Wall clock time and date at job start Tue Mar 31 2020 19:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47078 * 2 1 4 4 C 1.52997 * 109.47098 * 239.99059 * 2 1 3 5 5 C 1.53009 * 109.46714 * 175.00220 * 4 2 1 6 6 N 1.46501 * 109.46594 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99468 * 179.97438 * 6 5 4 8 8 O 1.21642 * 120.00577 * 354.86574 * 7 6 5 9 9 C 1.47083 * 119.99785 * 174.86364 * 7 6 5 10 10 C 1.39343 * 120.58649 * 185.79818 * 9 7 6 11 11 C 1.39476 * 118.95614 * 179.97438 * 10 9 7 12 12 C 1.35753 * 120.13043 * 359.97438 * 11 10 9 13 13 N 1.35426 * 121.23651 * 0.02562 * 12 11 10 14 14 C 1.46498 * 119.47595 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47230 * 0.02562 * 14 13 12 16 16 C 1.53004 * 109.47176 * 120.00408 * 14 13 12 17 17 C 1.52996 * 109.47596 * 240.00678 * 14 13 12 18 18 C 1.34654 * 121.05601 * 359.74151 * 13 12 11 19 19 O 1.21889 * 120.10486 * 180.28195 * 18 13 12 20 20 N 1.46509 * 109.46748 * 119.99471 * 2 1 3 21 21 C 1.36937 * 119.99520 * 275.00098 * 20 2 1 22 22 H 1.08001 * 120.00729 * 359.97438 * 21 20 2 23 23 C 1.38816 * 119.99816 * 180.02562 * 21 20 2 24 24 N 1.31617 * 119.99735 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00122 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47502 * 89.99634 * 25 23 21 27 27 H 1.48505 * 109.47111 * 209.99565 * 25 23 21 28 28 H 1.48503 * 109.46811 * 329.98956 * 25 23 21 29 29 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47529 * 300.00731 * 1 2 3 31 31 H 1.09000 * 109.47096 * 60.00992 * 1 2 3 32 32 H 1.08998 * 109.47068 * 55.00764 * 4 2 1 33 33 H 1.09000 * 109.47148 * 294.99866 * 4 2 1 34 34 H 1.08998 * 109.46909 * 60.00447 * 5 4 2 35 35 H 1.09000 * 109.47024 * 299.99722 * 5 4 2 36 36 H 0.96996 * 120.00460 * 0.02562 * 6 5 4 37 37 H 1.07994 * 120.51848 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.92825 * 180.02562 * 11 10 9 39 39 H 1.08003 * 119.38016 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.46882 * 59.99162 * 15 14 13 41 41 H 1.08996 * 109.47886 * 179.97438 * 15 14 13 42 42 H 1.09007 * 109.47097 * 300.00525 * 15 14 13 43 43 H 1.08994 * 109.46572 * 60.00415 * 16 14 13 44 44 H 1.09002 * 109.46805 * 180.02562 * 16 14 13 45 45 H 1.08997 * 109.46537 * 300.00408 * 16 14 13 46 46 H 1.09006 * 109.47320 * 59.99541 * 17 14 13 47 47 H 1.09003 * 109.47543 * 179.97438 * 17 14 13 48 48 H 1.09003 * 109.47348 * 300.00047 * 17 14 13 49 49 H 0.96988 * 120.00203 * 95.00045 * 20 2 1 50 50 H 0.97002 * 119.99932 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3134 6 7 4.0532 -1.3038 -2.5098 7 6 5.3740 -1.3390 -2.7755 8 8 6.1522 -0.7201 -2.0748 9 6 5.8746 -2.1261 -3.9127 10 6 7.2439 -2.2695 -4.1277 11 6 7.6811 -3.0238 -5.2164 12 6 6.7798 -3.6060 -6.0481 13 7 5.4476 -3.4709 -5.8453 14 6 4.5091 -4.1162 -6.7666 15 6 5.2899 -4.8659 -7.8479 16 6 3.6331 -5.1040 -5.9933 17 6 3.6240 -3.0533 -7.4206 18 6 4.9719 -2.7575 -4.8070 19 8 3.7694 -2.6515 -4.6380 20 7 2.0183 -0.6906 1.1963 21 6 2.1490 -0.0072 2.3758 22 1 1.8925 1.0408 2.4241 23 6 2.6121 -0.6613 3.5092 24 7 2.9251 -1.9384 3.4503 25 14 2.7897 0.2705 5.1184 26 1 1.5221 0.1785 5.8863 27 1 3.8947 -0.3220 5.9142 28 1 3.0939 1.6960 4.8339 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6055 -0.2620 -2.1369 33 1 1.7517 -1.7717 -1.2053 34 1 3.9994 -1.0729 -0.4257 35 1 3.8533 0.4368 -1.3573 36 1 3.4259 -1.7347 -3.1111 37 1 7.9553 -1.8040 -3.4618 38 1 8.7388 -3.1456 -5.3976 39 1 7.1317 -4.1878 -6.8872 40 1 5.9204 -5.6232 -7.3817 41 1 4.5918 -5.3465 -8.5332 42 1 5.9144 -4.1625 -8.3988 43 1 3.0768 -4.5701 -5.2229 44 1 2.9351 -5.5844 -6.6790 45 1 4.2637 -5.8612 -5.5275 46 1 4.2481 -2.3496 -7.9715 47 1 2.9260 -3.5335 -8.1065 48 1 3.0677 -2.5195 -6.6501 49 1 2.2489 -1.6316 1.1529 50 1 3.2484 -2.3956 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713417943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:27 Heat of formation + Delta-G solvation = -52.515265 kcal Electronic energy + Delta-G solvation = -29499.837006 eV Core-core repulsion = 25526.939133 eV Total energy + Delta-G solvation = -3972.897872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.91294 -40.54676 -38.37489 -38.20399 -37.38044 -35.69995 -34.11134 -33.19019 -31.47789 -30.87281 -29.64918 -28.57242 -28.34372 -26.09013 -25.57257 -24.69733 -23.66537 -22.23382 -21.54043 -20.92670 -19.34531 -18.86715 -18.15963 -18.06676 -17.10370 -16.99547 -16.84765 -16.51137 -16.25382 -15.61391 -15.44193 -15.35889 -15.23740 -15.16497 -14.80539 -14.47423 -14.16759 -13.83367 -13.64738 -13.57773 -13.29250 -13.13467 -13.09425 -13.03325 -12.82198 -12.78552 -12.66224 -12.57325 -12.34559 -12.26002 -12.17335 -12.15221 -12.10083 -11.69276 -11.62976 -11.15050 -11.07203 -10.94637 -10.72788 -10.04650 -9.07559 -8.99899 -7.92837 -5.20762 -0.57705 0.78618 1.42403 1.44461 1.47370 1.55408 1.71621 2.36783 2.56473 2.71072 3.37914 3.40551 3.65266 3.80829 3.82610 3.86598 3.87050 3.92387 3.95466 4.00085 4.17552 4.24146 4.33202 4.54066 4.62326 4.63381 4.65893 4.68946 4.77125 4.84141 4.85554 4.88322 4.92701 4.96438 5.02985 5.07444 5.15330 5.20406 5.24879 5.30018 5.31391 5.34014 5.49031 5.51986 5.56856 5.58441 5.97450 6.29239 6.59933 6.89069 7.34430 7.35125 8.10956 8.34309 9.31132 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002514 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.616441 B =11135.779435 C =11946.700466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 H 0.045 0.955 4 C -0.113 4.113 5 C 0.132 3.868 6 N -0.712 5.712 7 C 0.560 3.440 8 O -0.601 6.601 9 C -0.327 4.327 10 C 0.070 3.930 11 C -0.240 4.240 12 C 0.177 3.823 13 N -0.477 5.477 14 C 0.139 3.861 15 C -0.161 4.161 16 C -0.166 4.166 17 C -0.163 4.163 18 C 0.528 3.472 19 O -0.566 6.566 20 N -0.735 5.735 21 C -0.234 4.234 22 H 0.076 0.924 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.271 1.271 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.417 0.583 37 H 0.142 0.858 38 H 0.197 0.803 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.052 0.948 49 H 0.370 0.630 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.391 -9.198 -34.152 36.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.063 0.937 4 C -0.151 4.151 5 C 0.008 3.992 6 N -0.373 5.373 7 C 0.349 3.651 8 O -0.485 6.485 9 C -0.334 4.334 10 C 0.046 3.954 11 C -0.261 4.261 12 C 0.046 3.954 13 N -0.183 5.183 14 C 0.058 3.942 15 C -0.218 4.218 16 C -0.223 4.223 17 C -0.220 4.220 18 C 0.331 3.669 19 O -0.452 6.452 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.093 0.907 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.196 1.196 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.264 0.736 37 H 0.160 0.840 38 H 0.214 0.786 39 H 0.243 0.757 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.071 0.929 49 H 0.202 0.798 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.018 -8.605 -33.523 35.526 hybrid contribution -0.165 0.130 1.648 1.661 sum 7.852 -8.476 -31.875 33.905 Atomic orbital electron populations 1.22246 0.96866 1.01030 1.01004 1.20425 0.93322 0.95077 0.85329 0.93739 1.21869 0.92708 1.01578 0.98985 1.21093 0.95334 0.96109 0.86647 1.46607 1.08057 1.55922 1.26692 1.18186 0.82509 0.80346 0.84013 1.90738 1.57344 1.47522 1.52891 1.20844 0.95967 1.13866 1.02712 1.22312 0.93237 0.86619 0.93264 1.21155 1.02874 1.05185 0.96921 1.23306 0.81014 0.92472 0.98568 1.45815 1.08245 1.40656 1.23560 1.21341 0.89884 0.93608 0.89378 1.22369 1.01693 1.00881 0.96884 1.22239 1.00361 0.98219 1.01496 1.22213 1.00210 0.98584 1.01026 1.16787 0.88489 0.80121 0.81498 1.90521 1.16263 1.64393 1.73984 1.42650 1.78431 1.10182 1.06307 1.19633 1.34528 0.94153 0.88314 0.90658 1.25566 1.03176 0.96960 1.01568 1.69836 1.52927 1.10316 1.29253 0.85150 0.76891 0.77973 0.79857 1.21168 1.22426 1.19577 0.93771 0.94254 0.90753 0.88700 0.91859 0.94538 0.93189 0.73628 0.84020 0.78621 0.75735 0.89483 0.88294 0.89190 0.92954 0.88760 0.92062 0.91690 0.88794 0.92927 0.79818 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 9.49 71.98 0.68 -4.98 16 2 C 0.17 7.17 2.89 44.99 0.13 7.30 16 3 H 0.04 1.95 8.08 -2.39 -0.02 1.93 16 4 C -0.11 -4.24 4.87 30.60 0.15 -4.09 16 5 C 0.13 5.67 5.57 86.38 0.48 6.15 16 6 N -0.71 -27.94 5.47 -466.69 -2.55 -30.49 16 7 C 0.56 22.38 7.73 86.56 0.67 23.05 16 8 O -0.60 -28.34 16.41 -4.16 -0.07 -28.40 16 9 C -0.33 -9.60 5.92 -19.79 -0.12 -9.72 16 10 C 0.07 1.44 9.70 22.83 0.22 1.66 16 11 C -0.24 -2.15 9.99 21.99 0.22 -1.93 16 12 C 0.18 1.12 9.58 83.56 0.80 1.92 16 13 N -0.48 -6.77 2.53 -605.54 -1.53 -8.31 16 14 C 0.14 1.38 1.02 3.60 0.00 1.38 16 15 C -0.16 0.00 7.09 71.98 0.51 0.51 16 16 C -0.17 -2.21 8.39 71.98 0.60 -1.61 16 17 C -0.16 -1.96 8.40 71.98 0.60 -1.35 16 18 C 0.53 13.35 6.84 85.17 0.58 13.94 16 19 O -0.57 -17.03 9.83 -4.96 -0.05 -17.08 16 20 N -0.74 -39.95 4.57 -322.92 -1.48 -41.42 16 21 C -0.23 -13.88 9.93 84.03 0.83 -13.05 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 24 N -0.97 -63.47 13.06 21.65 0.28 -63.18 16 25 Si 0.97 49.28 29.55 68.60 2.03 51.31 16 26 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 28 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.04 1.87 7.75 -2.39 -0.02 1.86 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.42 15.17 5.07 -92.77 -0.47 14.70 16 37 H 0.14 3.08 7.70 -2.91 -0.02 3.05 16 38 H 0.20 0.12 8.06 -2.91 -0.02 0.09 16 39 H 0.23 -1.03 5.55 -2.91 -0.02 -1.04 16 40 H 0.09 -0.23 7.41 -2.38 -0.02 -0.24 16 41 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.09 -0.30 7.41 -2.38 -0.02 -0.31 16 43 H 0.05 1.13 6.09 -2.39 -0.01 1.12 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.05 1.05 6.14 -2.39 -0.01 1.04 16 49 H 0.37 21.80 7.80 -92.72 -0.72 21.08 16 50 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -88.15 398.40 3.23 -84.92 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.24 Total: 37.97 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.84 Total: 14.69 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -5.28 Total: -143.40 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.12 Total: -45.49 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.03 Total: 51.31 kcal Total: -88.15 3.23 -84.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713417943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.405 kcal (2) G-P(sol) polarization free energy of solvation -88.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds