Wall clock time and date at job start Tue Mar 31 2020 19:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47635 * 2 1 4 4 O 1.42900 * 109.47574 * 120.00799 * 2 1 3 5 5 C 1.35648 * 117.00348 * 85.35600 * 4 2 1 6 6 C 1.39343 * 120.54189 * 354.60085 * 5 4 2 7 7 C 1.38301 * 118.43673 * 180.25722 * 6 5 4 8 8 C 1.38762 * 119.44717 * 359.73352 * 7 6 5 9 9 N 1.31371 * 121.06656 * 359.97438 * 8 7 6 10 10 C 1.32859 * 121.69790 * 359.97438 * 9 8 7 11 11 C 1.47830 * 119.78358 * 180.02562 * 10 9 8 12 12 O 1.21553 * 119.99907 * 180.02562 * 11 10 9 13 13 N 1.34774 * 120.00071 * 359.97438 * 11 10 9 14 14 C 1.46505 * 120.00133 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46797 * 325.00326 * 14 13 11 16 16 C 1.53005 * 109.46689 * 85.00137 * 14 13 11 17 17 C 1.52993 * 109.47163 * 204.99976 * 14 13 11 18 18 C 1.53001 * 109.47171 * 65.00229 * 17 14 13 19 19 C 1.53005 * 109.47392 * 179.97438 * 18 17 14 20 20 N 1.46502 * 109.47177 * 180.02562 * 19 18 17 21 21 C 1.36933 * 119.99679 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00142 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99641 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00037 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99796 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47189 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46934 * 120.00202 * 25 23 21 28 28 H 1.48497 * 109.47021 * 240.00066 * 25 23 21 29 29 H 1.09003 * 109.46940 * 299.99710 * 1 2 3 30 30 H 1.08997 * 109.47166 * 59.99162 * 1 2 3 31 31 H 1.08993 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46658 * 239.99993 * 2 1 3 33 33 H 1.08994 * 109.47203 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47016 * 300.00490 * 3 2 1 35 35 H 1.09003 * 109.46720 * 60.00155 * 3 2 1 36 36 H 1.08000 * 120.77577 * 359.97175 * 6 5 4 37 37 H 1.08007 * 120.27303 * 179.70758 * 7 6 5 38 38 H 1.07998 * 119.46337 * 180.02562 * 8 7 6 39 39 H 0.97002 * 120.00289 * 0.02562 * 13 11 10 40 40 H 1.08991 * 109.47271 * 299.99706 * 16 14 13 41 41 H 1.08998 * 109.47347 * 60.00526 * 16 14 13 42 42 H 1.09004 * 109.46710 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.47487 * 184.99856 * 17 14 13 44 44 H 1.09007 * 109.47640 * 305.00067 * 17 14 13 45 45 H 1.09002 * 109.47207 * 299.99716 * 18 17 14 46 46 H 1.08995 * 109.47245 * 59.99671 * 18 17 14 47 47 H 1.09002 * 109.46758 * 300.00047 * 19 18 17 48 48 H 1.08995 * 109.47148 * 59.99668 * 19 18 17 49 49 H 0.97000 * 119.99716 * 359.97438 * 20 19 18 50 50 H 0.96999 * 120.00131 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1195 -2.0237 1.0953 6 6 1.6761 -2.7128 -0.0318 7 6 1.8076 -4.0893 -0.0561 8 6 2.3771 -4.7395 1.0295 9 7 2.7936 -4.0685 2.0794 10 6 2.6897 -2.7458 2.1489 11 6 3.1728 -2.0334 3.3507 12 8 3.0792 -0.8234 3.4186 13 7 3.7161 -2.7257 4.3715 14 6 4.1954 -2.0196 5.5624 15 1 4.6140 -1.0566 5.2699 16 6 3.0289 -1.7968 6.5271 17 6 5.2746 -2.8567 6.2517 18 6 6.4927 -2.9746 5.3334 19 6 7.5723 -3.8112 6.0231 20 7 8.7389 -3.9236 5.1440 21 6 9.8379 -4.6313 5.5519 22 1 9.8446 -5.1069 6.5215 23 6 10.9431 -4.7381 4.7188 24 7 10.9344 -4.1597 3.5365 25 14 12.4421 -5.7041 5.2749 26 1 12.2006 -6.2542 6.6330 27 1 12.6919 -6.8196 4.3268 28 1 13.6251 -4.8072 5.3068 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.2358 -2.1847 -0.8646 37 1 1.4695 -4.6535 -0.9128 38 1 2.4804 -5.8143 1.0106 39 1 3.7905 -3.6913 4.3175 40 1 2.2601 -1.2005 6.0361 41 1 2.6103 -2.7598 6.8196 42 1 3.3854 -1.2711 7.4130 43 1 5.5680 -2.3746 7.1843 44 1 4.8825 -3.8513 6.4646 45 1 6.1994 -3.4567 4.4009 46 1 6.8849 -1.9802 5.1206 47 1 7.8655 -3.3287 6.9554 48 1 7.1804 -4.8057 6.2362 49 1 8.7327 -3.4966 4.2730 50 1 11.7068 -4.2341 2.9545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717693552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:47 Heat of formation + Delta-G solvation = -42.003993 kcal Electronic energy + Delta-G solvation = -28835.602432 eV Core-core repulsion = 24863.160363 eV Total energy + Delta-G solvation = -3972.442069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22361 -39.40771 -38.67230 -36.58719 -34.73676 -33.64771 -32.98056 -32.23556 -31.05841 -30.26731 -29.23865 -27.69488 -25.64636 -25.02976 -24.08087 -22.91569 -21.68910 -21.20569 -20.69856 -20.34893 -18.74480 -17.92998 -17.16978 -16.94441 -16.08113 -15.93760 -15.51123 -15.08314 -14.83979 -14.60120 -14.51106 -14.33502 -14.01000 -13.74962 -13.50034 -13.37644 -13.28127 -12.91252 -12.84442 -12.65496 -12.60858 -12.51659 -12.27416 -12.06646 -11.99107 -11.38134 -11.22094 -11.16530 -11.04942 -10.81788 -10.71688 -10.36969 -10.32653 -10.22902 -10.11644 -9.92002 -9.68112 -9.61486 -8.95816 -8.80419 -8.65353 -6.83921 -5.69658 -2.97857 0.43782 0.93506 2.72985 2.76493 3.15826 3.47370 3.52451 3.55155 3.70248 4.04695 4.21545 4.36603 4.39826 4.50519 4.63173 4.65203 4.70599 4.82255 4.88796 5.12503 5.14704 5.18698 5.26583 5.29171 5.35437 5.42191 5.54040 5.56622 5.62655 5.64554 5.69742 5.72155 5.74706 5.83976 5.91268 6.07215 6.09263 6.17886 6.25007 6.33169 6.46189 6.52185 6.65686 6.96724 6.97748 7.00878 7.43035 7.73675 7.76473 8.33945 8.49495 9.60125 10.20405 10.54799 11.53524 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.002383 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.852292 B =11746.823889 C =12448.329536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.265 6.265 5 C 0.142 3.858 6 C -0.180 4.180 7 C -0.107 4.107 8 C 0.058 3.942 9 N -0.417 5.417 10 C 0.043 3.957 11 C 0.573 3.427 12 O -0.519 6.519 13 N -0.704 5.704 14 C 0.141 3.859 15 H 0.089 0.911 16 C -0.161 4.161 17 C -0.122 4.122 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.409 0.591 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.017 0.983 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.299 5.612 -8.265 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.175 6.175 5 C 0.090 3.910 6 C -0.206 4.206 7 C -0.128 4.128 8 C -0.103 4.103 9 N -0.129 5.129 10 C -0.096 4.096 11 C 0.357 3.643 12 O -0.394 6.394 13 N -0.356 5.356 14 C 0.037 3.963 15 H 0.107 0.893 16 C -0.220 4.220 17 C -0.160 4.160 18 C -0.164 4.164 19 C 0.026 3.974 20 N -0.379 5.379 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.213 4.213 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.183 0.817 39 H 0.245 0.755 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -26.826 6.157 -7.187 28.446 hybrid contribution 0.440 -0.652 -1.193 1.429 sum -26.386 5.505 -8.380 28.227 Atomic orbital electron populations 1.22390 0.94861 1.02912 1.03534 1.22616 0.94461 0.94476 0.87280 1.21823 1.02580 0.92942 1.03080 1.86474 1.79022 1.14478 1.37564 1.20014 0.92708 0.84578 0.93654 1.21791 1.04703 0.95576 0.98559 1.22217 0.96750 0.94126 0.99660 1.22719 0.97545 1.00788 0.89202 1.67618 1.13029 1.06122 1.26124 1.20741 1.03886 0.89427 0.95573 1.17571 0.78243 0.86554 0.81905 1.90820 1.55616 1.12803 1.80121 1.45904 1.61151 1.11541 1.17040 1.21064 0.93900 0.96953 0.84374 0.89317 1.22168 0.98702 1.01844 0.99245 1.21840 0.94806 1.00151 0.99235 1.21733 0.94792 1.01021 0.98843 1.20650 0.87454 0.95941 0.93392 1.42401 1.13359 1.63413 1.18686 1.19301 0.92789 1.24328 1.00321 0.91162 1.24758 0.98542 1.01410 0.96597 1.69681 1.30414 1.48821 1.09405 0.86112 0.83182 0.79299 0.77602 1.20571 1.21920 1.21911 0.91058 0.90787 0.92108 0.90966 0.91305 0.90547 0.91076 0.83615 0.83970 0.81683 0.75474 0.92363 0.92528 0.91571 0.90299 0.91365 0.91913 0.92036 0.96536 0.96528 0.78343 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.20 37.16 0.34 -0.81 16 2 C 0.07 0.57 2.85 -26.73 -0.08 0.49 16 3 C -0.15 -1.12 9.56 37.16 0.36 -0.77 16 4 O -0.27 -3.34 7.86 -40.59 -0.32 -3.66 16 5 C 0.14 1.72 6.62 -38.56 -0.26 1.47 16 6 C -0.18 -1.56 8.35 -39.15 -0.33 -1.89 16 7 C -0.11 -0.81 10.10 -39.36 -0.40 -1.21 16 8 C 0.06 0.54 11.17 -17.56 -0.20 0.35 16 9 N -0.42 -5.19 9.54 -9.71 -0.09 -5.28 16 10 C 0.04 0.59 6.76 -82.88 -0.56 0.03 16 11 C 0.57 8.86 7.77 -12.34 -0.10 8.76 16 12 O -0.52 -9.27 14.80 -16.63 -0.25 -9.52 16 13 N -0.70 -9.65 4.52 -54.75 -0.25 -9.90 16 14 C 0.14 1.85 2.57 -67.93 -0.17 1.67 16 15 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 16 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 17 C -0.12 -1.60 4.75 -26.73 -0.13 -1.73 16 18 C -0.13 -2.17 5.22 -26.73 -0.14 -2.31 16 19 C 0.15 3.24 6.26 -4.04 -0.03 3.21 16 20 N -0.73 -19.72 5.60 -59.90 -0.34 -20.06 16 21 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 22 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 24 N -0.93 -29.31 13.06 55.49 0.72 -28.58 16 25 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 6.99 -51.93 -0.36 0.02 16 32 H 0.07 0.49 6.32 -51.92 -0.33 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.15 0.87 5.62 -52.49 -0.29 0.58 16 37 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.41 5.28 7.93 -40.82 -0.32 4.96 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 45 H 0.06 1.13 7.75 -51.93 -0.40 0.72 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.38 10.86 7.67 -40.82 -0.31 10.55 16 50 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -35.85 410.37 -9.23 -45.08 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.31 Total: 9.58 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.57 Total: -1.86 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 0.05 Total: -63.83 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.57 Total: -13.18 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.85 -9.23 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717693552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.080 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds