Wall clock time and date at job start Tue Mar 31 2020 19:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47026 * 2 1 4 4 N 1.46505 * 109.47252 * 240.00123 * 2 1 3 5 5 C 1.36942 * 119.99986 * 84.99680 * 4 2 1 6 6 H 1.08003 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99771 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99776 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47337 * 90.00068 * 9 7 5 11 11 H 1.48504 * 109.47355 * 210.00170 * 9 7 5 12 12 H 1.48500 * 109.47270 * 329.99845 * 9 7 5 13 13 C 1.53000 * 109.47190 * 120.00339 * 2 1 3 14 14 H 1.09003 * 109.46821 * 185.00416 * 13 2 1 15 15 C 1.52990 * 109.47277 * 64.99803 * 13 2 1 16 16 N 1.46502 * 109.46979 * 304.99782 * 13 2 1 17 17 C 1.34774 * 120.00035 * 205.00502 * 16 13 2 18 18 O 1.21643 * 120.00230 * 5.11085 * 17 16 13 19 19 C 1.47080 * 119.99744 * 185.11901 * 17 16 13 20 20 C 1.39344 * 120.58644 * 174.14878 * 19 17 16 21 21 C 1.39469 * 118.95814 * 180.22482 * 20 19 17 22 22 C 1.35760 * 120.13039 * 359.51067 * 21 20 19 23 23 N 1.35434 * 121.23319 * 0.47703 * 22 21 20 24 24 C 1.46494 * 119.47056 * 179.75865 * 23 22 21 25 25 C 1.53005 * 109.46987 * 240.01970 * 24 23 22 26 26 C 1.52998 * 109.47574 * 0.02562 * 24 23 22 27 27 C 1.52995 * 109.47160 * 120.02355 * 24 23 22 28 28 C 1.34650 * 121.05302 * 359.78053 * 23 22 21 29 29 O 1.21891 * 120.09891 * 179.97438 * 28 23 22 30 30 H 1.08994 * 109.47138 * 299.99753 * 1 2 3 31 31 H 1.09002 * 109.46877 * 60.00113 * 1 2 3 32 32 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00083 * 265.00115 * 4 2 1 34 34 H 0.96997 * 120.00493 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47188 * 60.00625 * 15 13 2 36 36 H 1.09001 * 109.47266 * 179.97438 * 15 13 2 37 37 H 1.09003 * 109.47697 * 300.00077 * 15 13 2 38 38 H 0.97004 * 119.99877 * 25.00149 * 16 13 2 39 39 H 1.07995 * 120.51738 * 359.95093 * 20 19 17 40 40 H 1.08000 * 119.93416 * 179.72400 * 21 20 19 41 41 H 1.08000 * 119.37993 * 180.23739 * 22 21 20 42 42 H 1.09004 * 109.46815 * 60.00067 * 25 24 23 43 43 H 1.09002 * 109.47129 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47326 * 300.00306 * 25 24 23 45 45 H 1.09009 * 109.46735 * 59.99983 * 26 24 23 46 46 H 1.08992 * 109.47603 * 179.97438 * 26 24 23 47 47 H 1.08996 * 109.47358 * 300.00801 * 26 24 23 48 48 H 1.09001 * 109.47066 * 59.99747 * 27 24 23 49 49 H 1.09001 * 109.47273 * 179.97438 * 27 24 23 50 50 H 1.09001 * 109.47468 * 299.99742 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6114 -0.6619 -3.5093 8 7 2.9235 -1.9392 -3.4505 9 14 2.7904 0.2701 -5.1182 10 1 4.1530 0.8543 -5.2029 11 1 2.5793 -0.6608 -6.2558 12 1 1.7811 1.3579 -5.1751 13 6 2.0400 -0.7213 1.2492 14 1 3.1264 -0.6443 1.2951 15 6 1.6353 -2.1954 1.1879 16 7 1.4559 -0.1037 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1929 -0.7061 3.6896 19 6 1.4528 0.3272 4.8457 20 6 2.0419 0.1332 6.0935 21 6 1.4046 0.6376 7.2269 22 6 0.2340 1.3145 7.1060 23 7 -0.3441 1.5072 5.8965 24 6 -1.6104 2.2388 5.8113 25 6 -2.6808 1.3356 5.1953 26 6 -2.0484 2.6654 7.2138 27 6 -1.4246 3.4796 4.9357 28 6 0.2263 1.0368 4.7712 29 8 -0.3094 1.2198 3.6917 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1527 34 1 3.2469 -2.3965 -4.2424 35 1 2.0700 -2.6550 0.3002 36 1 1.9990 -2.7094 2.0776 37 1 0.5490 -2.2725 1.1420 38 1 0.6118 0.3701 2.3794 39 1 2.9750 -0.4033 6.1820 40 1 1.8449 0.4924 8.2023 41 1 -0.2471 1.7032 7.9913 42 1 -2.8131 0.4515 5.8191 43 1 -3.6231 1.8798 5.1323 44 1 -2.3687 1.0317 4.1961 45 1 -1.2858 3.3090 7.6526 46 1 -2.9903 3.2101 7.1504 47 1 -2.1807 1.7815 7.8378 48 1 -1.1126 3.1758 3.9365 49 1 -2.3669 4.0238 4.8720 50 1 -0.6621 4.1232 5.3745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717428925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:10 Heat of formation + Delta-G solvation = -42.122378 kcal Electronic energy + Delta-G solvation = -30233.709770 eV Core-core repulsion = 26261.262567 eV Total energy + Delta-G solvation = -3972.447203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.90027 -40.77314 -38.52874 -38.33277 -37.32355 -35.51984 -33.55431 -33.11254 -31.44870 -30.66726 -29.86832 -28.64196 -28.34119 -26.25967 -25.92882 -24.86632 -24.24095 -22.30672 -21.06698 -20.63724 -19.51110 -19.01989 -18.14703 -17.94910 -17.02534 -16.99551 -16.65079 -16.53293 -15.97511 -15.96532 -15.38786 -15.36340 -15.12954 -15.01839 -14.82911 -14.65250 -14.00908 -13.80236 -13.60625 -13.52685 -13.17374 -13.13367 -13.10248 -13.07675 -13.00903 -12.80520 -12.77441 -12.66757 -12.56647 -12.16562 -12.14630 -12.11088 -12.05912 -11.70684 -11.64650 -11.12851 -11.04732 -10.98534 -10.69157 -10.01724 -9.07327 -9.04890 -7.95206 -5.25097 -0.54891 0.81405 1.44157 1.45708 1.48454 1.56701 1.74972 2.32744 2.58270 2.73343 3.37393 3.39807 3.67041 3.78937 3.81351 3.86678 3.91966 3.92509 3.97324 4.00095 4.03897 4.24908 4.28029 4.53453 4.55656 4.63874 4.65938 4.67018 4.77305 4.80978 4.86007 4.88742 4.91393 4.94208 4.97013 5.06048 5.11006 5.18992 5.21432 5.27150 5.31262 5.31945 5.47971 5.51757 5.54340 5.64905 5.99959 6.26238 6.64150 6.92801 7.32450 7.37895 8.04209 8.31359 9.28490 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002758 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.533248 B =10151.453398 C =11102.724730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.170 3.830 3 H 0.038 0.962 4 N -0.731 5.731 5 C -0.243 4.243 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.977 3.023 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.269 1.269 13 C 0.143 3.857 14 H 0.056 0.944 15 C -0.145 4.145 16 N -0.705 5.705 17 C 0.564 3.436 18 O -0.597 6.597 19 C -0.326 4.326 20 C 0.072 3.928 21 C -0.240 4.240 22 C 0.176 3.824 23 N -0.477 5.477 24 C 0.140 3.860 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.165 4.165 28 C 0.525 3.475 29 O -0.567 6.567 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.417 0.583 39 H 0.145 0.855 40 H 0.197 0.803 41 H 0.225 0.775 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 10.884 33.843 38.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.056 0.944 4 N -0.374 5.374 5 C -0.375 4.375 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.805 3.195 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.194 1.194 13 C 0.037 3.963 14 H 0.075 0.925 15 C -0.203 4.203 16 N -0.367 5.367 17 C 0.354 3.646 18 O -0.481 6.481 19 C -0.333 4.333 20 C 0.048 3.952 21 C -0.261 4.261 22 C 0.045 3.955 23 N -0.183 5.183 24 C 0.059 3.941 25 C -0.222 4.222 26 C -0.218 4.218 27 C -0.223 4.223 28 C 0.329 3.671 29 O -0.453 6.453 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.212 0.788 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.266 0.734 39 H 0.163 0.837 40 H 0.214 0.786 41 H 0.241 0.759 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.111 0.889 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.403 10.858 33.023 37.256 hybrid contribution 0.405 -0.170 -1.725 1.780 sum -12.999 10.689 31.298 35.535 Atomic orbital electron populations 1.22284 0.97053 1.01333 1.00505 1.20411 0.93531 0.94513 0.85439 0.94428 1.42610 1.78609 1.10500 1.05652 1.19617 1.35475 0.94217 0.88142 0.90792 1.25585 1.02641 0.96966 1.01524 1.69826 1.52381 1.10188 1.29572 0.85094 0.77833 0.77428 0.79112 1.21507 1.21932 1.19390 1.20918 0.97337 0.93365 0.84692 0.92534 1.21993 1.01879 0.95174 1.01248 1.46717 1.27253 1.55759 1.06959 1.18124 0.84336 0.78143 0.83962 1.90720 1.21383 1.48839 1.87153 1.20836 1.00937 1.16207 0.95359 1.22306 0.96346 0.86128 0.90372 1.21160 0.97717 1.06809 1.00438 1.23307 0.92469 0.90230 0.89487 1.45811 1.21607 1.43994 1.06878 1.21310 0.80840 0.91943 1.00053 1.22228 0.98454 0.99818 1.01714 1.22360 1.04322 1.03642 0.91442 1.22231 1.03809 0.95984 1.00253 1.16866 0.85410 0.80743 0.84106 1.90550 1.65374 1.61778 1.27555 0.92081 0.93593 0.92946 0.78847 0.93920 0.92358 0.92899 0.91564 0.73449 0.83683 0.78593 0.75877 0.91700 0.88958 0.92971 0.89329 0.88434 0.89237 0.93056 0.88928 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.25 9.01 71.98 0.65 -5.60 16 2 C 0.17 7.90 2.93 44.99 0.13 8.03 16 3 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.73 -40.31 5.03 -322.92 -1.63 -41.93 16 5 C -0.24 -14.39 9.93 84.03 0.83 -13.55 16 6 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 8 N -0.97 -61.94 13.06 21.65 0.28 -61.66 16 9 Si 0.98 48.35 29.55 68.60 2.03 50.38 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.14 6.22 2.66 44.99 0.12 6.34 16 14 H 0.06 2.77 7.51 -2.39 -0.02 2.75 16 15 C -0.14 -5.93 9.00 71.98 0.65 -5.28 16 16 N -0.70 -27.44 4.90 -446.14 -2.19 -29.63 16 17 C 0.56 21.43 7.70 86.56 0.67 22.10 16 18 O -0.60 -26.12 16.03 -4.17 -0.07 -26.19 16 19 C -0.33 -9.10 5.92 -19.79 -0.12 -9.21 16 20 C 0.07 1.36 9.70 22.83 0.22 1.58 16 21 C -0.24 -1.81 9.99 21.99 0.22 -1.59 16 22 C 0.18 0.97 9.58 83.56 0.80 1.77 16 23 N -0.48 -6.58 2.53 -605.56 -1.53 -8.11 16 24 C 0.14 1.41 1.02 3.60 0.00 1.41 16 25 C -0.16 -2.15 8.39 71.98 0.60 -1.54 16 26 C -0.16 -0.01 7.09 71.98 0.51 0.50 16 27 C -0.17 -2.22 8.39 71.98 0.60 -1.61 16 28 C 0.53 13.06 6.84 85.17 0.58 13.64 16 29 O -0.57 -17.33 9.83 -4.96 -0.05 -17.38 16 30 H 0.06 2.25 6.29 -2.39 -0.02 2.24 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 2.12 6.56 -2.39 -0.02 2.11 16 33 H 0.38 21.93 5.77 -92.71 -0.54 21.39 16 34 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.06 2.58 6.29 -2.39 -0.02 2.57 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.53 6.56 -2.39 -0.02 2.51 16 38 H 0.42 15.58 3.18 -92.76 -0.30 15.29 16 39 H 0.15 2.76 7.71 -2.91 -0.02 2.74 16 40 H 0.20 -0.17 8.06 -2.91 -0.02 -0.20 16 41 H 0.22 -1.15 5.55 -2.91 -0.02 -1.17 16 42 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 1.12 6.12 -2.39 -0.01 1.10 16 45 H 0.09 -0.27 7.41 -2.38 -0.02 -0.28 16 46 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.09 -0.28 7.41 -2.39 -0.02 -0.30 16 48 H 0.05 1.13 6.12 -2.39 -0.01 1.11 16 49 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -84.91 387.65 3.93 -80.98 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: 0.14 Total: 40.62 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.94 Total: 12.92 kcal Atomic # 7 Polarization: -136.27 SS G_CDS: -5.06 Total: -141.34 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.12 Total: -43.57 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -84.91 3.93 -80.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717428925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.861 kcal (2) G-P(sol) polarization free energy of solvation -84.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds