Wall clock time and date at job start Tue Mar 31 2020 19:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 N 1.46503 * 109.47008 * 119.99801 * 2 1 3 5 5 C 1.34773 * 119.99980 * 274.99859 * 4 2 1 6 6 O 1.21649 * 120.00144 * 354.84804 * 5 4 2 7 7 C 1.47087 * 119.99731 * 174.85104 * 5 4 2 8 8 C 1.39335 * 120.58336 * 185.79089 * 7 5 4 9 9 C 1.39478 * 118.95955 * 180.02562 * 8 7 5 10 10 C 1.35756 * 120.12756 * 359.97438 * 9 8 7 11 11 N 1.35437 * 121.23444 * 0.02562 * 10 9 8 12 12 C 1.46493 * 119.47252 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47433 * 0.02562 * 12 11 10 14 14 C 1.53005 * 109.46991 * 120.00233 * 12 11 10 15 15 C 1.53003 * 109.47101 * 239.99869 * 12 11 10 16 16 C 1.34659 * 121.05541 * 359.70893 * 11 10 9 17 17 O 1.21878 * 120.10350 * 180.28444 * 16 11 10 18 18 C 1.52999 * 109.47181 * 239.99894 * 2 1 3 19 19 H 1.09008 * 109.46961 * 299.99986 * 18 2 1 20 20 C 1.52999 * 109.47196 * 180.02562 * 18 2 1 21 21 N 1.46495 * 109.47406 * 59.99949 * 18 2 1 22 22 C 1.36934 * 120.00482 * 205.00051 * 21 18 2 23 23 H 1.07998 * 119.99878 * 0.02562 * 22 21 18 24 24 C 1.38813 * 120.00213 * 179.97438 * 22 21 18 25 25 N 1.31616 * 119.99721 * 0.28038 * 24 22 21 26 26 Si 1.86799 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47147 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47143 * 120.00147 * 26 24 22 29 29 H 1.48495 * 109.47721 * 240.00778 * 26 24 22 30 30 H 1.09003 * 109.47019 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.46976 * 60.00131 * 1 2 3 32 32 H 1.09002 * 109.47469 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99980 * 94.99913 * 4 2 1 34 34 H 1.08006 * 120.52389 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.93823 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.38577 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.47179 * 59.99683 * 13 12 11 38 38 H 1.08992 * 109.47390 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46872 * 300.00183 * 13 12 11 40 40 H 1.08992 * 109.47445 * 60.00157 * 14 12 11 41 41 H 1.09000 * 109.46597 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.46863 * 299.99275 * 14 12 11 43 43 H 1.09001 * 109.46887 * 60.00012 * 15 12 11 44 44 H 1.09000 * 109.46809 * 179.97438 * 15 12 11 45 45 H 1.09000 * 109.47206 * 300.00193 * 15 12 11 46 46 H 1.08998 * 109.47274 * 59.99782 * 20 18 2 47 47 H 1.09003 * 109.47035 * 180.02562 * 20 18 2 48 48 H 1.09002 * 109.47154 * 299.99923 * 20 18 2 49 49 H 0.97002 * 119.99780 * 25.00184 * 21 18 2 50 50 H 0.97000 * 120.00692 * 359.72217 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.9480 1.1814 2.3906 7 6 2.5282 -0.7349 3.5837 8 6 2.5482 -0.0773 4.8119 9 6 2.9154 -0.7895 5.9535 10 6 3.2462 -2.1029 5.8602 11 7 3.2290 -2.7486 4.6697 12 6 3.5925 -4.1666 4.6136 13 6 3.9418 -4.6596 6.0192 14 6 2.4127 -4.9743 4.0688 15 6 4.8019 -4.3470 3.6940 16 6 2.8769 -2.1096 3.5379 17 8 2.8625 -2.7089 2.4767 18 6 2.0400 -0.7213 -1.2492 19 1 1.6766 -1.7490 -1.2492 20 6 3.5700 -0.7218 -1.2489 21 7 1.5517 -0.0308 -2.4454 22 6 1.4209 -0.7139 -3.6250 23 1 1.6774 -1.7618 -3.6733 24 6 0.9577 -0.0596 -4.7583 25 7 0.6495 1.2186 -4.7004 26 14 0.7800 -0.9913 -6.3675 27 1 1.1949 -2.4035 -6.1703 28 1 -0.6369 -0.9494 -6.8099 29 1 1.6403 -0.3622 -7.4015 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 2.2835 0.9677 4.8790 35 1 2.9368 -0.2953 6.9135 36 1 3.5283 -2.6430 6.7518 37 1 3.0799 -4.5312 6.6739 38 1 4.2127 -5.7145 5.9773 39 1 4.7821 -4.0842 6.4076 40 1 2.1634 -4.6233 3.0675 41 1 2.6831 -6.0294 4.0275 42 1 1.5511 -4.8458 4.7239 43 1 5.6424 -3.7715 4.0821 44 1 5.0727 -5.4020 3.6526 45 1 4.5527 -3.9959 2.6927 46 1 3.9329 -1.2359 -0.3589 47 1 3.9333 -1.2353 -2.1391 48 1 3.9337 0.3057 -1.2487 49 1 1.3210 0.9104 -2.4019 50 1 0.7421 1.7026 -3.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717428924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:07 Heat of formation + Delta-G solvation = -21.710833 kcal Electronic energy + Delta-G solvation = -30232.987518 eV Core-core repulsion = 26261.425426 eV Total energy + Delta-G solvation = -3971.562092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19508 -39.45652 -37.52358 -37.08476 -36.37691 -33.88986 -32.53074 -31.62993 -30.52516 -29.32668 -28.27009 -27.94914 -27.80099 -24.99768 -23.89598 -23.68802 -22.61253 -21.22502 -20.12974 -19.87268 -18.12623 -17.50682 -17.41685 -17.03590 -16.26054 -16.14656 -15.41532 -14.98015 -14.78821 -14.63176 -14.31310 -14.18684 -13.90919 -13.62849 -13.45507 -13.18630 -13.07264 -12.95038 -12.70666 -12.56162 -12.50539 -12.50053 -12.39928 -11.98333 -11.75899 -11.66609 -11.62604 -11.56559 -11.10505 -10.79053 -10.57630 -10.36928 -10.32891 -10.07093 -9.98734 -9.85090 -9.64591 -9.10509 -8.87894 -8.55971 -8.28775 -6.94096 -6.00931 -3.00355 0.16347 1.48666 2.06378 2.76437 3.55436 3.58669 3.64391 3.70108 3.73701 3.90441 4.02790 4.23077 4.34345 4.48087 4.59218 4.75021 4.78828 4.86281 4.93905 4.95395 5.17960 5.22768 5.23506 5.36491 5.39130 5.42347 5.57266 5.64044 5.69224 5.73867 5.82614 5.85522 5.88827 5.89822 5.96875 6.11583 6.20237 6.36303 6.48991 6.51930 6.63762 6.64747 6.77518 6.88110 7.07738 7.15202 7.60088 7.91232 8.09835 8.67747 8.84713 9.31886 10.18035 10.33718 11.47724 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002794 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.095983 B =10017.852130 C =11073.572566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 H 0.082 0.918 4 N -0.702 5.702 5 C 0.572 3.428 6 O -0.556 6.556 7 C -0.269 4.269 8 C 0.053 3.947 9 C -0.241 4.241 10 C 0.148 3.852 11 N -0.481 5.481 12 C 0.144 3.856 13 C -0.164 4.164 14 C -0.166 4.166 15 C -0.165 4.165 16 C 0.532 3.468 17 O -0.533 6.533 18 C 0.176 3.824 19 H 0.051 0.949 20 C -0.162 4.162 21 N -0.730 5.730 22 C -0.325 4.325 23 H 0.065 0.935 24 C -0.047 4.047 25 N -0.946 5.946 26 Si 1.085 2.915 27 H -0.295 1.295 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.413 0.587 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.367 0.633 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.551 -12.697 30.094 33.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.100 0.900 4 N -0.361 5.361 5 C 0.359 3.641 6 O -0.437 6.437 7 C -0.276 4.276 8 C 0.030 3.970 9 C -0.264 4.264 10 C 0.018 3.982 11 N -0.190 5.190 12 C 0.062 3.938 13 C -0.222 4.222 14 C -0.223 4.223 15 C -0.223 4.223 16 C 0.334 3.666 17 O -0.415 6.415 18 C 0.066 3.934 19 H 0.069 0.931 20 C -0.222 4.222 21 N -0.373 5.373 22 C -0.456 4.456 23 H 0.083 0.917 24 C -0.244 4.244 25 N -0.592 5.592 26 Si 0.917 3.083 27 H -0.222 1.222 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.259 0.741 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.187 0.813 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.201 0.799 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.008 -12.499 27.726 31.210 hybrid contribution 0.586 -0.243 1.866 1.971 sum 7.594 -12.742 29.592 33.102 Atomic orbital electron populations 1.22030 0.95190 1.01717 1.01862 1.21302 0.94205 0.97577 0.84256 0.90033 1.46553 1.64950 1.15997 1.08623 1.17401 0.77429 0.86384 0.82918 1.90769 1.52965 1.13988 1.86000 1.21176 1.16237 0.93772 0.96401 1.22040 0.84284 1.00463 0.90217 1.20687 1.11771 0.93601 1.00314 1.22325 0.92333 0.93877 0.89664 1.45718 1.53615 1.12004 1.07638 1.21077 0.97239 0.77878 0.97608 1.22314 1.02289 1.03273 0.94297 1.22258 0.96137 0.99911 1.04009 1.22250 0.95368 1.02971 1.01686 1.16977 0.79033 0.87455 0.83103 1.90590 1.55865 1.67541 1.27503 1.20283 0.92087 0.95501 0.85543 0.93145 1.22389 0.98991 1.00809 0.99989 1.42316 1.79370 1.09782 1.05875 1.20076 1.41538 0.95092 0.88911 0.91722 1.25731 0.99620 0.97538 1.01513 1.70793 1.51638 1.08201 1.28553 0.83147 0.76305 0.73673 0.75181 1.22199 1.22117 1.22124 0.93536 0.90632 0.93060 0.74135 0.83326 0.82978 0.81298 0.91216 0.89712 0.91219 0.89147 0.90690 0.92338 0.92323 0.90677 0.89203 0.94195 0.92781 0.93724 0.79897 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.33 37.16 0.35 -2.61 16 2 C 0.13 2.66 2.25 -67.93 -0.15 2.50 16 3 H 0.08 1.78 7.51 -51.93 -0.39 1.39 16 4 N -0.70 -12.68 4.29 -54.99 -0.24 -12.92 16 5 C 0.57 10.08 7.70 -12.67 -0.10 9.99 16 6 O -0.56 -11.25 16.03 5.23 0.08 -11.17 16 7 C -0.27 -3.63 5.92 -104.50 -0.62 -4.25 16 8 C 0.05 0.53 9.70 -38.71 -0.38 0.15 16 9 C -0.24 -1.44 9.99 -40.01 -0.40 -1.84 16 10 C 0.15 0.79 9.58 -16.85 -0.16 0.63 16 11 N -0.48 -3.95 2.53 -105.39 -0.27 -4.21 16 12 C 0.14 0.94 1.02 -131.82 -0.13 0.81 16 13 C -0.16 -0.47 7.09 37.16 0.26 -0.21 16 14 C -0.17 -1.22 8.39 37.16 0.31 -0.91 16 15 C -0.17 -1.23 8.40 37.16 0.31 -0.92 16 16 C 0.53 6.57 6.84 -14.91 -0.10 6.47 16 17 O -0.53 -7.72 9.83 5.03 0.05 -7.68 16 18 C 0.18 3.89 2.52 -67.93 -0.17 3.72 16 19 H 0.05 1.15 8.08 -51.92 -0.42 0.73 16 20 C -0.16 -3.36 9.33 37.16 0.35 -3.02 16 21 N -0.73 -19.14 4.43 -53.43 -0.24 -19.37 16 22 C -0.33 -9.41 9.93 -15.06 -0.15 -9.56 16 23 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 25 N -0.95 -30.09 13.70 55.49 0.76 -29.33 16 26 Si 1.09 26.88 29.92 -169.99 -5.09 21.79 16 27 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.62 7.45 -51.93 -0.39 1.23 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.41 7.28 4.99 -40.82 -0.20 7.08 16 34 H 0.15 1.43 7.71 -52.48 -0.40 1.03 16 35 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.17 0.24 5.55 -52.49 -0.29 -0.05 16 37 H 0.07 0.13 7.41 -51.93 -0.38 -0.25 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.13 7.41 -51.93 -0.38 -0.25 16 40 H 0.09 0.95 6.09 -51.93 -0.32 0.63 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.95 6.14 -51.93 -0.32 0.64 16 46 H 0.04 0.74 7.44 -51.93 -0.39 0.36 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.37 9.99 6.42 -40.82 -0.26 9.73 16 50 H 0.26 8.07 6.77 -40.82 -0.28 7.79 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -36.38 393.65 -7.74 -44.11 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.86 Total: 13.37 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.88 Total: -0.53 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.02 Total: -65.83 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.13 Total: -18.84 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -5.09 Total: 21.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.38 -7.74 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717428924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.403 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds