Wall clock time and date at job start Tue Mar 31 2020 19:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.47125 * 2 1 4 4 C 1.53001 * 109.46602 * 240.00170 * 2 1 3 5 5 C 1.53003 * 109.46783 * 174.99714 * 4 2 1 6 6 N 1.46499 * 109.47183 * 179.97438 * 5 4 2 7 7 C 1.36931 * 120.00245 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00080 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00121 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47156 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47404 * 119.99249 * 11 9 7 14 14 H 1.48494 * 109.46938 * 239.99474 * 11 9 7 15 15 N 1.46491 * 109.47285 * 120.00345 * 2 1 3 16 16 C 1.34782 * 119.99956 * 275.00185 * 15 2 1 17 17 O 1.21492 * 120.00127 * 359.97438 * 16 15 2 18 18 C 1.48329 * 119.99663 * 180.02562 * 16 15 2 19 19 N 1.31499 * 127.15988 * 0.03841 * 18 16 15 20 20 O 1.21425 * 111.52735 * 179.97438 * 19 18 16 21 21 C 1.33189 * 111.56947 * 359.94778 * 20 19 18 22 22 C 1.35376 * 106.63798 * 0.08923 * 21 20 19 23 23 C 1.50061 * 124.93750 * 179.79437 * 22 21 20 24 24 C 1.53542 * 108.23267 * 343.89015 * 23 22 21 25 25 C 1.53000 * 109.46366 * 169.21177 * 24 23 22 26 26 C 1.53003 * 109.46570 * 289.18728 * 24 23 22 27 27 C 1.53070 * 109.52744 * 49.18349 * 24 23 22 28 28 C 1.50606 * 129.60321 * 180.08817 * 21 20 19 29 29 H 1.09001 * 109.46703 * 59.99350 * 1 2 3 30 30 H 1.08991 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46607 * 299.99724 * 1 2 3 32 32 H 1.08996 * 109.47473 * 295.00099 * 4 2 1 33 33 H 1.08999 * 109.47148 * 55.00581 * 4 2 1 34 34 H 1.08996 * 109.47431 * 300.00411 * 5 4 2 35 35 H 1.08999 * 109.46571 * 60.00513 * 5 4 2 36 36 H 0.96999 * 119.99950 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00157 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00443 * 94.99458 * 15 2 1 39 39 H 1.08999 * 109.71517 * 103.57685 * 23 22 21 40 40 H 1.09001 * 109.70474 * 224.16514 * 23 22 21 41 41 H 1.09001 * 109.47225 * 60.00464 * 25 24 23 42 42 H 1.08999 * 109.47146 * 179.97438 * 25 24 23 43 43 H 1.08998 * 109.47424 * 299.99879 * 25 24 23 44 44 H 1.09001 * 109.47050 * 59.99943 * 26 24 23 45 45 H 1.09004 * 109.47436 * 180.02562 * 26 24 23 46 46 H 1.09000 * 109.46920 * 299.99770 * 26 24 23 47 47 H 1.09006 * 109.43141 * 170.08814 * 27 24 23 48 48 H 1.08996 * 109.40835 * 50.25876 * 27 24 23 49 49 H 1.09004 * 109.69489 * 282.99525 * 28 21 20 50 50 H 1.09006 * 109.69425 * 43.58104 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5097 7 6 5.3952 -1.3412 -2.7791 8 1 6.0938 -0.8611 -2.1098 9 6 5.8579 -1.9956 -3.9126 10 7 5.0067 -2.5811 -4.7280 11 14 7.6888 -2.0465 -4.2797 12 1 8.4273 -1.3194 -3.2162 13 1 8.1459 -3.4587 -4.3233 14 1 7.9485 -1.4014 -5.5918 15 7 2.0184 -0.6906 1.1960 16 6 2.1471 -0.0183 2.3571 17 8 1.8586 1.1606 2.4116 18 6 2.6422 -0.7175 3.5680 19 7 2.9942 -1.9806 3.6677 20 8 3.3578 -2.2542 4.7935 21 6 3.2952 -1.1955 5.5991 22 6 2.8334 -0.1660 4.8512 23 6 2.6012 1.2275 5.3572 24 6 2.5786 1.1837 6.8919 25 6 2.6137 2.6105 7.4431 26 6 1.3008 0.4865 7.3633 27 6 3.7981 0.4104 7.3997 28 6 3.6469 -1.0778 7.0588 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9994 -1.0729 -0.4262 36 1 3.4258 -1.7358 -3.1107 37 1 5.3300 -3.0387 -5.5199 38 1 2.2491 -1.6318 1.1525 39 1 3.4065 1.8801 5.0199 40 1 1.6465 1.5993 4.9853 41 1 1.7447 3.1609 7.0825 42 1 2.5971 2.5796 8.5326 43 1 3.5237 3.1076 7.1072 44 1 1.2754 -0.5299 6.9703 45 1 1.2844 0.4558 8.4527 46 1 0.4322 1.0374 7.0026 47 1 3.8780 0.5284 8.4804 48 1 4.6982 0.8015 6.9256 49 1 2.8529 -1.5147 7.6644 50 1 4.5857 -1.5965 7.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715666057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:59 Heat of formation + Delta-G solvation = 10.446541 kcal Electronic energy + Delta-G solvation = -29304.435915 eV Core-core repulsion = 25334.268271 eV Total energy + Delta-G solvation = -3970.167644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.28427 -39.82065 -39.34824 -36.59697 -34.38250 -34.19146 -33.20752 -31.95330 -30.86953 -30.31292 -27.88396 -27.74108 -27.56470 -25.03515 -24.11071 -23.77501 -22.01054 -21.67072 -20.81222 -20.42166 -18.78319 -18.03770 -17.65145 -17.06343 -16.68974 -16.08802 -15.45910 -15.03034 -14.92931 -14.78407 -14.57092 -14.24393 -13.93260 -13.70782 -13.57654 -13.49071 -13.44013 -13.31386 -12.84497 -12.52144 -12.44741 -12.36886 -12.15398 -12.04919 -11.89487 -11.62408 -11.22114 -11.09536 -11.03704 -11.02728 -10.80617 -10.79494 -10.65977 -10.56887 -10.38417 -10.17113 -10.00767 -9.69890 -9.31988 -9.09136 -8.85963 -6.91490 -5.75781 -3.04443 0.97236 1.48828 2.63906 2.94964 3.12372 3.44245 3.49832 3.52251 3.82908 4.15429 4.20467 4.30640 4.56390 4.58701 4.62252 4.75862 4.84109 4.92218 4.94010 5.17091 5.18159 5.23530 5.28219 5.32728 5.34945 5.37860 5.41931 5.45021 5.55482 5.55889 5.61434 5.69174 5.70558 5.73627 5.75470 5.91163 5.92154 5.97996 5.99339 6.03572 6.22493 6.26392 6.32822 6.45699 6.81782 6.85692 7.39219 7.71772 7.84622 8.08114 8.43209 9.54360 10.11753 10.46769 11.47254 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.002448 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.858164 B =11436.769251 C =12360.340445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.702 5.702 16 C 0.600 3.400 17 O -0.524 6.524 18 C -0.016 4.016 19 N -0.333 5.333 20 O 0.129 5.871 21 C -0.041 4.041 22 C -0.148 4.148 23 C -0.034 4.034 24 C -0.069 4.069 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.109 4.109 28 C -0.035 4.035 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.408 0.592 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 6.171 28.991 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.353 5.353 16 C 0.384 3.616 17 O -0.399 6.399 18 C -0.174 4.174 19 N -0.034 5.034 20 O 0.055 5.945 21 C -0.105 4.105 22 C -0.153 4.153 23 C -0.071 4.071 24 C -0.069 4.069 25 C -0.197 4.197 26 C -0.203 4.203 27 C -0.146 4.146 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.114 0.886 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.217 6.076 28.079 30.171 hybrid contribution 0.893 -0.182 -0.350 0.977 sum -8.323 5.894 27.728 29.545 Atomic orbital electron populations 1.22169 0.95112 1.02204 1.02456 1.21087 0.93786 0.97741 0.83319 0.88995 1.22076 0.98147 1.00918 0.96207 1.20636 0.90324 0.95646 0.90815 1.42359 1.05410 1.64930 1.25066 1.19275 0.83821 1.28386 1.05417 0.91231 1.24749 0.97763 1.00916 0.97679 1.69670 1.32690 1.40783 1.15140 0.86108 0.85058 0.77237 0.77771 1.20564 1.21828 1.21821 1.46023 1.65589 1.14638 1.09073 1.16823 0.77753 0.85759 0.81314 1.90767 1.50367 1.14500 1.84297 1.23068 1.06246 0.91219 0.96898 1.74610 1.13783 1.16187 0.98865 1.84693 1.61164 1.34521 1.14121 1.24108 1.03539 0.86200 0.96659 1.20600 1.04625 0.98931 0.91166 1.20088 1.03827 0.89942 0.93233 1.20720 0.95519 0.96126 0.94493 1.21835 1.02360 0.94822 1.00730 1.21969 0.96633 1.00722 1.00932 1.21726 0.98506 0.92549 1.01825 1.20284 1.03351 0.98655 0.85033 0.91202 0.92404 0.92357 0.91231 0.89927 0.96367 0.96451 0.78295 0.93570 0.75663 0.89767 0.89212 0.92197 0.92341 0.92303 0.92448 0.92339 0.92393 0.89964 0.90877 0.88564 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 2 C 0.14 2.06 2.57 -67.93 -0.17 1.89 16 3 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.14 -2.18 4.87 -26.73 -0.13 -2.31 16 5 C 0.15 3.21 6.15 -4.04 -0.02 3.19 16 6 N -0.73 -19.19 5.60 -59.91 -0.34 -19.53 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 11 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 N -0.70 -10.16 4.53 -54.60 -0.25 -10.41 16 16 C 0.60 9.17 7.81 -12.11 -0.09 9.08 16 17 O -0.52 -8.85 15.75 5.37 0.08 -8.76 16 18 C -0.02 -0.23 7.19 -82.82 -0.60 -0.82 16 19 N -0.33 -4.64 11.89 33.29 0.40 -4.24 16 20 O 0.13 1.53 11.18 19.19 0.21 1.74 16 21 C -0.04 -0.40 6.65 -35.37 -0.24 -0.63 16 22 C -0.15 -1.70 5.59 -104.91 -0.59 -2.29 16 23 C -0.03 -0.32 4.41 -27.91 -0.12 -0.44 16 24 C -0.07 -0.44 0.77 -154.19 -0.12 -0.56 16 25 C -0.14 -0.77 8.44 37.16 0.31 -0.45 16 26 C -0.15 -0.90 7.72 37.16 0.29 -0.61 16 27 C -0.11 -0.57 4.82 -26.48 -0.13 -0.69 16 28 C -0.04 -0.20 5.66 -27.71 -0.16 -0.36 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.38 7.75 -51.93 -0.40 -0.03 16 36 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 37 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.41 5.79 8.38 -40.82 -0.34 5.45 16 39 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.09 0.96 7.81 -51.93 -0.41 0.56 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.40 5.67 -51.93 -0.29 0.11 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 48 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 49 H 0.10 0.41 6.99 -51.93 -0.36 0.04 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -33.56 400.54 -8.21 -41.77 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.40 Total: 7.72 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.66 Total: -4.21 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.54 Total: -62.25 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.30 Total: -7.02 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.56 -8.21 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715666057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.216 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds