Wall clock time and date at job start Tue Mar 31 2020 19:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46933 * 2 1 4 4 C 1.53001 * 109.46914 * 119.99477 * 2 1 3 5 5 O 1.42900 * 109.47122 * 65.00663 * 4 2 1 6 6 C 1.35429 * 117.00112 * 179.97438 * 5 4 2 7 7 N 1.32234 * 119.79971 * 359.97438 * 6 5 4 8 8 C 1.31876 * 121.80128 * 180.02562 * 7 6 5 9 9 C 1.38356 * 121.18729 * 359.97438 * 8 7 6 10 10 C 1.38343 * 119.45522 * 359.74124 * 9 8 7 11 11 C 1.39992 * 118.34674 * 0.50298 * 10 9 8 12 12 C 1.47531 * 120.59398 * 179.78206 * 11 10 9 13 13 O 1.21591 * 119.99801 * 179.71576 * 12 11 10 14 14 N 1.34773 * 120.00037 * 359.71567 * 12 11 10 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 11 16 16 H 1.08993 * 109.47452 * 324.99846 * 15 14 12 17 17 C 1.53006 * 109.46998 * 84.99768 * 15 14 12 18 18 C 1.52997 * 109.47007 * 204.99627 * 15 14 12 19 19 C 1.53001 * 109.47328 * 65.00131 * 18 15 14 20 20 N 1.46496 * 109.47207 * 179.97438 * 19 18 15 21 21 C 1.36936 * 119.99586 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00829 * 0.02562 * 21 20 19 23 23 C 1.38819 * 119.99842 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99811 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47209 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47011 * 120.00506 * 25 23 21 28 28 H 1.48502 * 109.47221 * 240.00152 * 25 23 21 29 29 H 1.08999 * 109.47195 * 60.00556 * 1 2 3 30 30 H 1.09005 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47198 * 299.99888 * 1 2 3 32 32 H 1.08995 * 109.47225 * 239.99560 * 2 1 3 33 33 H 1.09008 * 109.47322 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47040 * 299.99804 * 3 2 1 35 35 H 1.08995 * 109.47525 * 59.99743 * 3 2 1 36 36 H 1.08993 * 109.47825 * 304.99986 * 4 2 1 37 37 H 1.09006 * 109.46923 * 184.99882 * 4 2 1 38 38 H 1.07998 * 119.40942 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.27594 * 179.97438 * 9 8 7 40 40 H 1.08002 * 120.82444 * 180.25186 * 10 9 8 41 41 H 0.97003 * 120.00095 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.46801 * 60.00058 * 17 15 14 43 43 H 1.09001 * 109.46998 * 179.97438 * 17 15 14 44 44 H 1.09000 * 109.47050 * 299.99945 * 17 15 14 45 45 H 1.09002 * 109.47196 * 184.99891 * 18 15 14 46 46 H 1.09001 * 109.47630 * 304.99986 * 18 15 14 47 47 H 1.09002 * 109.46786 * 300.00010 * 19 18 15 48 48 H 1.09001 * 109.46883 * 59.99398 * 19 18 15 49 49 H 0.96999 * 120.00300 * 0.02562 * 20 19 18 50 50 H 0.97004 * 119.99514 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0393 -2.8828 2.2294 7 7 2.7263 -2.3616 3.2319 8 6 3.1141 -3.0892 4.2612 9 6 2.8166 -4.4382 4.3376 10 6 2.0948 -5.0344 3.3190 11 6 1.6985 -4.2435 2.2341 12 6 0.9312 -4.8294 1.1185 13 8 0.5880 -4.1312 0.1840 14 7 0.6106 -6.1383 1.1352 15 6 -0.1509 -6.7201 0.0271 16 1 -0.8645 -5.9867 -0.3481 17 6 0.8080 -7.1197 -1.0963 18 6 -0.9032 -7.9579 0.5198 19 6 -1.9498 -7.5403 1.5547 20 7 -2.6705 -8.7254 2.0260 21 6 -3.6611 -8.5967 2.9627 22 1 -3.9114 -7.6216 3.3537 23 6 -4.3445 -9.7196 3.4089 24 7 -4.0399 -10.9080 2.9321 25 14 -5.6963 -9.5441 4.6861 26 1 -5.8432 -8.1139 5.0580 27 1 -6.9766 -10.0440 4.1237 28 1 -5.3433 -10.3349 5.8924 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 3.6739 -2.6237 5.0588 39 1 3.1418 -5.0202 5.1872 40 1 1.8469 -6.0849 3.3580 41 1 0.8847 -6.6953 1.8805 42 1 1.5216 -7.8533 -0.7211 43 1 0.2415 -7.5530 -1.9206 44 1 1.3440 -6.2379 -1.4473 45 1 -1.3980 -8.4415 -0.3225 46 1 -0.1989 -8.6537 0.9757 47 1 -1.4549 -7.0567 2.3970 48 1 -2.6541 -6.8445 1.0988 49 1 -2.4456 -9.6013 1.6752 50 1 -4.5172 -11.6927 3.2442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716187019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:21 Heat of formation + Delta-G solvation = -44.649835 kcal Electronic energy + Delta-G solvation = -28940.246560 eV Core-core repulsion = 24967.689758 eV Total energy + Delta-G solvation = -3972.556802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09443 -39.34603 -38.40373 -36.43496 -35.46869 -34.33376 -33.21110 -31.67890 -30.96305 -30.22697 -27.85670 -27.36121 -26.81712 -24.97552 -23.95325 -23.19516 -21.83443 -21.06956 -20.52241 -20.28871 -18.73893 -17.73568 -17.23467 -16.94762 -16.48232 -15.90135 -15.30368 -15.19907 -14.82180 -14.59857 -14.55241 -14.33204 -13.77589 -13.66270 -13.49814 -13.38147 -13.18793 -13.18016 -12.84187 -12.81794 -12.55558 -12.39987 -12.33286 -11.82032 -11.61241 -11.28603 -11.20111 -11.02683 -10.94848 -10.83353 -10.79565 -10.63668 -10.55092 -10.21829 -10.19798 -10.01705 -9.71296 -9.62068 -8.99218 -8.86870 -8.69223 -6.92798 -5.77567 -3.06096 0.47572 1.00334 2.77798 2.88320 3.17989 3.42620 3.48651 3.50812 3.67602 3.99816 4.45417 4.54351 4.56874 4.59019 4.61530 4.70853 4.81971 4.97756 4.99774 5.20099 5.21544 5.27560 5.30294 5.34016 5.38376 5.45343 5.55287 5.58426 5.63147 5.70141 5.73784 5.76832 5.80806 5.83008 5.95604 5.99463 6.06942 6.11759 6.21489 6.25219 6.30304 6.35624 6.59065 6.82325 6.87970 7.07450 7.47166 7.63103 7.70441 8.32951 8.41620 9.52764 10.10588 10.45340 11.45415 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002468 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.931040 B =11344.780305 C =11599.576940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.070 3.930 5 O -0.265 6.265 6 C 0.373 3.627 7 N -0.548 5.548 8 C 0.163 3.837 9 C -0.220 4.220 10 C -0.007 4.007 11 C -0.208 4.208 12 C 0.564 3.436 13 O -0.518 6.518 14 N -0.717 5.717 15 C 0.147 3.853 16 H 0.090 0.910 17 C -0.160 4.160 18 C -0.135 4.135 19 C 0.154 3.846 20 N -0.734 5.734 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.398 0.602 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.080 18.675 -2.542 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.005 4.005 5 O -0.169 6.169 6 C 0.193 3.807 7 N -0.272 5.272 8 C 0.007 3.993 9 C -0.241 4.241 10 C -0.033 4.033 11 C -0.214 4.214 12 C 0.350 3.650 13 O -0.395 6.395 14 N -0.370 5.370 15 C 0.043 3.957 16 H 0.108 0.892 17 C -0.219 4.219 18 C -0.173 4.173 19 C 0.026 3.974 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.233 0.767 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.729 20.108 -3.436 27.693 hybrid contribution -0.627 -1.367 1.339 2.013 sum 18.102 18.740 -2.098 26.140 Atomic orbital electron populations 1.21827 0.94168 1.03169 1.01377 1.21138 0.97216 0.95557 0.97455 1.21768 1.01025 0.94918 1.02388 1.22820 0.99864 0.78847 0.99009 1.86511 1.71300 1.21314 1.37811 1.19822 0.87496 0.87632 0.85753 1.67491 1.16451 1.39975 1.03332 1.22646 0.92607 0.90738 0.93356 1.21945 1.04098 0.96651 1.01391 1.21722 0.91044 0.99985 0.90510 1.20095 1.09160 0.92579 0.99582 1.17726 0.79572 0.82082 0.85632 1.90815 1.53253 1.60201 1.35189 1.45998 1.57033 1.09289 1.24643 1.20971 0.92883 0.95678 0.86170 0.89231 1.22163 0.99837 1.01479 0.98409 1.22069 0.98509 0.96152 1.00582 1.20633 0.92058 0.90911 0.93759 1.42378 1.41757 1.04313 1.49383 1.19278 1.09830 0.93341 1.14428 0.91211 1.24748 1.00306 0.95366 1.00704 1.69673 1.44302 0.97567 1.46739 0.86119 0.81816 0.77211 0.81090 1.20558 1.21828 1.21866 0.92617 0.91189 0.92980 0.90066 0.92491 0.91789 0.92388 0.91603 0.91746 0.81955 0.83799 0.83600 0.76724 0.92594 0.91522 0.92362 0.90175 0.91402 0.96435 0.96380 0.78322 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.09 37.16 0.34 -1.17 16 2 C -0.10 -0.90 3.16 -90.62 -0.29 -1.18 16 3 C -0.14 -1.00 9.19 37.16 0.34 -0.65 16 4 C 0.07 0.75 4.69 37.16 0.17 0.93 16 5 O -0.27 -3.73 7.75 -39.75 -0.31 -4.04 16 6 C 0.37 5.00 7.51 -16.61 -0.12 4.88 16 7 N -0.55 -6.31 9.21 -12.98 -0.12 -6.43 16 8 C 0.16 1.40 11.17 -17.49 -0.20 1.21 16 9 C -0.22 -1.76 10.09 -39.50 -0.40 -2.16 16 10 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 11 C -0.21 -2.68 5.90 -104.69 -0.62 -3.30 16 12 C 0.56 8.33 7.74 -12.47 -0.10 8.23 16 13 O -0.52 -9.24 14.85 -16.48 -0.24 -9.49 16 14 N -0.72 -9.32 4.48 -54.85 -0.25 -9.57 16 15 C 0.15 2.03 2.57 -67.93 -0.17 1.85 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.16 -1.92 9.48 37.16 0.35 -1.56 16 18 C -0.13 -2.07 4.87 -26.73 -0.13 -2.20 16 19 C 0.15 3.08 6.15 -4.04 -0.02 3.06 16 20 N -0.73 -18.59 5.60 -59.91 -0.34 -18.93 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.15 1.11 6.52 -52.49 -0.34 0.77 16 41 H 0.40 4.39 6.70 -40.82 -0.27 4.12 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 412.77 15.07 6.22 6.22 Total: -1.00 -34.49 412.77 -9.23 -43.73 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.44 Total: 8.44 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.46 Total: 0.08 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.02 Total: -62.45 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.55 Total: -13.52 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.49 -9.23 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716187019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.924 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds