Wall clock time and date at job start Tue Mar 31 2020 19:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46656 * 2 1 4 4 C 1.53000 * 109.46885 * 119.99805 * 2 1 3 5 5 O 1.42901 * 109.47068 * 175.00150 * 4 2 1 6 6 C 1.35428 * 117.00172 * 179.97438 * 5 4 2 7 7 N 1.32233 * 119.79945 * 359.72922 * 6 5 4 8 8 C 1.31882 * 121.80160 * 180.27301 * 7 6 5 9 9 C 1.38357 * 121.18290 * 0.02562 * 8 7 6 10 10 C 1.38336 * 119.45900 * 359.97438 * 9 8 7 11 11 C 1.39983 * 118.35186 * 0.02562 * 10 9 8 12 12 C 1.47525 * 120.59846 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99789 * 180.02562 * 12 11 10 14 14 N 1.34771 * 120.00061 * 0.02562 * 12 11 10 15 15 C 1.46498 * 120.00285 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.47243 * 34.99430 * 15 14 12 17 17 C 1.53006 * 109.47087 * 275.00030 * 15 14 12 18 18 C 1.52997 * 109.47477 * 154.99941 * 15 14 12 19 19 C 1.53008 * 109.46884 * 294.99832 * 18 15 14 20 20 N 1.46493 * 109.46956 * 180.02562 * 19 18 15 21 21 C 1.36938 * 119.99978 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00177 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00317 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99786 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00155 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47328 * 90.00045 * 25 23 21 27 27 H 1.48504 * 109.46902 * 210.00038 * 25 23 21 28 28 H 1.48498 * 109.47146 * 329.99573 * 25 23 21 29 29 H 1.08993 * 109.47444 * 300.00076 * 1 2 3 30 30 H 1.09000 * 109.46840 * 60.00301 * 1 2 3 31 31 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47369 * 240.00399 * 2 1 3 33 33 H 1.08990 * 109.47643 * 299.99866 * 3 2 1 34 34 H 1.09006 * 109.47238 * 60.00147 * 3 2 1 35 35 H 1.09002 * 109.46714 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47017 * 55.00766 * 4 2 1 37 37 H 1.09001 * 109.47207 * 295.00042 * 4 2 1 38 38 H 1.07996 * 119.40919 * 179.97438 * 8 7 6 39 39 H 1.07994 * 120.27033 * 179.97438 * 9 8 7 40 40 H 1.08001 * 120.82338 * 179.97438 * 10 9 8 41 41 H 0.97002 * 120.00089 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.46589 * 299.99800 * 17 15 14 43 43 H 1.08997 * 109.46904 * 59.99716 * 17 15 14 44 44 H 1.08991 * 109.46928 * 179.97438 * 17 15 14 45 45 H 1.08999 * 109.47297 * 54.99673 * 18 15 14 46 46 H 1.08998 * 109.46961 * 175.00069 * 18 15 14 47 47 H 1.08999 * 109.47024 * 300.00008 * 19 18 15 48 48 H 1.09004 * 109.47085 * 59.99876 * 19 18 15 49 49 H 0.97003 * 120.00695 * 359.97438 * 20 19 18 50 50 H 0.96991 * 119.99795 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8238 1.1921 6 6 4.0784 -1.4401 2.2299 7 7 3.3586 -1.9081 3.2355 8 6 3.9160 -2.5100 4.2682 9 6 5.2871 -2.6786 4.3448 10 6 6.0887 -2.2081 3.3201 11 6 5.4750 -1.5726 2.2343 12 6 6.2823 -1.0516 1.1149 13 8 5.7379 -0.5010 0.1774 14 7 7.6232 -1.1859 1.1314 15 6 8.4250 -0.6681 0.0200 16 1 7.9712 0.2474 -0.3598 17 6 8.4811 -1.7112 -1.0979 18 6 9.8431 -0.3690 0.5101 19 6 9.7991 0.7625 1.5391 20 7 11.1570 1.0493 2.0079 21 6 11.3668 2.0311 2.9392 22 1 10.5312 2.5943 3.3277 23 6 12.6535 2.3026 3.3839 24 7 13.6719 1.6158 2.9108 25 14 12.9397 3.6424 4.6537 26 1 12.8589 3.0582 6.0165 27 1 14.2843 4.2387 4.4496 28 1 11.9034 4.6954 4.5043 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7516 -0.1583 2.1370 38 1 3.2910 -2.8772 5.0687 39 1 5.7280 -3.1733 5.1975 40 1 7.1614 -2.3275 3.3574 41 1 8.0575 -1.6248 1.8794 42 1 8.9349 -2.6266 -0.7181 43 1 7.4708 -1.9243 -1.4471 44 1 9.0773 -1.3257 -1.9249 45 1 10.2645 -1.2626 0.9706 46 1 10.4635 -0.0683 -0.3342 47 1 9.3778 1.6561 1.0786 48 1 9.1787 0.4619 2.3834 49 1 11.9076 0.5433 1.6593 50 1 14.5708 1.8052 3.2218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716187018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:18 Heat of formation + Delta-G solvation = -44.565633 kcal Electronic energy + Delta-G solvation = -28940.311861 eV Core-core repulsion = 24967.758710 eV Total energy + Delta-G solvation = -3972.553150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09416 -39.34611 -38.40336 -36.43428 -35.46805 -34.33181 -33.21109 -31.67802 -30.96265 -30.22649 -27.85546 -27.36142 -26.81710 -24.97543 -23.95128 -23.19456 -21.83288 -21.06884 -20.52146 -20.28776 -18.73852 -17.73556 -17.23402 -16.94622 -16.48333 -15.90088 -15.30338 -15.19804 -14.82017 -14.59856 -14.55182 -14.33273 -13.77266 -13.66267 -13.49653 -13.38516 -13.18839 -13.17885 -12.84076 -12.81390 -12.55601 -12.39989 -12.33212 -11.82049 -11.61190 -11.28606 -11.19938 -11.01781 -10.94876 -10.83284 -10.78776 -10.64105 -10.55067 -10.21645 -10.19949 -10.04467 -9.70689 -9.62005 -8.99123 -8.86294 -8.69153 -6.92711 -5.77250 -3.05856 0.47583 1.00376 2.77796 2.88358 3.18060 3.43027 3.48463 3.50341 3.67645 3.99863 4.45425 4.54422 4.56971 4.59111 4.61562 4.70862 4.82000 4.97819 4.99797 5.20146 5.21599 5.27564 5.30355 5.34049 5.38476 5.45333 5.55395 5.58463 5.63155 5.70160 5.73913 5.76886 5.80837 5.83053 5.95666 5.99478 6.07031 6.11789 6.21435 6.25336 6.30391 6.35717 6.59137 6.82388 6.88098 7.07483 7.47192 7.63143 7.70086 8.32994 8.41975 9.52981 10.10803 10.45545 11.45682 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.002468 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.724687 B =11342.169569 C =11592.445074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.070 3.930 5 O -0.265 6.265 6 C 0.373 3.627 7 N -0.548 5.548 8 C 0.163 3.837 9 C -0.220 4.220 10 C -0.007 4.007 11 C -0.208 4.208 12 C 0.564 3.436 13 O -0.518 6.518 14 N -0.717 5.717 15 C 0.147 3.853 16 H 0.090 0.910 17 C -0.160 4.160 18 C -0.135 4.135 19 C 0.154 3.846 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.398 0.602 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.932 -11.744 -2.468 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.005 4.005 5 O -0.169 6.169 6 C 0.193 3.807 7 N -0.272 5.272 8 C 0.007 3.993 9 C -0.241 4.241 10 C -0.033 4.033 11 C -0.214 4.214 12 C 0.350 3.650 13 O -0.395 6.395 14 N -0.370 5.370 15 C 0.043 3.957 16 H 0.108 0.892 17 C -0.219 4.219 18 C -0.173 4.173 19 C 0.026 3.974 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.233 0.767 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.155 -10.936 -3.373 27.636 hybrid contribution 1.485 0.136 1.347 2.010 sum -23.670 -10.800 -2.026 26.096 Atomic orbital electron populations 1.21767 0.93939 1.02004 1.02387 1.21140 0.95534 0.97237 0.97459 1.21827 1.02673 0.94659 1.01379 1.22821 0.77935 1.00771 0.99011 1.86511 1.22447 1.70168 1.37807 1.19825 0.88079 0.87056 0.85745 1.67492 1.40275 1.16283 1.03199 1.22648 0.93057 0.90260 0.93385 1.21942 0.94813 1.06034 1.01291 1.21717 1.00795 0.90225 0.90527 1.20094 0.91765 1.10010 0.99543 1.17723 0.82096 0.79507 0.85686 1.90814 1.71361 1.42176 1.35106 1.45997 1.05983 1.60672 1.24310 1.20973 0.91223 0.97372 0.86137 0.89236 1.22161 1.02132 0.99154 0.98437 1.22069 0.94418 1.00208 1.00615 1.20634 0.88772 0.94149 0.93802 1.42370 1.02396 1.43223 1.49833 1.19232 0.92548 1.10373 1.14804 0.91270 1.24745 0.95604 1.00032 1.00702 1.69659 0.98490 1.43330 1.46820 0.86187 0.77158 0.81533 0.81328 1.21730 1.21735 1.20757 0.92387 0.91788 0.92492 0.90063 0.92614 0.92979 0.91197 0.91750 0.91598 0.81954 0.83800 0.83603 0.76724 0.92589 0.92367 0.91523 0.91402 0.90173 0.96382 0.96444 0.78320 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.19 37.16 0.34 -0.65 16 2 C -0.10 -0.90 3.16 -90.62 -0.29 -1.18 16 3 C -0.15 -1.50 9.09 37.16 0.34 -1.17 16 4 C 0.07 0.76 4.69 37.16 0.17 0.93 16 5 O -0.27 -3.73 7.75 -39.74 -0.31 -4.04 16 6 C 0.37 5.01 7.51 -16.61 -0.12 4.88 16 7 N -0.55 -6.32 9.21 -12.98 -0.12 -6.44 16 8 C 0.16 1.40 11.17 -17.49 -0.20 1.21 16 9 C -0.22 -1.76 10.09 -39.50 -0.40 -2.16 16 10 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 11 C -0.21 -2.68 5.90 -104.69 -0.62 -3.30 16 12 C 0.56 8.33 7.74 -12.48 -0.10 8.23 16 13 O -0.52 -9.25 14.86 -16.48 -0.24 -9.49 16 14 N -0.72 -9.33 4.48 -54.85 -0.25 -9.58 16 15 C 0.15 2.03 2.57 -67.93 -0.17 1.86 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.16 -1.92 9.48 37.16 0.35 -1.56 16 18 C -0.13 -2.07 4.87 -26.73 -0.13 -2.20 16 19 C 0.15 3.09 6.15 -4.04 -0.02 3.06 16 20 N -0.73 -18.60 5.60 -59.91 -0.34 -18.94 16 21 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 25 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 36 H 0.06 0.65 8.11 -51.93 -0.42 0.22 16 37 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.15 1.11 6.52 -52.49 -0.34 0.77 16 41 H 0.40 4.39 6.70 -40.82 -0.27 4.12 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 49 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 412.77 15.07 6.22 6.22 Total: -1.00 -34.47 412.77 -9.23 -43.71 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.44 Total: 8.49 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.46 Total: 0.07 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.02 Total: -62.47 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.55 Total: -13.53 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.47 -9.23 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716187018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.859 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds