Wall clock time and date at job start Tue Mar 31 2020 19:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 O 1.42898 * 109.46831 * 119.99910 * 2 1 3 5 5 C 1.35498 * 116.99832 * 90.00225 * 4 2 1 6 6 C 1.39172 * 119.52624 * 179.97438 * 5 4 2 7 7 C 1.37955 * 119.26543 * 179.97438 * 6 5 4 8 8 C 1.40277 * 118.35724 * 0.02562 * 7 6 5 9 9 C 1.47615 * 120.50097 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99838 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00616 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00503 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46766 * 324.99718 * 12 11 9 14 14 C 1.52999 * 109.47568 * 84.99418 * 12 11 9 15 15 C 1.52995 * 109.47245 * 204.99908 * 12 11 9 16 16 C 1.53004 * 109.47453 * 64.99818 * 15 12 11 17 17 C 1.53004 * 109.47353 * 180.02562 * 16 15 12 18 18 N 1.46495 * 109.46783 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99557 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00245 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47361 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46873 * 120.00465 * 23 21 19 26 26 H 1.48503 * 109.47549 * 240.00335 * 23 21 19 27 27 C 1.39527 * 119.00562 * 359.97438 * 8 7 6 28 28 N 1.31668 * 120.62333 * 359.97438 * 27 8 7 29 29 H 1.08989 * 109.47183 * 299.99901 * 1 2 3 30 30 H 1.09003 * 109.46916 * 60.00103 * 1 2 3 31 31 H 1.09001 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46879 * 239.99919 * 2 1 3 33 33 H 1.09001 * 109.47619 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47157 * 299.99749 * 3 2 1 35 35 H 1.09006 * 109.46975 * 59.99868 * 3 2 1 36 36 H 1.08007 * 120.36716 * 0.27468 * 6 5 4 37 37 H 1.08004 * 120.81934 * 180.02562 * 7 6 5 38 38 H 0.96999 * 119.99364 * 359.97438 * 11 9 8 39 39 H 1.09006 * 109.46577 * 59.99900 * 14 12 11 40 40 H 1.08994 * 109.47201 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47109 * 300.00447 * 14 12 11 42 42 H 1.09006 * 109.47044 * 184.99745 * 15 12 11 43 43 H 1.09001 * 109.47482 * 304.99829 * 15 12 11 44 44 H 1.09006 * 109.46935 * 299.99993 * 16 15 12 45 45 H 1.08993 * 109.46929 * 59.99901 * 16 15 12 46 46 H 1.08997 * 109.46985 * 299.99877 * 17 16 15 47 47 H 1.08998 * 109.47007 * 59.99619 * 17 16 15 48 48 H 0.96999 * 120.00306 * 359.97438 * 18 17 16 49 49 H 0.97002 * 120.00417 * 180.02562 * 22 21 19 50 50 H 1.07997 * 119.68967 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2113 -2.0091 1.0654 6 6 2.6752 -2.7176 2.1698 7 6 2.8816 -4.0773 2.0607 8 6 2.6137 -4.6953 0.8303 9 6 2.8174 -6.1475 0.6611 10 8 3.2208 -6.8173 1.5922 11 7 2.5562 -6.7310 -0.5254 12 6 2.7589 -8.1721 -0.6934 13 1 3.6205 -8.4887 -0.1056 14 6 1.5131 -8.9215 -0.2166 15 6 3.0072 -8.4834 -2.1706 16 6 4.3202 -7.8355 -2.6148 17 6 4.5681 -8.1463 -4.0923 18 7 5.8249 -7.5254 -4.5176 19 6 6.2567 -7.6689 -5.8092 20 1 5.6705 -8.2394 -6.5144 21 6 7.4474 -7.0801 -6.2124 22 7 8.1616 -6.3843 -5.3533 23 14 8.0367 -7.2764 -7.9741 24 1 7.0610 -8.0986 -8.7338 25 1 8.1560 -5.9388 -8.6081 26 1 9.3615 -7.9474 -7.9811 27 6 2.1506 -3.9169 -0.2311 28 7 1.9666 -2.6216 -0.0826 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.8669 -2.2094 3.1034 37 1 3.2407 -4.6517 2.9019 38 1 2.2341 -6.1967 -1.2681 39 1 0.6515 -8.6048 -0.8044 40 1 1.6642 -9.9937 -0.3412 41 1 1.3363 -8.6997 0.8359 42 1 3.0697 -9.5629 -2.3089 43 1 2.1862 -8.0875 -2.7684 44 1 4.2577 -6.7560 -2.4765 45 1 5.1411 -8.2315 -2.0171 46 1 4.6304 -9.2256 -4.2310 47 1 3.7470 -7.7501 -4.6897 48 1 6.3513 -7.0126 -3.8844 49 1 8.9934 -5.9726 -5.6351 50 1 1.9412 -4.3812 -1.1834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717670618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:00 Heat of formation + Delta-G solvation = -46.293545 kcal Electronic energy + Delta-G solvation = -28203.445710 eV Core-core repulsion = 24230.817632 eV Total energy + Delta-G solvation = -3972.628078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19280 -39.89430 -38.34193 -36.75108 -34.86536 -33.72765 -32.83502 -32.71606 -31.55890 -30.12713 -29.28292 -27.64036 -25.71930 -24.70220 -24.35888 -23.02234 -21.75417 -21.16475 -20.80044 -20.66142 -18.92148 -17.97267 -17.30057 -17.00813 -16.18943 -16.05858 -15.32286 -15.04858 -14.88711 -14.79462 -14.55349 -14.42168 -14.04647 -13.76891 -13.67380 -13.45431 -13.32834 -13.05487 -12.91715 -12.76640 -12.68331 -12.64047 -12.27852 -12.20014 -12.10630 -11.33760 -11.30355 -11.18450 -11.11244 -10.86861 -10.80838 -10.49127 -10.40992 -10.30563 -10.28447 -9.98004 -9.77054 -9.68557 -9.20739 -8.86527 -8.82627 -6.90398 -5.75118 -3.03840 0.44644 0.87419 2.61085 2.69928 3.01300 3.43760 3.49038 3.51600 3.57347 3.81321 4.43138 4.47069 4.53670 4.57295 4.59997 4.66422 4.73177 4.81567 4.89751 5.03319 5.14038 5.18238 5.24331 5.32568 5.37127 5.41702 5.43243 5.54501 5.55705 5.58542 5.62340 5.72613 5.76196 5.79950 5.80495 5.96289 6.03115 6.06127 6.11083 6.20421 6.35814 6.41280 6.44322 6.87045 6.87259 6.90337 7.36439 7.41515 7.71190 8.08530 8.43857 9.54700 10.13891 10.48022 11.47896 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008270 B = 0.002527 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.814525 B =11079.618718 C =13546.862528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.346 3.654 6 C -0.200 4.200 7 C 0.018 3.982 8 C -0.227 4.227 9 C 0.570 3.430 10 O -0.540 6.540 11 N -0.716 5.716 12 C 0.142 3.858 13 H 0.091 0.909 14 C -0.162 4.162 15 C -0.123 4.123 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.183 3.817 28 N -0.542 5.542 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.399 0.601 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.017 0.983 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.851 9.374 15.855 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 C -0.209 4.209 4 O -0.205 6.205 5 C 0.167 3.833 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.233 4.233 9 C 0.357 3.643 10 O -0.418 6.418 11 N -0.368 5.368 12 C 0.038 3.962 13 H 0.109 0.891 14 C -0.220 4.220 15 C -0.162 4.162 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.025 3.975 28 N -0.265 5.265 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.234 0.766 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.035 0.965 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.829 9.530 15.857 26.397 hybrid contribution 0.665 -0.077 -0.743 1.000 sum -18.164 9.453 15.113 25.450 Atomic orbital electron populations 1.22216 0.94684 1.02942 1.02709 1.22445 0.94508 0.92961 0.87856 1.21918 1.02218 0.93656 1.03058 1.86276 1.79332 1.15804 1.39057 1.20065 0.88884 0.84753 0.89560 1.21055 1.07535 0.94032 0.99409 1.21518 0.89649 0.92915 0.96674 1.20811 1.10622 0.95156 0.96734 1.17853 0.77188 0.86358 0.82888 1.90777 1.46107 1.64758 1.40130 1.46005 1.67754 1.09897 1.13143 1.21079 0.98767 0.79021 0.97356 0.89110 1.22174 0.97700 1.00494 1.01675 1.21863 0.98734 1.02131 0.93445 1.21741 0.96221 1.00601 0.97838 1.20647 0.89618 0.95786 0.91428 1.42392 1.22230 1.62624 1.10634 1.19286 1.03307 1.26792 0.87592 0.91165 1.24758 0.97767 1.00671 0.97978 1.69674 1.15924 1.38982 1.33647 0.86116 0.78415 0.77211 0.84460 1.20562 1.21875 1.21858 1.22642 0.89642 0.87609 0.97644 1.67266 1.22687 1.12236 1.24327 0.92005 0.90880 0.91958 0.88842 0.91636 0.90284 0.91649 0.83413 0.82819 0.76566 0.92495 0.91447 0.92286 0.90135 0.91371 0.92093 0.91892 0.96488 0.96573 0.78339 0.93579 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.53 37.16 0.35 -0.86 16 2 C 0.08 0.66 3.10 -26.73 -0.08 0.58 16 3 C -0.15 -0.99 9.56 37.15 0.36 -0.64 16 4 O -0.30 -3.05 9.75 -18.19 -0.18 -3.22 16 5 C 0.35 3.73 7.46 -16.96 -0.13 3.60 16 6 C -0.20 -1.90 10.02 -39.34 -0.39 -2.29 16 7 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 8 C -0.23 -2.49 5.89 -104.82 -0.62 -3.11 16 9 C 0.57 7.13 7.74 -12.43 -0.10 7.03 16 10 O -0.54 -8.44 16.08 5.29 0.09 -8.35 16 11 N -0.72 -7.62 4.48 -54.83 -0.25 -7.87 16 12 C 0.14 1.56 2.57 -67.94 -0.17 1.39 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 15 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 16 C -0.13 -1.96 5.22 -26.73 -0.14 -2.09 16 17 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 18 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 23 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.18 1.84 10.71 -17.14 -0.18 1.66 16 28 N -0.54 -5.96 8.61 -12.96 -0.11 -6.08 16 29 H 0.06 0.42 8.14 -51.94 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.89 6.97 -51.93 -0.36 0.53 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.15 1.42 7.73 -52.48 -0.41 1.02 16 38 H 0.40 3.44 6.65 -40.82 -0.27 3.17 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.16 1.25 6.41 -52.49 -0.34 0.91 16 LS Contribution 414.90 15.07 6.25 6.25 Total: -1.00 -34.37 414.90 -8.73 -43.10 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.37 Total: 8.01 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.53 Total: -2.13 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.03 Total: -61.26 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.37 -8.73 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.192 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds