Wall clock time and date at job start Tue Mar 31 2020 19:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47026 * 2 1 4 4 N 1.46505 * 109.47252 * 240.00123 * 2 1 3 5 5 C 1.36942 * 119.99986 * 84.99680 * 4 2 1 6 6 H 1.08003 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99771 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99776 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47337 * 90.00068 * 9 7 5 11 11 H 1.48504 * 109.47355 * 210.00170 * 9 7 5 12 12 H 1.48500 * 109.47270 * 329.99845 * 9 7 5 13 13 C 1.53000 * 109.47190 * 120.00339 * 2 1 3 14 14 H 1.09003 * 109.46821 * 185.00416 * 13 2 1 15 15 C 1.52990 * 109.47277 * 64.99803 * 13 2 1 16 16 N 1.46502 * 109.46979 * 304.99782 * 13 2 1 17 17 C 1.34774 * 120.00035 * 205.00502 * 16 13 2 18 18 O 1.21643 * 120.00230 * 5.11085 * 17 16 13 19 19 C 1.47080 * 119.99744 * 185.11901 * 17 16 13 20 20 C 1.39344 * 120.58644 * 174.14878 * 19 17 16 21 21 C 1.39469 * 118.95814 * 180.22482 * 20 19 17 22 22 C 1.35760 * 120.13039 * 359.51067 * 21 20 19 23 23 N 1.35434 * 121.23319 * 0.47703 * 22 21 20 24 24 C 1.46494 * 119.47056 * 179.75865 * 23 22 21 25 25 C 1.53005 * 109.46987 * 240.01970 * 24 23 22 26 26 C 1.52998 * 109.47574 * 0.02562 * 24 23 22 27 27 C 1.52995 * 109.47160 * 120.02355 * 24 23 22 28 28 C 1.34650 * 121.05302 * 359.78053 * 23 22 21 29 29 O 1.21891 * 120.09891 * 179.97438 * 28 23 22 30 30 H 1.08994 * 109.47138 * 299.99753 * 1 2 3 31 31 H 1.09002 * 109.46877 * 60.00113 * 1 2 3 32 32 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00083 * 265.00115 * 4 2 1 34 34 H 0.96997 * 120.00493 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47188 * 60.00625 * 15 13 2 36 36 H 1.09001 * 109.47266 * 179.97438 * 15 13 2 37 37 H 1.09003 * 109.47697 * 300.00077 * 15 13 2 38 38 H 0.97004 * 119.99877 * 25.00149 * 16 13 2 39 39 H 1.07995 * 120.51738 * 359.95093 * 20 19 17 40 40 H 1.08000 * 119.93416 * 179.72400 * 21 20 19 41 41 H 1.08000 * 119.37993 * 180.23739 * 22 21 20 42 42 H 1.09004 * 109.46815 * 60.00067 * 25 24 23 43 43 H 1.09002 * 109.47129 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47326 * 300.00306 * 25 24 23 45 45 H 1.09009 * 109.46735 * 59.99983 * 26 24 23 46 46 H 1.08992 * 109.47603 * 179.97438 * 26 24 23 47 47 H 1.08996 * 109.47358 * 300.00801 * 26 24 23 48 48 H 1.09001 * 109.47066 * 59.99747 * 27 24 23 49 49 H 1.09001 * 109.47273 * 179.97438 * 27 24 23 50 50 H 1.09001 * 109.47468 * 299.99742 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6114 -0.6619 -3.5093 8 7 2.9235 -1.9392 -3.4505 9 14 2.7904 0.2701 -5.1182 10 1 4.1530 0.8543 -5.2029 11 1 2.5793 -0.6608 -6.2558 12 1 1.7811 1.3579 -5.1751 13 6 2.0400 -0.7213 1.2492 14 1 3.1264 -0.6443 1.2951 15 6 1.6353 -2.1954 1.1879 16 7 1.4559 -0.1037 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1929 -0.7061 3.6896 19 6 1.4528 0.3272 4.8457 20 6 2.0419 0.1332 6.0935 21 6 1.4046 0.6376 7.2269 22 6 0.2340 1.3145 7.1060 23 7 -0.3441 1.5072 5.8965 24 6 -1.6104 2.2388 5.8113 25 6 -2.6808 1.3356 5.1953 26 6 -2.0484 2.6654 7.2138 27 6 -1.4246 3.4796 4.9357 28 6 0.2263 1.0368 4.7712 29 8 -0.3094 1.2198 3.6917 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1527 34 1 3.2469 -2.3965 -4.2424 35 1 2.0700 -2.6550 0.3002 36 1 1.9990 -2.7094 2.0776 37 1 0.5490 -2.2725 1.1420 38 1 0.6118 0.3701 2.3794 39 1 2.9750 -0.4033 6.1820 40 1 1.8449 0.4924 8.2023 41 1 -0.2471 1.7032 7.9913 42 1 -2.8131 0.4515 5.8191 43 1 -3.6231 1.8798 5.1323 44 1 -2.3687 1.0317 4.1961 45 1 -1.2858 3.3090 7.6526 46 1 -2.9903 3.2101 7.1504 47 1 -2.1807 1.7815 7.8378 48 1 -1.1126 3.1758 3.9365 49 1 -2.3669 4.0238 4.8720 50 1 -0.6621 4.1232 5.3745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717428925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:11 Heat of formation + Delta-G solvation = -17.507590 kcal Electronic energy + Delta-G solvation = -30232.642393 eV Core-core repulsion = 26261.262567 eV Total energy + Delta-G solvation = -3971.379826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16335 -39.42462 -37.48530 -37.09834 -36.37560 -33.62965 -32.49382 -31.57152 -30.47849 -29.17553 -28.17552 -28.01154 -27.77753 -25.05590 -24.21478 -23.82546 -22.85403 -21.27862 -20.11819 -18.96258 -18.11017 -17.49482 -17.42915 -16.86076 -16.22935 -16.11859 -15.24849 -14.86532 -14.71192 -14.60632 -14.30146 -14.28192 -14.13721 -13.74438 -13.30886 -13.21903 -13.02519 -12.75829 -12.68230 -12.52039 -12.39071 -12.38138 -12.22362 -11.95699 -11.77601 -11.64039 -11.60635 -11.44160 -11.11580 -10.84586 -10.71250 -10.34370 -10.25444 -10.14793 -10.00625 -9.76155 -9.67428 -9.47800 -8.82769 -8.51910 -8.24822 -6.87936 -5.68208 -2.96575 0.19865 1.51864 2.09402 2.80701 3.49778 3.54152 3.56155 3.64221 3.74869 3.93210 4.05879 4.25421 4.36721 4.51312 4.62320 4.67960 4.81471 4.89280 4.97516 4.98489 5.21233 5.24849 5.25514 5.39296 5.41449 5.53423 5.60422 5.65555 5.72789 5.78914 5.85454 5.89138 5.91165 5.92532 6.02384 6.15021 6.27492 6.37114 6.50337 6.62895 6.67251 6.70096 6.84994 6.94016 7.18753 7.25959 7.63964 7.78892 8.16411 8.50694 8.74799 9.61712 10.19057 10.54705 11.54765 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002758 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.533248 B =10151.453398 C =11102.724730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 H 0.050 0.950 4 N -0.720 5.720 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C 0.133 3.867 14 H 0.086 0.914 15 C -0.157 4.157 16 N -0.704 5.704 17 C 0.570 3.430 18 O -0.556 6.556 19 C -0.268 4.268 20 C 0.053 3.947 21 C -0.240 4.240 22 C 0.147 3.853 23 N -0.481 5.481 24 C 0.144 3.856 25 C -0.165 4.165 26 C -0.164 4.164 27 C -0.166 4.166 28 C 0.532 3.468 29 O -0.533 6.533 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.414 0.586 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 8.941 29.806 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.059 3.941 3 H 0.068 0.932 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.027 3.973 14 H 0.104 0.896 15 C -0.215 4.215 16 N -0.366 5.366 17 C 0.357 3.643 18 O -0.437 6.437 19 C -0.275 4.275 20 C 0.029 3.971 21 C -0.263 4.263 22 C 0.017 3.983 23 N -0.190 5.190 24 C 0.062 3.938 25 C -0.223 4.223 26 C -0.222 4.222 27 C -0.223 4.223 28 C 0.334 3.666 29 O -0.415 6.415 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.222 0.778 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.261 0.739 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.187 0.813 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.387 8.865 28.925 32.325 hybrid contribution -0.163 0.355 -0.716 0.816 sum -11.550 9.219 28.209 31.846 Atomic orbital electron populations 1.22501 0.99195 1.01102 1.00005 1.20331 0.92243 0.95448 0.86048 0.93242 1.42469 1.78232 1.10771 1.04887 1.19252 1.36295 0.93897 0.87193 0.91182 1.24726 1.02298 0.95999 0.98024 1.69661 1.51081 1.08614 1.28857 0.86184 0.77752 0.78547 0.83680 1.21790 1.21858 1.20828 1.21292 0.99012 0.92765 0.84187 0.89610 1.22128 1.01436 0.95969 1.01991 1.46754 1.27094 1.55417 1.07294 1.17428 0.84808 0.79074 0.83025 1.90770 1.19675 1.46764 1.86446 1.21201 0.98659 1.11471 0.96179 1.22039 0.96853 0.87869 0.90313 1.20685 0.97741 1.07658 1.00260 1.22317 0.93421 0.93259 0.89284 1.45712 1.21224 1.45074 1.06966 1.21070 0.82114 0.93046 0.97562 1.22255 0.97352 0.99028 1.03648 1.22314 1.03162 1.02312 0.94382 1.22256 1.02834 0.95172 1.02059 1.16988 0.85682 0.80600 0.83330 1.90594 1.64601 1.60294 1.26029 0.94115 0.92691 0.93089 0.77842 0.93557 0.90602 0.93342 0.92651 0.73888 0.83316 0.83007 0.81331 0.92339 0.90711 0.89157 0.91226 0.89737 0.91225 0.89144 0.90710 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.01 37.16 0.33 -3.02 16 2 C 0.17 3.75 2.93 -67.93 -0.20 3.55 16 3 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.72 -19.01 5.03 -53.42 -0.27 -19.28 16 5 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 6 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 7 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 9 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.13 2.70 2.66 -67.93 -0.18 2.52 16 14 H 0.09 1.93 7.51 -51.93 -0.39 1.54 16 15 C -0.16 -3.04 9.00 37.15 0.33 -2.71 16 16 N -0.70 -12.86 4.90 -54.99 -0.27 -13.13 16 17 C 0.57 10.17 7.70 -12.68 -0.10 10.07 16 18 O -0.56 -11.37 16.03 5.24 0.08 -11.29 16 19 C -0.27 -3.65 5.92 -104.50 -0.62 -4.27 16 20 C 0.05 0.53 9.70 -38.71 -0.38 0.15 16 21 C -0.24 -1.45 9.99 -40.01 -0.40 -1.85 16 22 C 0.15 0.79 9.58 -16.85 -0.16 0.63 16 23 N -0.48 -3.96 2.53 -105.39 -0.27 -4.23 16 24 C 0.14 0.94 1.02 -131.82 -0.13 0.81 16 25 C -0.17 -1.21 8.39 37.16 0.31 -0.90 16 26 C -0.16 -0.48 7.09 37.16 0.26 -0.21 16 27 C -0.17 -1.24 8.39 37.16 0.31 -0.92 16 28 C 0.53 6.61 6.84 -14.92 -0.10 6.50 16 29 O -0.53 -7.74 9.83 5.02 0.05 -7.69 16 30 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.01 6.56 -51.93 -0.34 0.67 16 33 H 0.39 10.66 5.77 -40.82 -0.24 10.42 16 34 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.08 1.58 6.29 -51.93 -0.33 1.25 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 1.02 6.56 -51.93 -0.34 0.68 16 38 H 0.41 7.28 3.18 -40.82 -0.13 7.15 16 39 H 0.15 1.45 7.71 -52.49 -0.40 1.04 16 40 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.17 0.25 5.55 -52.49 -0.29 -0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.94 6.12 -51.93 -0.32 0.63 16 45 H 0.07 0.14 7.41 -51.92 -0.38 -0.25 16 46 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.13 7.41 -51.93 -0.38 -0.25 16 48 H 0.09 0.96 6.12 -51.93 -0.32 0.64 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -35.73 387.65 -7.63 -43.36 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.54 Total: 13.73 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.96 Total: 2.87 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.08 Total: -64.92 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.13 Total: -18.98 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.73 -7.63 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717428925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.852 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds