Wall clock time and date at job start Tue Mar 31 2020 19:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 O 1.42895 * 109.47000 * 240.00331 * 2 1 3 5 5 C 1.35501 * 117.00085 * 269.99788 * 4 2 1 6 6 C 1.39165 * 119.52633 * 180.02562 * 5 4 2 7 7 C 1.37962 * 119.26056 * 179.97438 * 6 5 4 8 8 C 1.40284 * 118.35538 * 0.02562 * 7 6 5 9 9 C 1.47614 * 120.49302 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00454 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99896 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00255 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.47274 * 34.99509 * 12 11 9 14 14 C 1.53000 * 109.47193 * 274.99925 * 12 11 9 15 15 C 1.53004 * 109.47377 * 154.99485 * 12 11 9 16 16 C 1.52992 * 109.47116 * 295.00041 * 15 12 11 17 17 C 1.53004 * 109.47116 * 179.97438 * 16 15 12 18 18 N 1.46497 * 109.47389 * 179.97438 * 17 16 15 19 19 C 1.36933 * 120.00195 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99942 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00235 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99850 * 0.02562 * 21 19 18 23 23 Si 1.86789 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47359 * 60.00068 * 23 21 19 25 25 H 1.48504 * 109.47420 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47507 * 300.00204 * 23 21 19 27 27 C 1.39513 * 119.00749 * 359.97438 * 8 7 6 28 28 N 1.31669 * 120.62584 * 359.72740 * 27 8 7 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 36 36 H 1.07994 * 120.37349 * 359.97438 * 6 5 4 37 37 H 1.08005 * 120.81884 * 180.02562 * 7 6 5 38 38 H 0.97004 * 119.99911 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46671 * 299.99953 * 14 12 11 40 40 H 1.08997 * 109.47215 * 59.99704 * 14 12 11 41 41 H 1.08995 * 109.47751 * 180.02562 * 14 12 11 42 42 H 1.08994 * 109.46602 * 55.00210 * 15 12 11 43 43 H 1.09000 * 109.46734 * 174.99570 * 15 12 11 44 44 H 1.09003 * 109.46959 * 299.99578 * 16 15 12 45 45 H 1.09001 * 109.47516 * 59.99608 * 16 15 12 46 46 H 1.09000 * 109.47041 * 300.00117 * 17 16 15 47 47 H 1.09002 * 109.47326 * 59.99995 * 17 16 15 48 48 H 0.97006 * 119.99578 * 359.97438 * 18 17 16 49 49 H 0.96992 * 120.00015 * 179.97438 * 22 21 19 50 50 H 1.08001 * 119.68754 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2114 -2.0091 -1.0655 6 6 2.6754 -2.7175 -2.1699 7 6 2.8828 -4.0770 -2.0605 8 6 2.6147 -4.6950 -0.8300 9 6 2.8206 -6.1468 -0.6603 10 8 3.2249 -6.8164 -1.5911 11 7 2.5593 -6.7304 0.5262 12 6 2.7642 -8.1711 0.6948 13 1 3.6267 -8.4867 0.1077 14 6 1.5198 -8.9225 0.2173 15 6 3.0118 -8.4816 2.1724 16 6 4.3234 -7.8316 2.6172 17 6 4.5707 -8.1415 4.0950 18 7 5.8269 -7.5196 4.5208 19 6 6.2575 -7.6613 5.8129 20 1 5.6713 -8.2320 6.5180 21 6 7.4481 -7.0725 6.2164 22 7 8.1628 -6.3775 5.3570 23 14 8.0359 -7.2664 7.9787 24 1 8.2282 -8.7077 8.2807 25 1 9.3236 -6.5475 8.1531 26 1 7.0229 -6.6978 8.9038 27 6 2.1516 -3.9167 0.2313 28 7 1.9731 -2.6205 0.0846 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.8708 -2.2087 -3.1022 37 1 3.2427 -4.6513 -2.9014 38 1 2.2364 -6.1962 1.2687 39 1 0.6573 -8.6069 0.8044 40 1 1.3435 -8.7013 -0.8353 41 1 1.6720 -9.9944 0.3431 42 1 2.1898 -8.0867 2.7693 43 1 3.0758 -9.5609 2.3110 44 1 5.1454 -8.2266 2.0202 45 1 4.2594 -6.7523 2.4785 46 1 3.7486 -7.7463 4.6916 47 1 4.6346 -9.2208 4.2341 48 1 6.3536 -7.0074 3.8874 49 1 8.9945 -5.9657 5.6389 50 1 1.9413 -4.3812 1.1834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717670617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:57 Heat of formation + Delta-G solvation = -46.120197 kcal Electronic energy + Delta-G solvation = -28203.618769 eV Core-core repulsion = 24230.998208 eV Total energy + Delta-G solvation = -3972.620561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19230 -39.89353 -38.34122 -36.75005 -34.86157 -33.72711 -32.83403 -32.71429 -31.55749 -30.12631 -29.28143 -27.64015 -25.71643 -24.70113 -24.35907 -23.01751 -21.75298 -21.16343 -20.79810 -20.66036 -18.92057 -17.97182 -17.29910 -17.00488 -16.19008 -16.05902 -15.32024 -15.04860 -14.88770 -14.79195 -14.55195 -14.42185 -14.04641 -13.76765 -13.67492 -13.44562 -13.32748 -13.05922 -12.91518 -12.76540 -12.68213 -12.63927 -12.27844 -12.19743 -12.10435 -11.33522 -11.30171 -11.18314 -11.11254 -10.84059 -10.80296 -10.50113 -10.41613 -10.29892 -10.29064 -10.02391 -9.77000 -9.67460 -9.20663 -8.85388 -8.82502 -6.90277 -5.74564 -3.03363 0.44693 0.87426 2.61136 2.69991 3.01357 3.44806 3.48830 3.50275 3.57387 3.81356 4.43223 4.47119 4.53717 4.57564 4.60002 4.66520 4.73263 4.81638 4.89835 5.03439 5.14128 5.18275 5.24371 5.32587 5.37172 5.41759 5.43221 5.54609 5.55808 5.58716 5.62532 5.72659 5.76254 5.80033 5.80475 5.96382 6.03173 6.06267 6.11224 6.20577 6.36082 6.41481 6.44403 6.87222 6.87296 6.90549 7.36510 7.41562 7.70485 8.08587 8.44498 9.55083 10.14288 10.48471 11.48366 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008266 B = 0.002528 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.366624 B =11075.434749 C =13544.892284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.346 3.654 6 C -0.200 4.200 7 C 0.018 3.982 8 C -0.227 4.227 9 C 0.570 3.430 10 O -0.540 6.540 11 N -0.716 5.716 12 C 0.142 3.858 13 H 0.091 0.909 14 C -0.162 4.162 15 C -0.123 4.123 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.183 3.817 28 N -0.542 5.542 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.399 0.601 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.795 9.384 -15.865 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 C -0.208 4.208 4 O -0.205 6.205 5 C 0.167 3.833 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.233 4.233 9 C 0.357 3.643 10 O -0.418 6.418 11 N -0.368 5.368 12 C 0.038 3.962 13 H 0.109 0.891 14 C -0.220 4.220 15 C -0.162 4.162 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.025 3.975 28 N -0.265 5.265 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.234 0.766 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.749 9.552 -15.868 26.355 hybrid contribution 0.643 -0.093 0.754 0.995 sum -18.106 9.460 -15.114 25.412 Atomic orbital electron populations 1.22217 0.94686 1.02935 1.02713 1.22447 0.94503 0.92965 0.87868 1.21917 1.02217 0.93655 1.03057 1.86276 1.79330 1.15807 1.39058 1.20065 0.88910 0.84756 0.89534 1.21053 1.07494 0.94038 0.99445 1.21523 0.89654 0.92918 0.96661 1.20811 1.10595 0.95174 0.96744 1.17852 0.77197 0.86350 0.82886 1.90776 1.46095 1.64746 1.40152 1.46008 1.67706 1.09925 1.13163 1.21083 0.98770 0.79025 0.97349 0.89112 1.22174 0.97711 1.00483 1.01673 1.21860 0.98742 1.02127 0.93439 1.21739 0.96233 1.00590 0.97837 1.20647 0.89632 0.95776 0.91421 1.42376 1.22272 1.62662 1.10547 1.19195 1.03383 1.26979 0.87578 0.91274 1.24756 0.97737 1.00650 0.97966 1.69654 1.15944 1.38887 1.33797 0.86259 0.77842 0.77488 0.84543 1.21264 1.21678 1.21283 1.22639 0.89659 0.87589 0.97650 1.67268 1.22741 1.12228 1.24274 0.91968 0.90873 0.92008 0.88827 0.90290 0.91638 0.91644 0.83413 0.82818 0.76564 0.92501 0.92280 0.91448 0.91371 0.90135 0.91893 0.92095 0.96574 0.96507 0.78336 0.93471 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.53 37.16 0.35 -0.86 16 2 C 0.08 0.66 3.11 -26.73 -0.08 0.58 16 3 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 4 O -0.30 -3.05 9.75 -18.20 -0.18 -3.22 16 5 C 0.35 3.73 7.46 -16.96 -0.13 3.60 16 6 C -0.20 -1.90 10.02 -39.34 -0.39 -2.29 16 7 C 0.02 0.18 9.70 -38.91 -0.38 -0.19 16 8 C -0.23 -2.49 5.89 -104.83 -0.62 -3.11 16 9 C 0.57 7.13 7.74 -12.43 -0.10 7.04 16 10 O -0.54 -8.44 16.08 5.29 0.09 -8.36 16 11 N -0.72 -7.63 4.48 -54.82 -0.25 -7.88 16 12 C 0.14 1.57 2.57 -67.93 -0.17 1.39 16 13 H 0.09 1.19 7.58 -51.92 -0.39 0.79 16 14 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 15 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 16 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 17 C 0.15 3.04 6.26 -4.04 -0.03 3.02 16 18 N -0.73 -19.00 5.60 -59.91 -0.34 -19.34 16 19 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 23 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 C 0.18 1.85 10.71 -17.15 -0.18 1.66 16 28 N -0.54 -5.97 8.61 -12.97 -0.11 -6.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.89 6.97 -51.93 -0.36 0.53 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.42 7.73 -52.48 -0.41 1.02 16 38 H 0.40 3.44 6.65 -40.82 -0.27 3.17 16 39 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.96 7.75 -51.93 -0.40 0.55 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 50 H 0.16 1.25 6.41 -52.49 -0.34 0.91 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -34.35 414.89 -8.73 -43.08 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.37 Total: 8.12 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.53 Total: -2.16 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.03 Total: -61.33 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.35 -8.73 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.037 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds