Wall clock time and date at job start Tue Mar 31 2020 19:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 N 1.46503 * 109.47008 * 119.99801 * 2 1 3 5 5 C 1.34773 * 119.99980 * 274.99859 * 4 2 1 6 6 O 1.21649 * 120.00144 * 354.84804 * 5 4 2 7 7 C 1.47087 * 119.99731 * 174.85104 * 5 4 2 8 8 C 1.39335 * 120.58336 * 185.79089 * 7 5 4 9 9 C 1.39478 * 118.95955 * 180.02562 * 8 7 5 10 10 C 1.35756 * 120.12756 * 359.97438 * 9 8 7 11 11 N 1.35437 * 121.23444 * 0.02562 * 10 9 8 12 12 C 1.46493 * 119.47252 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47433 * 0.02562 * 12 11 10 14 14 C 1.53005 * 109.46991 * 120.00233 * 12 11 10 15 15 C 1.53003 * 109.47101 * 239.99869 * 12 11 10 16 16 C 1.34659 * 121.05541 * 359.70893 * 11 10 9 17 17 O 1.21878 * 120.10350 * 180.28444 * 16 11 10 18 18 C 1.52999 * 109.47181 * 239.99894 * 2 1 3 19 19 H 1.09008 * 109.46961 * 299.99986 * 18 2 1 20 20 C 1.52999 * 109.47196 * 180.02562 * 18 2 1 21 21 N 1.46495 * 109.47406 * 59.99949 * 18 2 1 22 22 C 1.36934 * 120.00482 * 205.00051 * 21 18 2 23 23 H 1.07998 * 119.99878 * 0.02562 * 22 21 18 24 24 C 1.38813 * 120.00213 * 179.97438 * 22 21 18 25 25 N 1.31616 * 119.99721 * 0.28038 * 24 22 21 26 26 Si 1.86799 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47147 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47143 * 120.00147 * 26 24 22 29 29 H 1.48495 * 109.47721 * 240.00778 * 26 24 22 30 30 H 1.09003 * 109.47019 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.46976 * 60.00131 * 1 2 3 32 32 H 1.09002 * 109.47469 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99980 * 94.99913 * 4 2 1 34 34 H 1.08006 * 120.52389 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.93823 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.38577 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.47179 * 59.99683 * 13 12 11 38 38 H 1.08992 * 109.47390 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46872 * 300.00183 * 13 12 11 40 40 H 1.08992 * 109.47445 * 60.00157 * 14 12 11 41 41 H 1.09000 * 109.46597 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.46863 * 299.99275 * 14 12 11 43 43 H 1.09001 * 109.46887 * 60.00012 * 15 12 11 44 44 H 1.09000 * 109.46809 * 179.97438 * 15 12 11 45 45 H 1.09000 * 109.47206 * 300.00193 * 15 12 11 46 46 H 1.08998 * 109.47274 * 59.99782 * 20 18 2 47 47 H 1.09003 * 109.47035 * 180.02562 * 20 18 2 48 48 H 1.09002 * 109.47154 * 299.99923 * 20 18 2 49 49 H 0.97002 * 119.99780 * 25.00184 * 21 18 2 50 50 H 0.97000 * 120.00692 * 359.72217 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.9480 1.1814 2.3906 7 6 2.5282 -0.7349 3.5837 8 6 2.5482 -0.0773 4.8119 9 6 2.9154 -0.7895 5.9535 10 6 3.2462 -2.1029 5.8602 11 7 3.2290 -2.7486 4.6697 12 6 3.5925 -4.1666 4.6136 13 6 3.9418 -4.6596 6.0192 14 6 2.4127 -4.9743 4.0688 15 6 4.8019 -4.3470 3.6940 16 6 2.8769 -2.1096 3.5379 17 8 2.8625 -2.7089 2.4767 18 6 2.0400 -0.7213 -1.2492 19 1 1.6766 -1.7490 -1.2492 20 6 3.5700 -0.7218 -1.2489 21 7 1.5517 -0.0308 -2.4454 22 6 1.4209 -0.7139 -3.6250 23 1 1.6774 -1.7618 -3.6733 24 6 0.9577 -0.0596 -4.7583 25 7 0.6495 1.2186 -4.7004 26 14 0.7800 -0.9913 -6.3675 27 1 1.1949 -2.4035 -6.1703 28 1 -0.6369 -0.9494 -6.8099 29 1 1.6403 -0.3622 -7.4015 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 2.2835 0.9677 4.8790 35 1 2.9368 -0.2953 6.9135 36 1 3.5283 -2.6430 6.7518 37 1 3.0799 -4.5312 6.6739 38 1 4.2127 -5.7145 5.9773 39 1 4.7821 -4.0842 6.4076 40 1 2.1634 -4.6233 3.0675 41 1 2.6831 -6.0294 4.0275 42 1 1.5511 -4.8458 4.7239 43 1 5.6424 -3.7715 4.0821 44 1 5.0727 -5.4020 3.6526 45 1 4.5527 -3.9959 2.6927 46 1 3.9329 -1.2359 -0.3589 47 1 3.9333 -1.2353 -2.1391 48 1 3.9337 0.3057 -1.2487 49 1 1.3210 0.9104 -2.4019 50 1 0.7421 1.7026 -3.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717428924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:07 Heat of formation + Delta-G solvation = -46.407229 kcal Electronic energy + Delta-G solvation = -30234.058434 eV Core-core repulsion = 26261.425426 eV Total energy + Delta-G solvation = -3972.633008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92721 -40.79070 -38.52059 -38.36990 -37.35983 -35.78626 -33.60485 -33.14118 -31.49279 -30.71899 -30.02703 -28.65337 -28.36835 -25.88511 -25.84850 -24.76075 -24.07970 -22.27869 -21.63277 -21.03034 -19.53865 -19.03525 -18.17657 -18.10840 -17.10645 -17.02265 -16.84318 -16.49290 -15.86571 -15.76199 -15.43515 -15.32251 -15.18945 -15.16474 -14.82350 -14.69810 -14.31740 -13.89039 -13.63533 -13.60177 -13.35094 -13.16140 -13.10728 -13.07542 -12.93985 -12.79908 -12.65590 -12.59307 -12.51898 -12.33572 -12.17799 -12.13252 -11.86402 -11.73536 -11.33464 -11.14078 -11.07512 -11.01727 -10.72682 -10.08089 -9.16893 -9.07659 -8.39506 -5.33816 -0.57666 0.78842 1.41580 1.57151 1.69483 1.71356 1.81210 2.26416 2.69719 2.72904 3.36975 3.40265 3.62321 3.63681 3.76337 3.78823 3.83443 3.88106 3.92626 3.97269 4.07113 4.18673 4.22470 4.40234 4.52749 4.61350 4.63458 4.63905 4.73601 4.74801 4.77366 4.83676 4.86394 4.86575 4.92603 5.01058 5.05485 5.11660 5.18737 5.22951 5.28816 5.29261 5.30323 5.49201 5.56386 5.62241 5.97370 6.48038 6.58683 6.89419 7.05838 7.32129 7.95422 8.08874 9.12187 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002794 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.095983 B =10017.852130 C =11073.572566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.144 3.856 3 H 0.060 0.940 4 N -0.702 5.702 5 C 0.567 3.433 6 O -0.596 6.596 7 C -0.326 4.326 8 C 0.073 3.927 9 C -0.240 4.240 10 C 0.176 3.824 11 N -0.477 5.477 12 C 0.140 3.860 13 C -0.161 4.161 14 C -0.165 4.165 15 C -0.165 4.165 16 C 0.525 3.475 17 O -0.568 6.568 18 C 0.178 3.822 19 H 0.046 0.954 20 C -0.148 4.148 21 N -0.739 5.739 22 C -0.325 4.325 23 H 0.066 0.934 24 C -0.105 4.105 25 N -0.975 5.975 26 Si 1.134 2.866 27 H -0.272 1.272 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.415 0.585 34 H 0.146 0.854 35 H 0.197 0.803 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.036 0.964 49 H 0.359 0.641 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.781 -15.223 34.213 38.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.038 3.962 3 H 0.079 0.921 4 N -0.362 5.362 5 C 0.357 3.643 6 O -0.480 6.480 7 C -0.334 4.334 8 C 0.049 3.951 9 C -0.261 4.261 10 C 0.045 3.955 11 N -0.183 5.183 12 C 0.059 3.941 13 C -0.218 4.218 14 C -0.222 4.222 15 C -0.222 4.222 16 C 0.329 3.671 17 O -0.453 6.453 18 C 0.069 3.931 19 H 0.064 0.936 20 C -0.208 4.208 21 N -0.382 5.382 22 C -0.456 4.456 23 H 0.084 0.916 24 C -0.296 4.296 25 N -0.624 5.624 26 Si 0.959 3.041 27 H -0.197 1.197 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.262 0.738 34 H 0.164 0.836 35 H 0.214 0.786 36 H 0.241 0.759 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.192 0.808 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.271 -15.078 31.923 36.260 hybrid contribution 0.272 0.475 0.842 1.004 sum 8.543 -14.603 32.765 36.875 Atomic orbital electron populations 1.21897 0.94983 1.01725 1.01054 1.20924 0.94275 0.96332 0.84671 0.92145 1.46519 1.65467 1.15983 1.08273 1.18078 0.76211 0.86160 0.83815 1.90722 1.54958 1.15611 1.86710 1.20821 1.21986 0.94922 0.95626 1.22309 0.81946 1.00545 0.90307 1.21165 1.10760 0.93793 1.00407 1.23313 0.88391 0.93878 0.89877 1.45818 1.52138 1.12864 1.07500 1.21312 0.96139 0.76600 1.00095 1.22360 1.03821 1.04262 0.91316 1.22230 0.97000 1.01045 1.01971 1.22224 0.96079 1.04025 0.99888 1.16870 0.79228 0.87115 0.83893 1.90552 1.57649 1.68053 1.29050 1.20363 0.92783 0.94941 0.85043 0.93571 1.22209 0.97726 1.00415 1.00460 1.42444 1.79653 1.09501 1.06588 1.20378 1.40193 0.95241 0.89816 0.91552 1.27231 0.99570 0.97606 1.05151 1.70914 1.53975 1.09428 1.28037 0.82530 0.76394 0.73735 0.71406 1.19665 1.21686 1.21811 0.92921 0.92694 0.92541 0.73803 0.83649 0.78567 0.75866 0.89247 0.88423 0.89276 0.93055 0.88947 0.91724 0.91749 0.88919 0.93138 0.92189 0.93682 0.94496 0.80830 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.33 71.98 0.67 -5.10 16 2 C 0.14 6.18 2.25 44.99 0.10 6.28 16 3 H 0.06 2.84 7.51 -2.39 -0.02 2.83 16 4 N -0.70 -26.97 4.29 -446.12 -1.92 -28.88 16 5 C 0.57 21.16 7.70 86.57 0.67 21.82 16 6 O -0.60 -25.57 16.03 -4.19 -0.07 -25.64 16 7 C -0.33 -8.98 5.92 -19.79 -0.12 -9.09 16 8 C 0.07 1.34 9.70 22.83 0.22 1.56 16 9 C -0.24 -1.76 9.99 21.99 0.22 -1.54 16 10 C 0.18 0.95 9.58 83.56 0.80 1.75 16 11 N -0.48 -6.55 2.53 -605.55 -1.53 -8.09 16 12 C 0.14 1.42 1.02 3.61 0.00 1.42 16 13 C -0.16 0.00 7.09 71.98 0.51 0.51 16 14 C -0.16 -2.19 8.39 71.98 0.60 -1.59 16 15 C -0.16 -2.21 8.40 71.98 0.60 -1.60 16 16 C 0.53 12.98 6.84 85.16 0.58 13.56 16 17 O -0.57 -17.39 9.83 -4.92 -0.05 -17.43 16 18 C 0.18 8.22 2.52 44.99 0.11 8.33 16 19 H 0.05 2.18 8.08 -2.38 -0.02 2.16 16 20 C -0.15 -6.40 9.33 71.98 0.67 -5.72 16 21 N -0.74 -40.44 4.43 -322.95 -1.43 -41.87 16 22 C -0.33 -19.24 9.93 84.03 0.83 -18.41 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 24 C -0.10 -6.35 5.50 84.86 0.47 -5.88 16 25 N -0.98 -63.84 13.70 21.65 0.30 -63.54 16 26 Si 1.13 54.51 29.92 68.60 2.05 56.56 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.05 2.50 7.45 -2.39 -0.02 2.48 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.42 15.59 4.99 -92.77 -0.46 15.13 16 34 H 0.15 2.71 7.71 -2.91 -0.02 2.69 16 35 H 0.20 -0.21 8.06 -2.91 -0.02 -0.24 16 36 H 0.23 -1.18 5.55 -2.91 -0.02 -1.19 16 37 H 0.09 -0.28 7.41 -2.39 -0.02 -0.30 16 38 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.09 -0.28 7.41 -2.39 -0.02 -0.29 16 40 H 0.05 1.12 6.09 -2.39 -0.01 1.11 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 1.11 6.14 -2.39 -0.01 1.10 16 46 H 0.06 2.32 7.44 -2.39 -0.02 2.31 16 47 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.36 20.69 6.42 -92.71 -0.59 20.09 16 50 H 0.24 16.04 6.77 -92.71 -0.63 15.41 16 Total: -1.00 -86.17 393.65 4.35 -81.82 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: 0.04 Total: 40.77 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.95 Total: 6.30 kcal Atomic # 7 Polarization: -137.79 SS G_CDS: -4.58 Total: -142.38 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.12 Total: -43.07 kcal Atomic # 14 Polarization: 54.51 SS G_CDS: 2.05 Total: 56.56 kcal Total: -86.17 4.35 -81.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717428924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.415 kcal (2) G-P(sol) polarization free energy of solvation -86.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds