Wall clock time and date at job start Tue Mar 31 2020 19:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.47125 * 2 1 4 4 C 1.53001 * 109.46602 * 240.00170 * 2 1 3 5 5 C 1.53003 * 109.46783 * 174.99714 * 4 2 1 6 6 N 1.46499 * 109.47183 * 179.97438 * 5 4 2 7 7 C 1.36931 * 120.00245 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00126 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00080 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00121 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47156 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47404 * 119.99249 * 11 9 7 14 14 H 1.48494 * 109.46938 * 239.99474 * 11 9 7 15 15 N 1.46491 * 109.47285 * 120.00345 * 2 1 3 16 16 C 1.34782 * 119.99956 * 275.00185 * 15 2 1 17 17 O 1.21492 * 120.00127 * 359.97438 * 16 15 2 18 18 C 1.48329 * 119.99663 * 180.02562 * 16 15 2 19 19 N 1.31499 * 127.15988 * 0.03841 * 18 16 15 20 20 O 1.21425 * 111.52735 * 179.97438 * 19 18 16 21 21 C 1.33189 * 111.56947 * 359.94778 * 20 19 18 22 22 C 1.35376 * 106.63798 * 0.08923 * 21 20 19 23 23 C 1.50061 * 124.93750 * 179.79437 * 22 21 20 24 24 C 1.53542 * 108.23267 * 343.89015 * 23 22 21 25 25 C 1.53000 * 109.46366 * 169.21177 * 24 23 22 26 26 C 1.53003 * 109.46570 * 289.18728 * 24 23 22 27 27 C 1.53070 * 109.52744 * 49.18349 * 24 23 22 28 28 C 1.50606 * 129.60321 * 180.08817 * 21 20 19 29 29 H 1.09001 * 109.46703 * 59.99350 * 1 2 3 30 30 H 1.08991 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46607 * 299.99724 * 1 2 3 32 32 H 1.08996 * 109.47473 * 295.00099 * 4 2 1 33 33 H 1.08999 * 109.47148 * 55.00581 * 4 2 1 34 34 H 1.08996 * 109.47431 * 300.00411 * 5 4 2 35 35 H 1.08999 * 109.46571 * 60.00513 * 5 4 2 36 36 H 0.96999 * 119.99950 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00157 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00443 * 94.99458 * 15 2 1 39 39 H 1.08999 * 109.71517 * 103.57685 * 23 22 21 40 40 H 1.09001 * 109.70474 * 224.16514 * 23 22 21 41 41 H 1.09001 * 109.47225 * 60.00464 * 25 24 23 42 42 H 1.08999 * 109.47146 * 179.97438 * 25 24 23 43 43 H 1.08998 * 109.47424 * 299.99879 * 25 24 23 44 44 H 1.09001 * 109.47050 * 59.99943 * 26 24 23 45 45 H 1.09004 * 109.47436 * 180.02562 * 26 24 23 46 46 H 1.09000 * 109.46920 * 299.99770 * 26 24 23 47 47 H 1.09006 * 109.43141 * 170.08814 * 27 24 23 48 48 H 1.08996 * 109.40835 * 50.25876 * 27 24 23 49 49 H 1.09004 * 109.69489 * 282.99525 * 28 21 20 50 50 H 1.09006 * 109.69425 * 43.58104 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5097 7 6 5.3952 -1.3412 -2.7791 8 1 6.0938 -0.8611 -2.1098 9 6 5.8579 -1.9956 -3.9126 10 7 5.0067 -2.5811 -4.7280 11 14 7.6888 -2.0465 -4.2797 12 1 8.4273 -1.3194 -3.2162 13 1 8.1459 -3.4587 -4.3233 14 1 7.9485 -1.4014 -5.5918 15 7 2.0184 -0.6906 1.1960 16 6 2.1471 -0.0183 2.3571 17 8 1.8586 1.1606 2.4116 18 6 2.6422 -0.7175 3.5680 19 7 2.9942 -1.9806 3.6677 20 8 3.3578 -2.2542 4.7935 21 6 3.2952 -1.1955 5.5991 22 6 2.8334 -0.1660 4.8512 23 6 2.6012 1.2275 5.3572 24 6 2.5786 1.1837 6.8919 25 6 2.6137 2.6105 7.4431 26 6 1.3008 0.4865 7.3633 27 6 3.7981 0.4104 7.3997 28 6 3.6469 -1.0778 7.0588 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9994 -1.0729 -0.4262 36 1 3.4258 -1.7358 -3.1107 37 1 5.3300 -3.0387 -5.5199 38 1 2.2491 -1.6318 1.1525 39 1 3.4065 1.8801 5.0199 40 1 1.6465 1.5993 4.9853 41 1 1.7447 3.1609 7.0825 42 1 2.5971 2.5796 8.5326 43 1 3.5237 3.1076 7.1072 44 1 1.2754 -0.5299 6.9703 45 1 1.2844 0.4558 8.4527 46 1 0.4322 1.0374 7.0026 47 1 3.8780 0.5284 8.4804 48 1 4.6982 0.8015 6.9256 49 1 2.8529 -1.5147 7.6644 50 1 4.5857 -1.5965 7.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715666057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:58 Heat of formation + Delta-G solvation = -10.626697 kcal Electronic energy + Delta-G solvation = -29305.349719 eV Core-core repulsion = 25334.268271 eV Total energy + Delta-G solvation = -3971.081448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.24073 -41.01536 -39.95584 -38.00478 -36.21044 -35.17266 -33.90820 -33.61342 -32.24952 -31.22650 -29.50280 -28.36832 -28.11246 -26.22156 -25.67244 -24.58404 -23.32254 -22.85512 -22.09774 -21.53525 -19.60008 -19.21167 -18.97264 -18.38723 -17.78159 -17.29661 -16.75006 -16.18820 -15.94257 -15.62791 -15.57467 -15.47453 -15.27002 -15.22598 -14.95286 -14.45128 -14.34494 -14.23849 -14.02721 -13.72525 -13.17895 -13.07337 -12.98943 -12.95099 -12.90377 -12.67288 -12.58004 -12.47054 -12.29613 -12.27596 -12.06563 -12.04021 -11.71711 -11.68470 -11.61588 -11.49072 -11.26188 -11.17669 -11.01446 -10.29728 -10.13137 -9.07448 -8.01213 -5.30950 -0.02962 0.60320 1.43395 1.44443 1.54757 1.73951 1.94520 1.98341 2.50827 2.81936 3.32037 3.40523 3.53329 3.57599 3.81006 3.90660 3.94930 3.97523 4.06332 4.10782 4.19231 4.31299 4.40546 4.45594 4.47674 4.54053 4.63779 4.67934 4.72014 4.75399 4.79464 4.88796 4.90333 4.91594 5.01119 5.06845 5.08892 5.13806 5.15357 5.18341 5.23235 5.24199 5.36786 5.39799 5.42358 5.47097 5.54233 6.19795 6.22221 6.82113 6.98039 7.27682 8.01147 8.26612 9.22227 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.002448 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.858164 B =11436.769251 C =12360.340445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.079 0.921 4 C -0.119 4.119 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.251 4.251 8 H 0.069 0.931 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.975 3.025 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.289 1.289 15 N -0.700 5.700 16 C 0.597 3.403 17 O -0.547 6.547 18 C -0.042 4.042 19 N -0.356 5.356 20 O 0.131 5.869 21 C -0.022 4.022 22 C -0.166 4.166 23 C -0.032 4.032 24 C -0.064 4.064 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.106 4.106 28 C -0.035 4.035 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.377 0.623 37 H 0.253 0.747 38 H 0.409 0.591 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.113 0.887 48 H 0.067 0.933 49 H 0.120 0.880 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 6.064 31.519 33.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.388 5.388 7 C -0.382 4.382 8 H 0.087 0.913 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.216 1.216 15 N -0.352 5.352 16 C 0.382 3.618 17 O -0.424 6.424 18 C -0.198 4.198 19 N -0.057 5.057 20 O 0.057 5.943 21 C -0.087 4.087 22 C -0.171 4.171 23 C -0.069 4.069 24 C -0.064 4.064 25 C -0.196 4.196 26 C -0.200 4.200 27 C -0.144 4.144 28 C -0.073 4.073 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.209 0.791 37 H 0.062 0.938 38 H 0.245 0.755 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.131 0.869 48 H 0.086 0.914 49 H 0.137 0.863 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.769 5.982 30.622 32.410 hybrid contribution 0.743 -0.131 -1.067 1.307 sum -8.025 5.851 29.555 31.179 Atomic orbital electron populations 1.22091 0.92922 1.03029 1.02999 1.21014 0.95351 0.96607 0.82380 0.90261 1.21916 0.94571 1.01704 0.97519 1.20733 0.93543 0.94322 0.88621 1.42536 1.04581 1.65291 1.26354 1.19609 0.85193 1.27995 1.05450 0.91326 1.25591 1.02271 1.00996 0.97687 1.69811 1.34598 1.41703 1.15554 0.85061 0.79822 0.77164 0.77629 1.19423 1.21600 1.21566 1.46047 1.65424 1.14633 1.09053 1.17040 0.77362 0.85590 0.81827 1.90741 1.51484 1.15404 1.84775 1.23099 1.07505 0.91805 0.97408 1.74587 1.14853 1.16266 1.00022 1.84653 1.60570 1.35225 1.13853 1.24895 1.01167 0.84671 0.97931 1.20875 1.05479 1.00250 0.90513 1.20110 1.02241 0.88706 0.95879 1.20713 0.96598 0.97231 0.91862 1.21825 1.01930 0.93938 1.01861 1.21957 0.95933 0.99850 1.02308 1.21772 0.97283 0.91733 1.03563 1.20631 1.05179 0.99468 0.82014 0.89603 0.91423 0.92837 0.90617 0.89115 0.97086 0.96966 0.79121 0.93770 0.75513 0.90848 0.91212 0.93017 0.90360 0.92492 0.93318 0.90004 0.93502 0.86884 0.91449 0.86254 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.48 71.99 0.68 -2.86 16 2 C 0.15 4.30 2.57 45.00 0.12 4.41 16 3 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 4 C -0.12 -3.81 4.87 30.60 0.15 -3.66 16 5 C 0.15 6.55 6.15 86.38 0.53 7.08 16 6 N -0.74 -39.47 5.60 -343.45 -1.92 -41.40 16 7 C -0.25 -14.66 9.99 84.04 0.84 -13.82 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 11 Si 0.97 47.35 29.55 68.60 2.03 49.37 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 N -0.70 -20.80 4.53 -444.94 -2.01 -22.81 16 16 C 0.60 19.01 7.81 86.93 0.68 19.69 16 17 O -0.55 -19.33 15.75 -3.69 -0.06 -19.38 16 18 C -0.04 -1.20 7.19 42.55 0.31 -0.90 16 19 N -0.36 -10.08 11.89 -48.94 -0.58 -10.66 16 20 O 0.13 3.05 11.18 78.70 0.88 3.93 16 21 C -0.02 -0.40 6.65 24.99 0.17 -0.24 16 22 C -0.17 -3.83 5.59 -20.05 -0.11 -3.95 16 23 C -0.03 -0.62 4.41 29.83 0.13 -0.49 16 24 C -0.06 -0.72 0.77 -51.97 -0.04 -0.76 16 25 C -0.14 -1.28 8.44 71.98 0.61 -0.67 16 26 C -0.14 -1.50 7.72 71.98 0.56 -0.94 16 27 C -0.11 -0.78 4.82 30.76 0.15 -0.63 16 28 C -0.04 -0.29 5.66 29.96 0.17 -0.12 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.01 0.54 7.75 -2.39 -0.02 0.52 16 36 H 0.38 20.73 7.67 -92.71 -0.71 20.02 16 37 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.41 11.91 8.38 -92.71 -0.78 11.14 16 39 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 40 H 0.07 1.61 7.81 -2.39 -0.02 1.60 16 41 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.05 0.59 5.67 -2.39 -0.01 0.58 16 45 H 0.08 0.48 8.14 -2.38 -0.02 0.47 16 46 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.11 0.23 8.11 -2.38 -0.02 0.21 16 48 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 49 H 0.12 0.52 6.99 -2.38 -0.02 0.51 16 50 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -73.50 400.54 3.47 -70.03 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.54 Total: 32.41 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.40 Total: -1.71 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -4.24 Total: -134.65 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.82 Total: -15.45 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -73.50 3.47 -70.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715666057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.399 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds