Wall clock time and date at job start Tue Mar 31 2020 19:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47635 * 2 1 4 4 O 1.42900 * 109.47574 * 120.00799 * 2 1 3 5 5 C 1.35648 * 117.00348 * 85.35600 * 4 2 1 6 6 C 1.39343 * 120.54189 * 354.60085 * 5 4 2 7 7 C 1.38301 * 118.43673 * 180.25722 * 6 5 4 8 8 C 1.38762 * 119.44717 * 359.73352 * 7 6 5 9 9 N 1.31371 * 121.06656 * 359.97438 * 8 7 6 10 10 C 1.32859 * 121.69790 * 359.97438 * 9 8 7 11 11 C 1.47830 * 119.78358 * 180.02562 * 10 9 8 12 12 O 1.21553 * 119.99907 * 180.02562 * 11 10 9 13 13 N 1.34774 * 120.00071 * 359.97438 * 11 10 9 14 14 C 1.46505 * 120.00133 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46797 * 325.00326 * 14 13 11 16 16 C 1.53005 * 109.46689 * 85.00137 * 14 13 11 17 17 C 1.52993 * 109.47163 * 204.99976 * 14 13 11 18 18 C 1.53001 * 109.47171 * 65.00229 * 17 14 13 19 19 C 1.53005 * 109.47392 * 179.97438 * 18 17 14 20 20 N 1.46502 * 109.47177 * 180.02562 * 19 18 17 21 21 C 1.36933 * 119.99679 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00142 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99641 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00037 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99796 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47189 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46934 * 120.00202 * 25 23 21 28 28 H 1.48497 * 109.47021 * 240.00066 * 25 23 21 29 29 H 1.09003 * 109.46940 * 299.99710 * 1 2 3 30 30 H 1.08997 * 109.47166 * 59.99162 * 1 2 3 31 31 H 1.08993 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46658 * 239.99993 * 2 1 3 33 33 H 1.08994 * 109.47203 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47016 * 300.00490 * 3 2 1 35 35 H 1.09003 * 109.46720 * 60.00155 * 3 2 1 36 36 H 1.08000 * 120.77577 * 359.97175 * 6 5 4 37 37 H 1.08007 * 120.27303 * 179.70758 * 7 6 5 38 38 H 1.07998 * 119.46337 * 180.02562 * 8 7 6 39 39 H 0.97002 * 120.00289 * 0.02562 * 13 11 10 40 40 H 1.08991 * 109.47271 * 299.99706 * 16 14 13 41 41 H 1.08998 * 109.47347 * 60.00526 * 16 14 13 42 42 H 1.09004 * 109.46710 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.47487 * 184.99856 * 17 14 13 44 44 H 1.09007 * 109.47640 * 305.00067 * 17 14 13 45 45 H 1.09002 * 109.47207 * 299.99716 * 18 17 14 46 46 H 1.08995 * 109.47245 * 59.99671 * 18 17 14 47 47 H 1.09002 * 109.46758 * 300.00047 * 19 18 17 48 48 H 1.08995 * 109.47148 * 59.99668 * 19 18 17 49 49 H 0.97000 * 119.99716 * 359.97438 * 20 19 18 50 50 H 0.96999 * 120.00131 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1195 -2.0237 1.0953 6 6 1.6761 -2.7128 -0.0318 7 6 1.8076 -4.0893 -0.0561 8 6 2.3771 -4.7395 1.0295 9 7 2.7936 -4.0685 2.0794 10 6 2.6897 -2.7458 2.1489 11 6 3.1728 -2.0334 3.3507 12 8 3.0792 -0.8234 3.4186 13 7 3.7161 -2.7257 4.3715 14 6 4.1954 -2.0196 5.5624 15 1 4.6140 -1.0566 5.2699 16 6 3.0289 -1.7968 6.5271 17 6 5.2746 -2.8567 6.2517 18 6 6.4927 -2.9746 5.3334 19 6 7.5723 -3.8112 6.0231 20 7 8.7389 -3.9236 5.1440 21 6 9.8379 -4.6313 5.5519 22 1 9.8446 -5.1069 6.5215 23 6 10.9431 -4.7381 4.7188 24 7 10.9344 -4.1597 3.5365 25 14 12.4421 -5.7041 5.2749 26 1 12.2006 -6.2542 6.6330 27 1 12.6919 -6.8196 4.3268 28 1 13.6251 -4.8072 5.3068 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.2358 -2.1847 -0.8646 37 1 1.4695 -4.6535 -0.9128 38 1 2.4804 -5.8143 1.0106 39 1 3.7905 -3.6913 4.3175 40 1 2.2601 -1.2005 6.0361 41 1 2.6103 -2.7598 6.8196 42 1 3.3854 -1.2711 7.4130 43 1 5.5680 -2.3746 7.1843 44 1 4.8825 -3.8513 6.4646 45 1 6.1994 -3.4567 4.4009 46 1 6.8849 -1.9802 5.1206 47 1 7.8655 -3.3287 6.9554 48 1 7.1804 -4.8057 6.2362 49 1 8.7327 -3.4966 4.2730 50 1 11.7068 -4.2341 2.9545 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717693552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:46 Heat of formation + Delta-G solvation = -65.635684 kcal Electronic energy + Delta-G solvation = -28836.627179 eV Core-core repulsion = 24863.160363 eV Total energy + Delta-G solvation = -3973.466816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04044 -40.44378 -39.46342 -37.91656 -36.49475 -34.34008 -34.20293 -33.54818 -32.36002 -31.32270 -30.62689 -28.25406 -27.25281 -25.94383 -24.97613 -24.58685 -22.67427 -22.29191 -21.98372 -21.43557 -19.55018 -19.13254 -18.81091 -17.99306 -17.12128 -16.76825 -16.70233 -16.27016 -15.98230 -15.82720 -15.47778 -15.41201 -15.26650 -15.19091 -14.90871 -14.50060 -14.36140 -13.96344 -13.78470 -13.45900 -13.44179 -13.33295 -13.18458 -13.15402 -13.01546 -12.84114 -12.80413 -12.40193 -12.22180 -12.05638 -12.02091 -11.87201 -11.78941 -11.73285 -11.50333 -11.24236 -10.95091 -10.81946 -10.59778 -10.07421 -9.48007 -9.01690 -7.96059 -5.25923 -0.36277 0.20843 1.46205 1.48094 1.58417 1.77165 2.03942 2.16994 2.55418 2.82902 3.22016 3.37363 3.54830 3.63079 3.72329 3.77480 3.92585 3.96925 4.03394 4.10221 4.11082 4.15073 4.28160 4.38261 4.48096 4.58200 4.64869 4.67946 4.73536 4.76608 4.81846 4.82388 4.85271 4.88335 4.91994 4.98191 4.99725 5.11156 5.18913 5.22668 5.29980 5.37219 5.41863 5.44220 5.49675 5.60039 6.26061 6.26182 6.47554 6.81932 7.24336 7.31154 8.07884 8.30782 9.28185 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.002383 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.852292 B =11746.823889 C =12448.329536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.057 3.943 3 C -0.147 4.147 4 O -0.298 6.298 5 C 0.127 3.873 6 C -0.176 4.176 7 C -0.087 4.087 8 C 0.050 3.950 9 N -0.440 5.440 10 C 0.000 4.000 11 C 0.565 3.435 12 O -0.557 6.557 13 N -0.700 5.700 14 C 0.142 3.858 15 H 0.065 0.935 16 C -0.152 4.152 17 C -0.108 4.108 18 C -0.112 4.112 19 C 0.151 3.849 20 N -0.751 5.751 21 C -0.246 4.246 22 H 0.078 0.922 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.979 3.021 26 H -0.264 1.264 27 H -0.291 1.291 28 H -0.293 1.293 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.176 0.824 37 H 0.188 0.812 38 H 0.194 0.806 39 H 0.413 0.587 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.023 0.977 48 H 0.025 0.975 49 H 0.370 0.630 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.681 3.959 -8.870 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 C -0.204 4.204 4 O -0.209 6.209 5 C 0.076 3.924 6 C -0.202 4.202 7 C -0.107 4.107 8 C -0.112 4.112 9 N -0.152 5.152 10 C -0.137 4.137 11 C 0.351 3.649 12 O -0.435 6.435 13 N -0.352 5.352 14 C 0.038 3.962 15 H 0.083 0.917 16 C -0.210 4.210 17 C -0.146 4.146 18 C -0.150 4.150 19 C 0.025 3.975 20 N -0.394 5.394 21 C -0.377 4.377 22 H 0.096 0.904 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.807 3.193 26 H -0.188 1.188 27 H -0.218 1.218 28 H -0.220 1.220 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.193 0.807 37 H 0.205 0.795 38 H 0.211 0.789 39 H 0.249 0.751 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.043 0.957 49 H 0.202 0.798 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -28.236 4.497 -7.735 29.620 hybrid contribution 0.799 -0.165 -1.077 1.351 sum -27.437 4.332 -8.812 29.141 Atomic orbital electron populations 1.22352 0.93251 1.03318 1.04078 1.22945 0.95777 0.94334 0.86755 1.21867 1.01460 0.93168 1.03875 1.86443 1.79509 1.15113 1.39824 1.20244 0.93014 0.84694 0.94453 1.22172 1.03816 0.96238 0.97996 1.22719 0.94172 0.93764 1.00033 1.23374 0.96818 1.02115 0.88940 1.67545 1.14057 1.05646 1.27909 1.20552 1.06869 0.90340 0.95932 1.18011 0.77801 0.86371 0.82718 1.90774 1.57406 1.14313 1.81046 1.45922 1.60638 1.11634 1.17006 1.21045 0.94682 0.95827 0.84654 0.91675 1.22080 0.97327 1.02561 0.99026 1.21746 0.92751 1.01391 0.98703 1.21577 0.95329 0.99150 0.98975 1.20844 0.86656 0.96985 0.92978 1.42678 1.14620 1.63126 1.18936 1.19735 0.93563 1.23919 1.00507 0.90364 1.25676 1.01819 1.03004 0.96827 1.69852 1.31206 1.50628 1.10720 0.84997 0.78941 0.77558 0.77805 1.18771 1.21841 1.21979 0.92597 0.88092 0.91736 0.89166 0.93073 0.87453 0.92510 0.80668 0.79495 0.78942 0.75055 0.93981 0.91082 0.89789 0.88554 0.89568 0.93097 0.93590 0.95889 0.95660 0.79841 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.20 71.98 0.66 -1.33 16 2 C 0.06 0.93 2.85 30.59 0.09 1.02 16 3 C -0.15 -2.28 9.56 71.98 0.69 -1.60 16 4 O -0.30 -7.88 7.86 -68.64 -0.54 -8.42 16 5 C 0.13 3.14 6.62 22.93 0.15 3.30 16 6 C -0.18 -2.69 8.35 22.55 0.19 -2.51 16 7 C -0.09 -1.03 10.10 22.41 0.23 -0.81 16 8 C 0.05 0.83 11.17 84.89 0.95 1.78 16 9 N -0.44 -10.98 9.54 -184.64 -1.76 -12.74 16 10 C 0.00 -0.01 6.76 41.93 0.28 0.27 16 11 C 0.56 18.74 7.77 86.78 0.67 19.41 16 12 O -0.56 -21.65 14.80 17.10 0.25 -21.40 16 13 N -0.70 -20.11 4.52 -445.42 -2.01 -22.12 16 14 C 0.14 3.79 2.57 44.99 0.12 3.91 16 15 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 16 C -0.15 -3.34 9.48 71.98 0.68 -2.66 16 17 C -0.11 -2.74 4.75 30.59 0.15 -2.59 16 18 C -0.11 -3.92 5.22 30.60 0.16 -3.76 16 19 C 0.15 6.35 6.26 86.38 0.54 6.89 16 20 N -0.75 -40.87 5.60 -343.44 -1.92 -42.80 16 21 C -0.25 -14.36 9.99 84.04 0.84 -13.52 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 24 N -0.97 -62.13 13.06 21.65 0.28 -61.85 16 25 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 28 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.69 6.99 -2.39 -0.02 0.67 16 32 H 0.09 1.08 6.32 -2.38 -0.02 1.07 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.18 1.51 5.62 -2.91 -0.02 1.49 16 37 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 38 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.41 11.01 7.93 -92.71 -0.73 10.28 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.05 1.88 7.75 -2.39 -0.02 1.87 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.37 21.66 7.67 -92.71 -0.71 20.95 16 50 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -81.41 410.37 2.68 -78.73 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.50 Total: 37.71 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.86 Total: 3.41 kcal Atomic # 7 Polarization: -134.09 SS G_CDS: -5.41 Total: -139.51 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.29 Total: -29.82 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -81.41 2.68 -78.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717693552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds