 2.0088 -5.1579 48 1 7.0334 3.7256 -7.6094 49 1 2.1065 1.2130 -2.3133 50 1 1.2455 -0.1061 -3.2161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700547156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:36 Heat of formation + Delta-G solvation = 11.614566 kcal Electronic energy + Delta-G solvation = -28398.383171 eV Core-core repulsion = 24428.266177 eV Total energy + Delta-G solvation = -3970.116994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85852 -40.20448 -38.67285 -37.72916 -35.40590 -34.02874 -33.85248 -31.57303 -31.13202 -29.50732 -26.08826 -25.97735 -25.74296 -24.83491 -23.85538 -23.40156 -21.60556 -20.58826 -19.71153 -19.20333 -18.64560 -17.85880 -17.35733 -16.63524 -16.03012 -15.56859 -15.53167 -15.43442 -15.29797 -14.90549 -14.62008 -14.39433 -14.10086 -13.71300 -13.50722 -13.13305 -12.92996 -12.78523 -12.59404 -12.51415 -12.37784 -12.32444 -11.98138 -11.86590 -11.78653 -11.55603 -11.29550 -11.05117 -10.94339 -10.83817 -10.67739 -10.46241 -10.44062 -10.41879 -10.18204 -10.14822 -9.82247 -9.46294 -9.29056 -8.76361 -8.17254 -7.93037 -6.38608 -3.79377 2.28679 2.83163 3.22006 3.27240 3.31785 3.39224 3.92935 3.96900 4.01457 4.24211 4.24977 4.32238 4.40136 4.43792 4.55238 4.58165 4.77302 4.97506 5.02962 5.05237 5.13378 5.19856 5.21129 5.26786 5.27544 5.37187 5.40934 5.46123 5.48847 5.54785 5.55435 5.56611 5.66769 5.69309 5.73663 5.78250 5.82564 5.95661 5.97428 6.00629 6.09554 6.20176 6.29776 6.32388 6.55764 7.19463 7.31367 7.57685 8.05621 8.08946 8.65513 9.21411 9.57940 10.10569 10.79251 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.001856 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.273579 B =15085.921439 C =15818.460037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.088 0.912 4 N -0.720 5.720 5 C 0.544 3.456 6 O -0.535 6.535 7 C -0.181 4.181 8 H 0.122 0.878 9 C -0.122 4.122 10 C -0.126 4.126 11 C -0.082 4.082 12 C -0.143 4.143 13 C -0.099 4.099 14 C -0.127 4.127 15 C 0.002 3.998 16 N -0.439 5.439 17 C 0.008 3.992 18 C 0.447 3.553 19 O -0.575 6.575 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.069 0.931 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 -6.878 27.659 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.106 0.894 4 N -0.371 5.371 5 C 0.330 3.670 6 O -0.411 6.411 7 C -0.202 4.202 8 H 0.140 0.860 9 C -0.159 4.159 10 C -0.127 4.127 11 C -0.119 4.119 12 C -0.180 4.180 13 C -0.136 4.136 14 C -0.147 4.147 15 C -0.128 4.128 16 N -0.161 5.161 17 C -0.124 4.124 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.113 4.113 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.694 -6.917 26.696 28.630 hybrid contribution 0.677 0.613 -0.369 0.985 sum -7.017 -6.304 26.327 27.965 Atomic orbital electron populations 1.22133 0.94943 1.02178 1.02665 1.20972 0.94266 0.97031 0.82817 0.89403 1.46002 1.67543 1.14069 1.09468 1.19624 0.77118 0.86733 0.83520 1.90698 1.49879 1.15755 1.84801 1.22175 1.04668 1.04286 0.89041 0.85967 1.22804 0.94884 0.99869 0.98361 1.22327 0.99412 0.95341 0.95626 1.22322 1.01610 0.92343 0.95638 1.22819 1.00208 0.97702 0.97311 1.22512 0.96473 0.98362 0.96289 1.23076 0.96698 1.00947 0.93933 1.23846 0.95700 1.02164 0.91055 1.68814 1.02188 1.33263 1.11830 1.22508 0.98350 0.94823 0.96681 1.19663 0.84965 0.84486 0.87696 1.90518 1.41232 1.42771 1.71338 1.41872 1.37221 1.34265 1.07094 1.19645 1.22274 1.19645 0.81219 0.88019 1.25258 0.96089 0.96012 1.00675 1.69609 1.25321 1.22887 1.36677 0.85916 0.78117 0.77975 0.82190 1.19942 1.20997 1.19913 1.23820 0.95412 0.97079 0.94976 0.92267 0.91206 0.92375 0.76549 0.88105 0.87650 0.89354 0.91309 0.90194 0.91188 0.91264 0.89528 0.87435 0.89819 0.91534 0.92274 0.89468 0.77562 0.91872 0.91300 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.47 37.16 0.35 -1.14 16 2 C 0.15 1.50 2.34 -67.93 -0.16 1.35 16 3 H 0.09 1.05 7.43 -51.93 -0.39 0.66 16 4 N -0.72 -6.04 4.96 -53.81 -0.27 -6.30 16 5 C 0.54 5.49 7.58 -10.99 -0.08 5.41 16 6 O -0.53 -7.32 14.80 5.56 0.08 -7.24 16 7 C -0.18 -1.36 6.19 -91.98 -0.57 -1.93 16 8 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 9 C -0.12 -0.79 10.24 -26.87 -0.28 -1.07 16 10 C -0.13 -0.98 2.88 -154.73 -0.45 -1.43 16 11 C -0.08 -0.72 6.47 -26.13 -0.17 -0.89 16 12 C -0.14 -0.94 8.08 -25.81 -0.21 -1.14 16 13 C -0.10 -0.63 8.10 -26.14 -0.21 -0.84 16 14 C -0.13 -1.34 3.49 -90.09 -0.31 -1.65 16 15 C 0.00 0.02 7.14 -7.55 -0.05 -0.03 16 16 N -0.44 -7.30 5.82 -246.08 -1.43 -8.73 16 17 C 0.01 0.15 5.30 -4.98 -0.03 0.13 16 18 C 0.45 10.90 7.85 -10.99 -0.09 10.82 16 19 O -0.58 -16.17 16.01 5.55 0.09 -16.08 16 20 N -0.57 -14.75 5.29 -10.97 -0.06 -14.81 16 21 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 25 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.02 0.24 7.26 -7.54 -0.05 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.40 2.43 8.60 -40.82 -0.35 2.07 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 1.06 8.14 -51.92 -0.42 0.64 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 45 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 46 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 47 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.07 0.94 7.28 -51.93 -0.38 0.56 16 50 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -34.07 410.32 -10.74 -44.81 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.49 Total: 10.45 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.55 Total: -0.39 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -1.03 Total: -54.09 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.07 -10.74 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700547156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.423 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds