Wall clock time and date at job start Tue Mar 31 2020 19:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47078 * 2 1 4 4 C 1.52997 * 109.47098 * 239.99059 * 2 1 3 5 5 C 1.53009 * 109.46714 * 175.00220 * 4 2 1 6 6 N 1.46501 * 109.46594 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99468 * 179.97438 * 6 5 4 8 8 O 1.21642 * 120.00577 * 354.86574 * 7 6 5 9 9 C 1.47083 * 119.99785 * 174.86364 * 7 6 5 10 10 C 1.39343 * 120.58649 * 185.79818 * 9 7 6 11 11 C 1.39476 * 118.95614 * 179.97438 * 10 9 7 12 12 C 1.35753 * 120.13043 * 359.97438 * 11 10 9 13 13 N 1.35426 * 121.23651 * 0.02562 * 12 11 10 14 14 C 1.46498 * 119.47595 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47230 * 0.02562 * 14 13 12 16 16 C 1.53004 * 109.47176 * 120.00408 * 14 13 12 17 17 C 1.52996 * 109.47596 * 240.00678 * 14 13 12 18 18 C 1.34654 * 121.05601 * 359.74151 * 13 12 11 19 19 O 1.21889 * 120.10486 * 180.28195 * 18 13 12 20 20 N 1.46509 * 109.46748 * 119.99471 * 2 1 3 21 21 C 1.36937 * 119.99520 * 275.00098 * 20 2 1 22 22 H 1.08001 * 120.00729 * 359.97438 * 21 20 2 23 23 C 1.38816 * 119.99816 * 180.02562 * 21 20 2 24 24 N 1.31617 * 119.99735 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00122 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47502 * 89.99634 * 25 23 21 27 27 H 1.48505 * 109.47111 * 209.99565 * 25 23 21 28 28 H 1.48503 * 109.46811 * 329.98956 * 25 23 21 29 29 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47529 * 300.00731 * 1 2 3 31 31 H 1.09000 * 109.47096 * 60.00992 * 1 2 3 32 32 H 1.08998 * 109.47068 * 55.00764 * 4 2 1 33 33 H 1.09000 * 109.47148 * 294.99866 * 4 2 1 34 34 H 1.08998 * 109.46909 * 60.00447 * 5 4 2 35 35 H 1.09000 * 109.47024 * 299.99722 * 5 4 2 36 36 H 0.96996 * 120.00460 * 0.02562 * 6 5 4 37 37 H 1.07994 * 120.51848 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.92825 * 180.02562 * 11 10 9 39 39 H 1.08003 * 119.38016 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.46882 * 59.99162 * 15 14 13 41 41 H 1.08996 * 109.47886 * 179.97438 * 15 14 13 42 42 H 1.09007 * 109.47097 * 300.00525 * 15 14 13 43 43 H 1.08994 * 109.46572 * 60.00415 * 16 14 13 44 44 H 1.09002 * 109.46805 * 180.02562 * 16 14 13 45 45 H 1.08997 * 109.46537 * 300.00408 * 16 14 13 46 46 H 1.09006 * 109.47320 * 59.99541 * 17 14 13 47 47 H 1.09003 * 109.47543 * 179.97438 * 17 14 13 48 48 H 1.09003 * 109.47348 * 300.00047 * 17 14 13 49 49 H 0.96988 * 120.00203 * 95.00045 * 20 2 1 50 50 H 0.97002 * 119.99932 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3134 6 7 4.0532 -1.3038 -2.5098 7 6 5.3740 -1.3390 -2.7755 8 8 6.1522 -0.7201 -2.0748 9 6 5.8746 -2.1261 -3.9127 10 6 7.2439 -2.2695 -4.1277 11 6 7.6811 -3.0238 -5.2164 12 6 6.7798 -3.6060 -6.0481 13 7 5.4476 -3.4709 -5.8453 14 6 4.5091 -4.1162 -6.7666 15 6 5.2899 -4.8659 -7.8479 16 6 3.6331 -5.1040 -5.9933 17 6 3.6240 -3.0533 -7.4206 18 6 4.9719 -2.7575 -4.8070 19 8 3.7694 -2.6515 -4.6380 20 7 2.0183 -0.6906 1.1963 21 6 2.1490 -0.0072 2.3758 22 1 1.8925 1.0408 2.4241 23 6 2.6121 -0.6613 3.5092 24 7 2.9251 -1.9384 3.4503 25 14 2.7897 0.2705 5.1184 26 1 1.5221 0.1785 5.8863 27 1 3.8947 -0.3220 5.9142 28 1 3.0939 1.6960 4.8339 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6055 -0.2620 -2.1369 33 1 1.7517 -1.7717 -1.2053 34 1 3.9994 -1.0729 -0.4257 35 1 3.8533 0.4368 -1.3573 36 1 3.4259 -1.7347 -3.1111 37 1 7.9553 -1.8040 -3.4618 38 1 8.7388 -3.1456 -5.3976 39 1 7.1317 -4.1878 -6.8872 40 1 5.9204 -5.6232 -7.3817 41 1 4.5918 -5.3465 -8.5332 42 1 5.9144 -4.1625 -8.3988 43 1 3.0768 -4.5701 -5.2229 44 1 2.9351 -5.5844 -6.6790 45 1 4.2637 -5.8612 -5.5275 46 1 4.2481 -2.3496 -7.9715 47 1 2.9260 -3.5335 -8.1065 48 1 3.0677 -2.5195 -6.6501 49 1 2.2489 -1.6316 1.1529 50 1 3.2484 -2.3956 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713417943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:28 Heat of formation + Delta-G solvation = -26.936096 kcal Electronic energy + Delta-G solvation = -29498.727810 eV Core-core repulsion = 25526.939133 eV Total energy + Delta-G solvation = -3971.788676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16296 -39.22620 -37.48791 -36.87049 -36.28975 -34.00004 -32.49006 -32.07273 -30.54121 -29.16647 -28.37482 -27.79858 -27.76594 -24.97376 -23.93367 -23.56514 -22.31822 -21.11903 -20.26429 -19.56885 -18.03079 -17.45516 -17.24220 -16.97569 -16.24433 -16.07781 -15.27680 -15.10493 -14.75629 -14.71080 -14.41512 -14.26147 -13.98101 -13.76670 -13.35123 -13.15798 -13.03119 -12.81568 -12.65547 -12.53451 -12.51433 -12.39528 -12.26963 -11.97445 -11.87175 -11.66101 -11.62029 -11.39338 -10.89757 -10.80319 -10.61710 -10.49741 -10.28654 -10.16128 -9.98004 -9.88281 -9.56401 -9.50508 -8.80123 -8.52196 -8.24050 -6.83138 -5.64328 -2.92305 0.20802 1.52060 2.08968 2.81308 3.52224 3.57169 3.59153 3.63152 3.77135 3.92488 4.06405 4.24341 4.35607 4.51237 4.63270 4.70407 4.81261 4.89852 4.96465 4.98327 5.20063 5.22472 5.24737 5.37541 5.40382 5.52847 5.59823 5.61550 5.69847 5.73306 5.82750 5.85237 5.89519 5.96533 6.05111 6.15205 6.27537 6.34128 6.52294 6.57129 6.66186 6.68808 6.87844 7.00432 7.04668 7.20110 7.62254 7.82044 8.13176 8.54246 8.73035 9.65301 10.23586 10.58579 11.58557 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002514 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.616441 B =11135.779435 C =11946.700466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.130 4.130 5 C 0.121 3.879 6 N -0.714 5.714 7 C 0.569 3.431 8 O -0.551 6.551 9 C -0.268 4.268 10 C 0.053 3.947 11 C -0.239 4.239 12 C 0.146 3.854 13 N -0.481 5.481 14 C 0.144 3.856 15 C -0.165 4.165 16 C -0.166 4.166 17 C -0.164 4.164 18 C 0.533 3.467 19 O -0.537 6.537 20 N -0.723 5.723 21 C -0.234 4.234 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.411 0.589 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.369 -8.078 -30.206 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.169 4.169 5 C -0.002 4.002 6 N -0.374 5.374 7 C 0.355 3.645 8 O -0.431 6.431 9 C -0.275 4.275 10 C 0.030 3.970 11 C -0.262 4.262 12 C 0.016 3.984 13 N -0.190 5.190 14 C 0.062 3.938 15 C -0.222 4.222 16 C -0.223 4.223 17 C -0.222 4.222 18 C 0.336 3.664 19 O -0.419 6.419 20 N -0.365 5.365 21 C -0.365 4.365 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.256 0.744 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.035 -7.496 -29.503 31.243 hybrid contribution 0.078 -0.160 0.641 0.665 sum 7.112 -7.656 -28.862 30.696 Atomic orbital electron populations 1.22417 0.99226 1.00792 0.99845 1.20164 0.91784 0.95561 0.86102 0.93328 1.22020 0.94124 1.01693 0.99025 1.21414 0.94311 0.97152 0.87312 1.46609 1.07482 1.55935 1.27361 1.17402 0.83058 0.80785 0.83254 1.90799 1.56486 1.45169 1.50666 1.21196 0.94162 1.10178 1.01944 1.22062 0.94860 0.87549 0.92554 1.20698 1.00484 1.06341 0.98646 1.22311 0.82638 0.94932 0.98487 1.45693 1.06553 1.42055 1.24683 1.21069 0.89688 0.93954 0.89090 1.22317 1.01294 1.00521 0.98057 1.22260 0.99977 0.98256 1.01842 1.22240 0.99858 0.98325 1.01750 1.16963 0.89191 0.79638 0.80641 1.90563 1.15244 1.63097 1.73017 1.42461 1.78047 1.10676 1.05333 1.19241 1.36102 0.93821 0.87352 0.91233 1.24721 1.02379 0.95986 0.98007 1.69664 1.51181 1.08678 1.28697 0.86213 0.77142 0.78872 0.84135 1.21921 1.21881 1.20799 0.93554 0.92808 0.94588 0.92034 0.91724 0.90028 0.92066 0.74380 0.83242 0.82953 0.81303 0.91179 0.89740 0.91229 0.89154 0.90735 0.92258 0.92361 0.90728 0.89288 0.78288 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.49 37.16 0.35 -2.75 16 2 C 0.17 3.67 2.89 -67.93 -0.20 3.47 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 C -0.13 -2.37 4.87 -26.73 -0.13 -2.50 16 5 C 0.12 2.40 5.57 -4.04 -0.02 2.38 16 6 N -0.71 -12.90 5.47 -61.49 -0.34 -13.24 16 7 C 0.57 10.43 7.73 -12.67 -0.10 10.34 16 8 O -0.55 -11.88 16.41 5.24 0.09 -11.80 16 9 C -0.27 -3.74 5.92 -104.50 -0.62 -4.36 16 10 C 0.05 0.56 9.70 -38.71 -0.38 0.18 16 11 C -0.24 -1.53 9.99 -40.01 -0.40 -1.93 16 12 C 0.15 0.82 9.58 -16.86 -0.16 0.65 16 13 N -0.48 -3.99 2.53 -105.39 -0.27 -4.26 16 14 C 0.14 0.92 1.02 -131.82 -0.13 0.79 16 15 C -0.16 -0.47 7.09 37.16 0.26 -0.20 16 16 C -0.17 -1.22 8.39 37.16 0.31 -0.91 16 17 C -0.16 -1.13 8.40 37.16 0.31 -0.82 16 18 C 0.53 6.63 6.84 -14.92 -0.10 6.52 16 19 O -0.54 -7.59 9.83 5.02 0.05 -7.54 16 20 N -0.72 -18.89 4.57 -53.42 -0.24 -19.13 16 21 C -0.23 -6.75 9.93 -15.06 -0.15 -6.89 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 25 Si 0.90 23.39 29.55 -169.99 -5.02 18.36 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.91 7.75 -51.93 -0.40 1.51 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.41 6.94 5.07 -40.82 -0.21 6.73 16 37 H 0.15 1.56 7.70 -52.49 -0.40 1.16 16 38 H 0.15 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.17 0.28 5.55 -52.48 -0.29 -0.01 16 40 H 0.07 0.14 7.41 -51.93 -0.38 -0.24 16 41 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.13 7.41 -51.93 -0.38 -0.26 16 43 H 0.09 0.94 6.09 -51.93 -0.32 0.62 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.87 6.14 -51.93 -0.32 0.55 16 49 H 0.38 10.69 7.80 -40.82 -0.32 10.37 16 50 H 0.25 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -36.35 398.40 -8.32 -44.66 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.07 Total: 12.12 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.24 Total: 3.42 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.12 Total: -65.23 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.14 Total: -19.34 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.35 -8.32 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713417943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.727 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds