Wall clock time and date at job start Tue Mar 31 2020 18:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47313 * 2 1 4 4 N 1.46503 * 109.47047 * 119.99759 * 2 1 3 5 5 C 1.34776 * 120.00047 * 275.00179 * 4 2 1 6 6 O 1.21272 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99406 * 180.02562 * 5 4 2 8 8 H 1.08990 * 115.56650 * 34.41343 * 7 5 4 9 9 C 1.53126 * 117.50803 * 248.67481 * 7 5 4 10 10 C 1.52468 * 117.50600 * 180.15065 * 7 5 4 11 11 C 1.53251 * 128.58596 * 349.84512 * 10 7 5 12 12 C 1.53896 * 86.88204 * 194.88844 * 11 10 7 13 13 C 1.53256 * 128.58308 * 225.04244 * 10 7 5 14 14 C 1.53000 * 109.47159 * 239.99965 * 2 1 3 15 15 C 1.53509 * 114.17346 * 174.87525 * 14 2 1 16 16 N 1.47476 * 87.93315 * 220.32741 * 15 14 2 17 17 C 1.46904 * 111.00145 * 138.70360 * 16 15 14 18 18 C 1.50692 * 109.47259 * 170.00165 * 17 16 15 19 19 O 1.21292 * 120.00257 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00295 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00374 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00064 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00078 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99890 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47025 * 59.99570 * 25 23 21 27 27 H 1.48498 * 109.47500 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47050 * 299.99857 * 25 23 21 29 29 C 1.47483 * 87.83749 * 27.00978 * 16 15 14 30 30 H 1.09004 * 109.47015 * 304.94530 * 1 2 3 31 31 H 1.09005 * 109.47313 * 64.93860 * 1 2 3 32 32 H 1.08994 * 109.47365 * 184.94003 * 1 2 3 33 33 H 0.97003 * 119.99486 * 94.99572 * 4 2 1 34 34 H 1.09003 * 117.51322 * 0.02562 * 9 7 5 35 35 H 1.08996 * 117.51565 * 145.10828 * 9 7 5 36 36 H 1.08995 * 113.64453 * 309.38029 * 11 10 7 37 37 H 1.09002 * 113.64987 * 80.39365 * 11 10 7 38 38 H 1.08998 * 113.58780 * 270.39010 * 12 11 10 39 39 H 1.08997 * 113.65841 * 139.58126 * 12 11 10 40 40 H 1.09003 * 113.64557 * 279.61101 * 13 10 7 41 41 H 1.08993 * 113.64677 * 50.61052 * 13 10 7 42 42 H 1.09009 * 113.38071 * 307.95144 * 14 2 1 43 43 H 1.09001 * 113.47511 * 105.55876 * 15 14 2 44 44 H 1.09003 * 113.47403 * 335.09463 * 15 14 2 45 45 H 1.09004 * 109.46719 * 290.00091 * 17 16 15 46 46 H 1.08998 * 109.47116 * 49.99788 * 17 16 15 47 47 H 0.97008 * 119.99675 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99803 * 180.02562 * 24 23 21 49 49 H 1.08995 * 113.47547 * 87.75630 * 29 16 15 50 50 H 1.08996 * 113.47548 * 218.22232 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1586 2.4115 7 6 2.6498 -0.7285 3.5874 8 1 3.3954 -1.5038 3.4112 9 6 1.6571 -0.9491 4.7322 10 6 2.7701 0.0856 4.8709 11 6 2.6485 1.6021 5.0558 12 6 3.2872 1.3997 6.4413 13 6 3.9251 0.1177 5.8777 14 6 2.0400 -0.7213 -1.2492 15 6 3.5646 -0.6768 -1.4224 16 7 3.3411 -0.4650 -2.8646 17 6 4.2687 0.5410 -3.3990 18 6 4.1828 0.5547 -4.9034 19 8 3.4231 -0.1991 -5.4744 20 7 4.9492 1.4052 -5.6146 21 6 4.8706 1.4180 -6.9832 22 1 4.1948 0.7462 -7.4916 23 6 5.6604 2.2952 -7.7163 24 7 6.4824 3.1130 -7.0976 25 14 5.5539 2.3122 -9.5812 26 1 4.1674 2.6465 -9.9947 27 1 6.4902 3.3304 -10.1213 28 1 5.9189 0.9734 -10.1100 29 6 2.0436 0.1441 -2.5172 30 1 -0.3633 0.5887 0.8424 31 1 -0.3634 0.4353 -0.9309 32 1 -0.3634 -1.0238 0.0885 33 1 2.2489 -1.6318 1.1526 34 1 0.6404 -0.5807 4.5951 35 1 1.7502 -1.8690 5.3093 36 1 3.2687 2.1773 4.3684 37 1 1.6185 1.9564 5.0968 38 1 2.5615 1.2142 7.2332 39 1 4.0133 2.1687 6.7047 40 1 3.9184 -0.7180 6.5775 41 1 4.9004 0.2797 5.4191 42 1 1.6040 -1.7110 -1.3856 43 1 4.0554 -1.6227 -1.1933 44 1 4.0333 0.1731 -0.9262 45 1 4.0016 1.5239 -3.0109 46 1 5.2862 0.2947 -3.0954 47 1 5.5559 2.0088 -5.1579 48 1 7.0334 3.7256 -7.6094 49 1 2.1065 1.2130 -2.3133 50 1 1.2455 -0.1061 -3.2161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700547156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:35 Heat of formation + Delta-G solvation = -13.008239 kcal Electronic energy + Delta-G solvation = -28399.450896 eV Core-core repulsion = 24428.266177 eV Total energy + Delta-G solvation = -3971.184719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77493 -41.10607 -39.79853 -39.22980 -36.35871 -35.90167 -34.61852 -33.33015 -32.44505 -30.70154 -27.50212 -26.96700 -26.56590 -25.94061 -25.08158 -23.92727 -22.60034 -21.39560 -21.01982 -20.60141 -19.91507 -19.25816 -18.11201 -17.84728 -17.42179 -16.75602 -16.57952 -16.37908 -16.10912 -16.06160 -15.94225 -15.63312 -15.44350 -15.11125 -14.78099 -14.23196 -14.09615 -13.72349 -13.68378 -13.51865 -13.46111 -13.19925 -13.02914 -12.96410 -12.88410 -12.47411 -12.44561 -12.41158 -12.30754 -12.15487 -11.96800 -11.88116 -11.52970 -11.48180 -11.25395 -11.00377 -10.77526 -10.54321 -10.41210 -10.10081 -10.03161 -9.72456 -8.47955 -5.97167 1.38525 1.39914 1.51356 1.55430 2.03299 2.10204 2.27415 2.79398 2.81433 3.17535 3.30350 3.37841 3.50161 3.66767 3.70916 3.83375 3.90873 3.98373 4.06379 4.13079 4.14727 4.20819 4.32009 4.37501 4.44693 4.48147 4.51315 4.52406 4.67697 4.74090 4.77842 4.80198 4.83061 4.86855 4.90968 4.96041 5.07308 5.10054 5.16621 5.17270 5.30366 5.36035 5.39210 5.41672 5.52483 5.55181 5.88192 6.06619 6.58754 6.63627 7.11061 7.33476 7.54215 8.10563 8.69326 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.001856 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.273579 B =15085.921439 C =15818.460037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.065 0.935 4 N -0.707 5.707 5 C 0.538 3.462 6 O -0.578 6.578 7 C -0.182 4.182 8 H 0.148 0.852 9 C -0.107 4.107 10 C -0.142 4.142 11 C -0.093 4.093 12 C -0.136 4.136 13 C -0.090 4.090 14 C -0.098 4.098 15 C 0.009 3.991 16 N -0.473 5.473 17 C 0.022 3.978 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.008 3.992 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.070 0.930 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -8.397 29.193 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.084 0.916 4 N -0.359 5.359 5 C 0.326 3.674 6 O -0.458 6.458 7 C -0.203 4.203 8 H 0.165 0.835 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.131 4.131 12 C -0.174 4.174 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.119 4.119 16 N -0.195 5.195 17 C -0.110 4.110 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.122 4.122 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.141 0.859 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.165 -8.457 28.256 30.352 hybrid contribution 0.471 1.109 -0.833 1.464 sum -6.694 -7.349 27.423 29.169 Atomic orbital electron populations 1.22082 0.94400 1.02924 1.02041 1.20742 0.94568 0.95936 0.83078 0.91638 1.45859 1.66800 1.14665 1.08539 1.20137 0.76415 0.86334 0.84485 1.90689 1.51798 1.17767 1.85504 1.22236 1.05712 1.04578 0.87785 0.83462 1.22890 0.93858 1.00245 0.97439 1.22475 1.00845 0.94537 0.96400 1.22281 1.00332 0.93458 0.97019 1.22814 1.00265 0.98188 0.96102 1.22474 0.95747 0.98574 0.95904 1.22881 0.95815 1.00693 0.92304 1.23898 0.96792 1.03235 0.88023 1.68779 1.02800 1.33049 1.14848 1.22373 1.00147 0.96587 0.91893 1.20753 0.83239 0.82792 0.90282 1.90478 1.42659 1.44154 1.73029 1.41959 1.37847 1.34928 1.06638 1.19630 1.23376 1.20707 0.82706 0.90371 1.26074 0.95178 0.95061 1.05103 1.69674 1.25311 1.22890 1.38348 0.84969 0.78357 0.78296 0.76588 1.19709 1.19378 1.19634 1.23880 0.94046 0.97819 0.96425 0.93595 0.91315 0.90745 0.74747 0.89160 0.84882 0.91621 0.93053 0.89244 0.90830 0.89419 0.89572 0.85922 0.87994 0.90956 0.90553 0.87564 0.77104 0.91279 0.91179 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.47 71.98 0.68 -2.06 16 2 C 0.16 2.98 2.34 44.99 0.11 3.08 16 3 H 0.07 1.55 7.43 -2.39 -0.02 1.54 16 4 N -0.71 -10.49 4.96 -442.55 -2.19 -12.68 16 5 C 0.54 10.33 7.58 87.66 0.66 10.99 16 6 O -0.58 -16.14 14.80 -3.01 -0.04 -16.19 16 7 C -0.18 -2.36 6.19 -11.67 -0.07 -2.43 16 8 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 9 C -0.11 -1.14 10.24 30.50 0.31 -0.83 16 10 C -0.14 -2.00 2.88 -52.32 -0.15 -2.15 16 11 C -0.09 -1.69 6.47 30.98 0.20 -1.48 16 12 C -0.14 -1.64 8.08 31.19 0.25 -1.39 16 13 C -0.09 -0.94 8.10 30.98 0.25 -0.69 16 14 C -0.10 -1.88 3.49 -10.45 -0.04 -1.92 16 15 C 0.01 0.20 7.14 83.58 0.60 0.79 16 16 N -0.47 -15.28 5.82 -932.47 -5.43 -20.71 16 17 C 0.02 0.78 5.30 85.55 0.45 1.24 16 18 C 0.44 21.97 7.85 87.65 0.69 22.66 16 19 O -0.62 -35.71 16.01 -3.07 -0.05 -35.76 16 20 N -0.58 -30.61 5.29 -306.99 -1.62 -32.23 16 21 C -0.33 -19.52 9.68 84.04 0.81 -18.71 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 25 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 C 0.01 0.22 7.26 83.58 0.61 0.83 16 30 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.42 3.72 8.60 -92.71 -0.80 2.92 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 1.44 8.05 -2.39 -0.02 1.42 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.53 7.87 -2.39 -0.02 1.51 16 45 H 0.08 2.47 7.30 -2.38 -0.02 2.46 16 46 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 47 H 0.40 19.94 7.90 -92.70 -0.73 19.21 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.07 1.91 7.28 -2.39 -0.02 1.90 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -76.21 410.32 -1.78 -77.99 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.58 Total: 36.66 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.83 Total: 7.60 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -8.96 Total: -116.06 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.09 Total: -51.95 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.21 -1.78 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700547156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.981 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds