Wall clock time and date at job start Tue Mar 31 2020 19:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46933 * 2 1 4 4 C 1.53001 * 109.46914 * 119.99477 * 2 1 3 5 5 O 1.42900 * 109.47122 * 65.00663 * 4 2 1 6 6 C 1.35429 * 117.00112 * 179.97438 * 5 4 2 7 7 N 1.32234 * 119.79971 * 359.97438 * 6 5 4 8 8 C 1.31876 * 121.80128 * 180.02562 * 7 6 5 9 9 C 1.38356 * 121.18729 * 359.97438 * 8 7 6 10 10 C 1.38343 * 119.45522 * 359.74124 * 9 8 7 11 11 C 1.39992 * 118.34674 * 0.50298 * 10 9 8 12 12 C 1.47531 * 120.59398 * 179.78206 * 11 10 9 13 13 O 1.21591 * 119.99801 * 179.71576 * 12 11 10 14 14 N 1.34773 * 120.00037 * 359.71567 * 12 11 10 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 11 16 16 H 1.08993 * 109.47452 * 324.99846 * 15 14 12 17 17 C 1.53006 * 109.46998 * 84.99768 * 15 14 12 18 18 C 1.52997 * 109.47007 * 204.99627 * 15 14 12 19 19 C 1.53001 * 109.47328 * 65.00131 * 18 15 14 20 20 N 1.46496 * 109.47207 * 179.97438 * 19 18 15 21 21 C 1.36936 * 119.99586 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00829 * 0.02562 * 21 20 19 23 23 C 1.38819 * 119.99842 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99811 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00006 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47209 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47011 * 120.00506 * 25 23 21 28 28 H 1.48502 * 109.47221 * 240.00152 * 25 23 21 29 29 H 1.08999 * 109.47195 * 60.00556 * 1 2 3 30 30 H 1.09005 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47198 * 299.99888 * 1 2 3 32 32 H 1.08995 * 109.47225 * 239.99560 * 2 1 3 33 33 H 1.09008 * 109.47322 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47040 * 299.99804 * 3 2 1 35 35 H 1.08995 * 109.47525 * 59.99743 * 3 2 1 36 36 H 1.08993 * 109.47825 * 304.99986 * 4 2 1 37 37 H 1.09006 * 109.46923 * 184.99882 * 4 2 1 38 38 H 1.07998 * 119.40942 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.27594 * 179.97438 * 9 8 7 40 40 H 1.08002 * 120.82444 * 180.25186 * 10 9 8 41 41 H 0.97003 * 120.00095 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.46801 * 60.00058 * 17 15 14 43 43 H 1.09001 * 109.46998 * 179.97438 * 17 15 14 44 44 H 1.09000 * 109.47050 * 299.99945 * 17 15 14 45 45 H 1.09002 * 109.47196 * 184.99891 * 18 15 14 46 46 H 1.09001 * 109.47630 * 304.99986 * 18 15 14 47 47 H 1.09002 * 109.46786 * 300.00010 * 19 18 15 48 48 H 1.09001 * 109.46883 * 59.99398 * 19 18 15 49 49 H 0.96999 * 120.00300 * 0.02562 * 20 19 18 50 50 H 0.97004 * 119.99514 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0393 -2.8828 2.2294 7 7 2.7263 -2.3616 3.2319 8 6 3.1141 -3.0892 4.2612 9 6 2.8166 -4.4382 4.3376 10 6 2.0948 -5.0344 3.3190 11 6 1.6985 -4.2435 2.2341 12 6 0.9312 -4.8294 1.1185 13 8 0.5880 -4.1312 0.1840 14 7 0.6106 -6.1383 1.1352 15 6 -0.1509 -6.7201 0.0271 16 1 -0.8645 -5.9867 -0.3481 17 6 0.8080 -7.1197 -1.0963 18 6 -0.9032 -7.9579 0.5198 19 6 -1.9498 -7.5403 1.5547 20 7 -2.6705 -8.7254 2.0260 21 6 -3.6611 -8.5967 2.9627 22 1 -3.9114 -7.6216 3.3537 23 6 -4.3445 -9.7196 3.4089 24 7 -4.0399 -10.9080 2.9321 25 14 -5.6963 -9.5441 4.6861 26 1 -5.8432 -8.1139 5.0580 27 1 -6.9766 -10.0440 4.1237 28 1 -5.3433 -10.3349 5.8924 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 3.6739 -2.6237 5.0588 39 1 3.1418 -5.0202 5.1872 40 1 1.8469 -6.0849 3.3580 41 1 0.8847 -6.6953 1.8805 42 1 1.5216 -7.8533 -0.7211 43 1 0.2415 -7.5530 -1.9206 44 1 1.3440 -6.2379 -1.4473 45 1 -1.3980 -8.4415 -0.3225 46 1 -0.1989 -8.6537 0.9757 47 1 -1.4549 -7.0567 2.3970 48 1 -2.6541 -6.8445 1.0988 49 1 -2.4456 -9.6013 1.6752 50 1 -4.5172 -11.6927 3.2442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716187019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:20 Heat of formation + Delta-G solvation = -67.419593 kcal Electronic energy + Delta-G solvation = -28941.233930 eV Core-core repulsion = 24967.689758 eV Total energy + Delta-G solvation = -3973.544172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97031 -40.43314 -39.24176 -37.80778 -36.29172 -36.03838 -34.21966 -33.32629 -32.03690 -31.31575 -29.41243 -28.09135 -27.59482 -26.06154 -25.60051 -24.05142 -23.30225 -22.33945 -21.59719 -21.15052 -19.63757 -19.23622 -18.51185 -18.07534 -17.38587 -16.98817 -16.69451 -16.10227 -16.02447 -15.66920 -15.63393 -15.47377 -15.20522 -15.08668 -14.93825 -14.42574 -14.28012 -14.13516 -13.94812 -13.57683 -13.54328 -13.33205 -13.10308 -13.04214 -12.91511 -12.87618 -12.39036 -12.34860 -12.23681 -12.08348 -12.00184 -11.93176 -11.72436 -11.64415 -11.61471 -11.16608 -11.03589 -10.96635 -10.60749 -10.10087 -9.53337 -9.01682 -7.97133 -5.25977 -0.34366 0.23269 1.46516 1.47363 1.57459 1.88907 1.96730 2.13530 2.54397 2.80850 3.24968 3.36481 3.58870 3.70588 3.76181 3.81959 3.87852 3.96966 4.06305 4.10003 4.16870 4.24408 4.37928 4.45408 4.50607 4.53557 4.56577 4.63157 4.65203 4.75117 4.76875 4.84987 4.89086 4.92698 4.97122 5.00539 5.08882 5.15733 5.21547 5.26704 5.30690 5.33358 5.35805 5.44135 5.47745 5.57148 6.23597 6.25776 6.52988 6.74499 7.24951 7.32343 8.07050 8.31873 9.26254 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002468 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.931040 B =11344.780305 C =11599.576940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.137 4.137 4 C 0.071 3.929 5 O -0.292 6.292 6 C 0.350 3.650 7 N -0.560 5.560 8 C 0.164 3.836 9 C -0.208 4.208 10 C -0.007 4.007 11 C -0.236 4.236 12 C 0.561 3.439 13 O -0.560 6.560 14 N -0.709 5.709 15 C 0.154 3.846 16 H 0.066 0.934 17 C -0.152 4.152 18 C -0.117 4.117 19 C 0.154 3.846 20 N -0.744 5.744 21 C -0.247 4.247 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.972 3.028 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.289 1.289 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.202 0.798 39 H 0.182 0.818 40 H 0.166 0.834 41 H 0.409 0.591 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.023 0.977 48 H 0.004 0.996 49 H 0.376 0.624 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.496 19.104 -0.800 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.194 4.194 4 C -0.004 4.004 5 O -0.197 6.197 6 C 0.170 3.830 7 N -0.285 5.285 8 C 0.007 3.993 9 C -0.228 4.228 10 C -0.033 4.033 11 C -0.242 4.242 12 C 0.348 3.652 13 O -0.439 6.439 14 N -0.362 5.362 15 C 0.049 3.951 16 H 0.085 0.915 17 C -0.210 4.210 18 C -0.156 4.156 19 C 0.028 3.972 20 N -0.387 5.387 21 C -0.378 4.378 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.194 1.194 27 H -0.220 1.220 28 H -0.216 1.216 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.199 0.801 40 H 0.183 0.817 41 H 0.246 0.754 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.041 0.959 48 H 0.022 0.978 49 H 0.209 0.791 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.168 20.550 -1.682 28.843 hybrid contribution -1.008 -1.464 0.861 1.975 sum 19.160 19.087 -0.821 27.057 Atomic orbital electron populations 1.21775 0.94924 1.01124 1.02299 1.21167 0.96553 0.97060 0.96446 1.21729 1.01576 0.92891 1.03199 1.22929 1.00130 0.77920 0.99470 1.86487 1.71951 1.22539 1.38772 1.20065 0.88583 0.87960 0.86359 1.67552 1.16620 1.40630 1.03714 1.23419 0.91560 0.91268 0.93033 1.22378 1.02262 0.96622 1.01501 1.22036 0.90676 1.00706 0.89840 1.20086 1.10781 0.93024 1.00313 1.18100 0.79205 0.82131 0.85733 1.90786 1.55061 1.61155 1.36923 1.45906 1.56463 1.09044 1.24781 1.20816 0.93002 0.94275 0.86986 0.91549 1.22073 0.99600 1.01410 0.97898 1.21896 0.97479 0.96901 0.99287 1.20746 0.92484 0.89054 0.94935 1.42552 1.41764 1.05416 1.49006 1.19608 1.10286 0.93324 1.14618 0.91248 1.25546 1.02812 0.95158 1.03033 1.69810 1.45551 0.98116 1.48209 0.85100 0.78715 0.77569 0.78531 1.19436 1.21990 1.21559 0.91342 0.94626 0.92347 0.91249 0.91576 0.90796 0.91717 0.91702 0.91258 0.78150 0.80100 0.81656 0.75420 0.90926 0.90441 0.93464 0.89998 0.89929 0.95883 0.97839 0.79140 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.09 71.98 0.65 -2.43 16 2 C -0.09 -1.83 3.16 -10.79 -0.03 -1.86 16 3 C -0.14 -1.77 9.19 71.98 0.66 -1.11 16 4 C 0.07 1.58 4.69 71.98 0.34 1.92 16 5 O -0.29 -8.74 7.75 -66.43 -0.51 -9.25 16 6 C 0.35 9.58 7.51 85.13 0.64 10.22 16 7 N -0.56 -12.42 9.21 -308.01 -2.84 -15.25 16 8 C 0.16 2.35 11.17 84.71 0.95 3.30 16 9 C -0.21 -2.63 10.09 22.32 0.23 -2.41 16 10 C -0.01 -0.12 9.64 22.72 0.22 0.10 16 11 C -0.24 -6.11 5.90 -19.91 -0.12 -6.23 16 12 C 0.56 17.10 7.74 86.69 0.67 17.77 16 13 O -0.56 -21.26 14.85 16.81 0.25 -21.01 16 14 N -0.71 -18.30 4.48 -445.71 -2.00 -20.30 16 15 C 0.15 4.23 2.57 44.99 0.12 4.34 16 16 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 17 C -0.15 -3.49 9.48 71.98 0.68 -2.81 16 18 C -0.12 -3.52 4.87 30.59 0.15 -3.37 16 19 C 0.15 6.17 6.15 86.38 0.53 6.70 16 20 N -0.74 -37.70 5.60 -343.45 -1.92 -39.63 16 21 C -0.25 -13.90 9.99 84.04 0.84 -13.06 16 22 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 24 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 25 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 0.99 7.82 -2.38 -0.02 0.98 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.07 1.42 8.10 -2.38 -0.02 1.40 16 38 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 40 H 0.17 2.11 6.52 -2.91 -0.02 2.09 16 41 H 0.41 8.52 6.70 -92.71 -0.62 7.89 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 48 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.38 19.88 7.67 -92.71 -0.71 19.17 16 50 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -76.58 412.77 1.88 -74.71 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.40 Total: 33.51 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.99 Total: 7.34 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -6.48 Total: -133.47 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.27 Total: -30.26 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.58 1.88 -74.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716187019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.286 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds