Wall clock time and date at job start Tue Mar 31 2020 19:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 O 1.42898 * 109.46831 * 119.99910 * 2 1 3 5 5 C 1.35498 * 116.99832 * 90.00225 * 4 2 1 6 6 C 1.39172 * 119.52624 * 179.97438 * 5 4 2 7 7 C 1.37955 * 119.26543 * 179.97438 * 6 5 4 8 8 C 1.40277 * 118.35724 * 0.02562 * 7 6 5 9 9 C 1.47615 * 120.50097 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99838 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00616 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00503 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46766 * 324.99718 * 12 11 9 14 14 C 1.52999 * 109.47568 * 84.99418 * 12 11 9 15 15 C 1.52995 * 109.47245 * 204.99908 * 12 11 9 16 16 C 1.53004 * 109.47453 * 64.99818 * 15 12 11 17 17 C 1.53004 * 109.47353 * 180.02562 * 16 15 12 18 18 N 1.46495 * 109.46783 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99557 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00245 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47361 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46873 * 120.00465 * 23 21 19 26 26 H 1.48503 * 109.47549 * 240.00335 * 23 21 19 27 27 C 1.39527 * 119.00562 * 359.97438 * 8 7 6 28 28 N 1.31668 * 120.62333 * 359.97438 * 27 8 7 29 29 H 1.08989 * 109.47183 * 299.99901 * 1 2 3 30 30 H 1.09003 * 109.46916 * 60.00103 * 1 2 3 31 31 H 1.09001 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46879 * 239.99919 * 2 1 3 33 33 H 1.09001 * 109.47619 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47157 * 299.99749 * 3 2 1 35 35 H 1.09006 * 109.46975 * 59.99868 * 3 2 1 36 36 H 1.08007 * 120.36716 * 0.27468 * 6 5 4 37 37 H 1.08004 * 120.81934 * 180.02562 * 7 6 5 38 38 H 0.96999 * 119.99364 * 359.97438 * 11 9 8 39 39 H 1.09006 * 109.46577 * 59.99900 * 14 12 11 40 40 H 1.08994 * 109.47201 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47109 * 300.00447 * 14 12 11 42 42 H 1.09006 * 109.47044 * 184.99745 * 15 12 11 43 43 H 1.09001 * 109.47482 * 304.99829 * 15 12 11 44 44 H 1.09006 * 109.46935 * 299.99993 * 16 15 12 45 45 H 1.08993 * 109.46929 * 59.99901 * 16 15 12 46 46 H 1.08997 * 109.46985 * 299.99877 * 17 16 15 47 47 H 1.08998 * 109.47007 * 59.99619 * 17 16 15 48 48 H 0.96999 * 120.00306 * 359.97438 * 18 17 16 49 49 H 0.97002 * 120.00417 * 180.02562 * 22 21 19 50 50 H 1.07997 * 119.68967 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2113 -2.0091 1.0654 6 6 2.6752 -2.7176 2.1698 7 6 2.8816 -4.0773 2.0607 8 6 2.6137 -4.6953 0.8303 9 6 2.8174 -6.1475 0.6611 10 8 3.2208 -6.8173 1.5922 11 7 2.5562 -6.7310 -0.5254 12 6 2.7589 -8.1721 -0.6934 13 1 3.6205 -8.4887 -0.1056 14 6 1.5131 -8.9215 -0.2166 15 6 3.0072 -8.4834 -2.1706 16 6 4.3202 -7.8355 -2.6148 17 6 4.5681 -8.1463 -4.0923 18 7 5.8249 -7.5254 -4.5176 19 6 6.2567 -7.6689 -5.8092 20 1 5.6705 -8.2394 -6.5144 21 6 7.4474 -7.0801 -6.2124 22 7 8.1616 -6.3843 -5.3533 23 14 8.0367 -7.2764 -7.9741 24 1 7.0610 -8.0986 -8.7338 25 1 8.1560 -5.9388 -8.6081 26 1 9.3615 -7.9474 -7.9811 27 6 2.1506 -3.9169 -0.2311 28 7 1.9666 -2.6216 -0.0826 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.8669 -2.2094 3.1034 37 1 3.2407 -4.6517 2.9019 38 1 2.2341 -6.1967 -1.2681 39 1 0.6515 -8.6048 -0.8044 40 1 1.6642 -9.9937 -0.3412 41 1 1.3363 -8.6997 0.8359 42 1 3.0697 -9.5629 -2.3089 43 1 2.1862 -8.0875 -2.7684 44 1 4.2577 -6.7560 -2.4765 45 1 5.1411 -8.2315 -2.0171 46 1 4.6304 -9.2256 -4.2310 47 1 3.7470 -7.7501 -4.6897 48 1 6.3513 -7.0126 -3.8844 49 1 8.9934 -5.9726 -5.6351 50 1 1.9412 -4.3812 -1.1834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717670618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:59 Heat of formation + Delta-G solvation = -69.531863 kcal Electronic energy + Delta-G solvation = -28204.453399 eV Core-core repulsion = 24230.817632 eV Total energy + Delta-G solvation = -3973.635767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00242 -40.80113 -39.13281 -37.91497 -36.51735 -34.46931 -34.13586 -33.64459 -32.87528 -31.37068 -30.43784 -28.18625 -27.22871 -25.63675 -25.13156 -24.69713 -22.70211 -22.25494 -21.91213 -21.60188 -19.67698 -19.14084 -18.84419 -18.11139 -17.10361 -16.83274 -16.66549 -16.16240 -16.02788 -15.72738 -15.56186 -15.46457 -15.37571 -15.13166 -14.76358 -14.52669 -14.32106 -14.06787 -13.87449 -13.70958 -13.42272 -13.30749 -13.19499 -13.16099 -12.99412 -12.88751 -12.80491 -12.37010 -12.21287 -12.04367 -11.94990 -11.85807 -11.78238 -11.71091 -11.48427 -11.24646 -11.09528 -10.94075 -10.63586 -10.16024 -9.62435 -9.00210 -7.95838 -5.25013 -0.38959 0.09556 1.46937 1.48049 1.58262 1.77861 1.89111 2.13215 2.55714 2.73512 3.06620 3.38121 3.58589 3.68646 3.75500 3.87557 3.92059 3.99035 4.00940 4.05161 4.13193 4.26229 4.30800 4.42809 4.52471 4.60688 4.62817 4.69535 4.70242 4.81470 4.83655 4.85066 4.88729 4.91167 4.94563 4.97215 5.05094 5.15941 5.19106 5.24655 5.29735 5.34450 5.38338 5.44739 5.51621 5.57596 6.12206 6.26860 6.48582 6.61573 7.16251 7.32279 8.10045 8.31539 9.28165 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008270 B = 0.002527 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.814525 B =11079.618718 C =13546.862528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.071 3.929 3 C -0.148 4.148 4 O -0.305 6.305 5 C 0.335 3.665 6 C -0.197 4.197 7 C 0.014 3.986 8 C -0.239 4.239 9 C 0.570 3.430 10 O -0.577 6.577 11 N -0.708 5.708 12 C 0.144 3.856 13 H 0.067 0.933 14 C -0.154 4.154 15 C -0.110 4.110 16 C -0.114 4.114 17 C 0.149 3.851 18 N -0.751 5.751 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.294 1.294 27 C 0.183 3.817 28 N -0.553 5.553 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.410 0.590 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.020 0.980 47 H 0.027 0.973 48 H 0.371 0.629 49 H 0.251 0.749 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.589 9.437 14.978 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.212 6.212 5 C 0.156 3.844 6 C -0.217 4.217 7 C -0.012 4.012 8 C -0.245 4.245 9 C 0.357 3.643 10 O -0.458 6.458 11 N -0.360 5.360 12 C 0.040 3.960 13 H 0.085 0.915 14 C -0.213 4.213 15 C -0.148 4.148 16 C -0.152 4.152 17 C 0.023 3.977 18 N -0.394 5.394 19 C -0.376 4.376 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.025 3.975 28 N -0.277 5.277 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.187 0.813 37 H 0.177 0.823 38 H 0.248 0.752 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.045 0.955 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -20.625 9.576 14.954 27.216 hybrid contribution 1.156 -0.089 -0.453 1.245 sum -19.469 9.487 14.501 26.064 Atomic orbital electron populations 1.22178 0.93688 1.02358 1.03767 1.22636 0.95369 0.93619 0.86823 1.21928 1.01771 0.92537 1.04225 1.86270 1.79383 1.15587 1.39926 1.20332 0.89000 0.85135 0.89897 1.21260 1.06754 0.93729 0.99972 1.21665 0.89508 0.93311 0.96705 1.20787 1.11714 0.94421 0.97538 1.18072 0.76562 0.86821 0.82806 1.90754 1.48045 1.65641 1.41404 1.45964 1.66962 1.10009 1.13026 1.21017 0.98903 0.79317 0.96779 0.91471 1.22100 0.97213 1.01031 1.00920 1.21766 0.96824 1.02584 0.93605 1.21606 0.98055 1.00739 0.94791 1.20870 0.87372 0.95350 0.94083 1.42675 1.24023 1.62884 1.09773 1.19714 1.03249 1.25820 0.88798 0.90435 1.25626 0.98302 1.01103 1.02166 1.69836 1.16312 1.40485 1.35668 0.85046 0.77788 0.77067 0.79713 1.18792 1.21950 1.22121 1.22944 0.88987 0.87351 0.98206 1.67307 1.23152 1.12524 1.24679 0.91457 0.89290 0.93312 0.90164 0.92331 0.88572 0.91009 0.81348 0.82337 0.75233 0.90801 0.90198 0.93710 0.88930 0.89152 0.92404 0.93584 0.96203 0.95512 0.79754 0.94054 0.79894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.53 71.98 0.69 -1.49 16 2 C 0.07 1.16 3.10 30.59 0.09 1.25 16 3 C -0.15 -1.76 9.56 71.98 0.69 -1.08 16 4 O -0.30 -6.07 9.75 -87.99 -0.86 -6.93 16 5 C 0.33 7.08 7.46 84.83 0.63 7.71 16 6 C -0.20 -3.63 10.02 22.43 0.22 -3.41 16 7 C 0.01 0.27 9.70 22.70 0.22 0.49 16 8 C -0.24 -5.19 5.89 -20.00 -0.12 -5.31 16 9 C 0.57 14.20 7.74 86.72 0.67 14.87 16 10 O -0.58 -18.43 16.08 -3.99 -0.06 -18.49 16 11 N -0.71 -14.35 4.48 -445.64 -2.00 -16.35 16 12 C 0.14 2.99 2.57 44.99 0.12 3.11 16 13 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16 14 C -0.15 -2.63 9.48 71.98 0.68 -1.95 16 15 C -0.11 -2.23 4.75 30.59 0.15 -2.09 16 16 C -0.11 -3.42 5.22 30.60 0.16 -3.26 16 17 C 0.15 5.75 6.26 86.38 0.54 6.29 16 18 N -0.75 -38.78 5.60 -343.45 -1.92 -40.70 16 19 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 23 Si 0.97 46.44 29.55 68.60 2.03 48.46 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 C 0.18 3.58 10.71 85.03 0.91 4.49 16 28 N -0.55 -11.94 8.61 -307.82 -2.65 -14.59 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.51 6.97 -2.39 -0.02 1.49 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.16 2.97 7.73 -2.91 -0.02 2.95 16 38 H 0.41 6.35 6.65 -92.71 -0.62 5.73 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.77 7.75 -2.38 -0.02 1.75 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 20.61 7.67 -92.71 -0.71 19.90 16 49 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 50 H 0.18 2.56 6.41 -2.91 -0.02 2.55 16 Total: -1.00 -74.24 414.90 1.39 -72.85 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.39 Total: 33.58 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.96 Total: 2.50 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -6.29 Total: -131.97 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.92 Total: -25.42 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.24 1.39 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.317 kcal (2) G-P(sol) polarization free energy of solvation -74.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds