Wall clock time and date at job start Tue Mar 31 2020 19:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47173 * 60.00435 * 9 7 5 11 11 H 1.48497 * 109.47172 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47132 * 300.00314 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09002 * 110.88658 * 179.29983 * 13 2 1 15 15 C 1.55158 * 111.00472 * 303.18111 * 13 2 1 16 16 C 1.54375 * 102.91753 * 153.54740 * 15 13 2 17 17 N 1.47016 * 107.29048 * 337.85829 * 16 15 13 18 18 C 1.34774 * 125.64922 * 178.94216 * 17 16 15 19 19 O 1.21614 * 119.99742 * 179.97438 * 18 17 16 20 20 C 1.47415 * 120.00273 * 359.96362 * 18 17 16 21 21 C 1.36089 * 126.45502 * 179.68916 * 20 18 17 22 22 O 1.34255 * 106.95152 * 179.90277 * 21 20 18 23 23 C 1.34042 * 108.22862 * 0.36170 * 22 21 20 24 24 C 1.50702 * 125.38337 * 179.81008 * 23 22 21 25 25 C 1.53003 * 109.47216 * 239.96011 * 24 23 22 26 26 C 1.53007 * 109.46559 * 359.95369 * 24 23 22 27 27 C 1.52999 * 109.47546 * 119.95570 * 24 23 22 28 28 N 1.29935 * 109.24503 * 359.76879 * 23 22 21 29 29 C 1.47425 * 108.70179 * 358.91197 * 17 16 15 30 30 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 33 33 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 34 34 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.72222 * 271.93731 * 15 13 2 36 36 H 1.08993 * 110.72141 * 35.21676 * 15 13 2 37 37 H 1.08997 * 109.89920 * 218.42420 * 16 15 13 38 38 H 1.08995 * 109.97465 * 97.34680 * 16 15 13 39 39 H 1.08005 * 126.52252 * 0.02996 * 21 20 18 40 40 H 1.09001 * 109.47074 * 59.99303 * 25 24 23 41 41 H 1.09001 * 109.47026 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47156 * 299.99675 * 25 24 23 43 43 H 1.08999 * 109.46766 * 60.00721 * 26 24 23 44 44 H 1.09006 * 109.46729 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.47382 * 300.00483 * 26 24 23 46 46 H 1.09000 * 109.46799 * 60.00341 * 27 24 23 47 47 H 1.08998 * 109.46669 * 180.02562 * 27 24 23 48 48 H 1.08997 * 109.46721 * 299.99871 * 27 24 23 49 49 H 1.08998 * 110.36780 * 265.28479 * 29 17 16 50 50 H 1.09005 * 110.45907 * 143.01153 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 3.7616 1.3972 -4.9269 11 1 3.3216 -0.6428 -6.1624 12 1 1.4870 0.8108 -5.5294 13 6 2.0399 -0.7212 1.2493 14 1 3.1296 -0.7455 1.2665 15 6 1.4779 -0.0655 2.5383 16 6 1.4923 -1.2296 3.5522 17 7 1.4917 -2.4810 2.7806 18 6 1.5225 -3.7242 3.3002 19 8 1.5181 -4.6916 2.5631 20 6 1.5616 -3.9115 4.7619 21 6 1.5892 -5.0999 5.4244 22 8 1.6225 -4.8160 6.7362 23 6 1.6075 -3.4831 6.8773 24 6 1.6303 -2.7443 8.1906 25 6 0.3721 -1.8823 8.3128 26 6 1.6722 -3.7516 9.3416 27 6 2.8697 -1.8492 8.2509 28 7 1.5711 -2.9285 5.7028 29 6 1.4512 -2.1508 1.3444 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1525 34 1 3.2623 -2.3926 -4.2382 35 1 2.1251 0.7455 2.8722 36 1 0.4611 0.2925 2.3771 37 1 0.6049 -1.1829 4.1833 38 1 2.3891 -1.1749 4.1692 39 1 1.5870 -6.0840 4.9795 40 1 -0.5108 -2.5201 8.2698 41 1 0.3884 -1.3483 9.2629 42 1 0.3422 -1.1648 7.4928 43 1 2.5685 -4.3656 9.2546 44 1 1.6882 -3.2172 10.2916 45 1 0.7892 -4.3893 9.2986 46 1 2.8398 -1.1316 7.4309 47 1 2.8862 -1.3152 9.2010 48 1 3.7659 -2.4633 8.1639 49 1 0.4235 -2.1628 0.9812 50 1 2.0621 -2.8513 0.7750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724533106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:03 Heat of formation + Delta-G solvation = -5.491682 kcal Electronic energy + Delta-G solvation = -29574.201045 eV Core-core repulsion = 25603.342268 eV Total energy + Delta-G solvation = -3970.858777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.68592 -39.87437 -37.84898 -37.38077 -35.21967 -34.82497 -32.43920 -30.52713 -30.03992 -28.66560 -27.88311 -27.75760 -27.67223 -25.08809 -23.93875 -23.48690 -22.69731 -21.63251 -20.50645 -19.12289 -18.75442 -17.74094 -17.14422 -17.02525 -16.62522 -16.08994 -15.67823 -15.20587 -14.70140 -14.62107 -14.46876 -14.29980 -13.80224 -13.67922 -13.45252 -13.22663 -12.84655 -12.81360 -12.74101 -12.60222 -12.15324 -12.13316 -12.08899 -11.99752 -11.68794 -11.60840 -11.43605 -11.31876 -11.06157 -10.92957 -10.81094 -10.75634 -10.51524 -10.22738 -10.21144 -10.07711 -9.81580 -9.57467 -9.23441 -8.87355 -8.38736 -6.92986 -5.71835 -3.01201 0.94942 1.85458 2.29050 2.99486 3.30522 3.46579 3.50679 3.51148 3.52241 4.26422 4.35465 4.36732 4.57764 4.63952 4.70941 4.84841 5.00327 5.10050 5.15411 5.16128 5.17303 5.28902 5.35086 5.39508 5.43796 5.48972 5.50040 5.57653 5.65124 5.67423 5.78356 5.80575 5.80768 5.88075 5.89019 5.95113 6.05639 6.14300 6.22876 6.32079 6.38610 6.52319 6.58694 6.75244 6.87635 7.14832 7.28099 7.62879 7.73136 8.18920 8.46271 9.57166 10.14746 10.49174 11.50575 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.002352 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.004770 B =11903.002234 C =12566.900701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.185 3.815 3 H 0.052 0.948 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.134 4.134 16 C 0.116 3.884 17 N -0.598 5.598 18 C 0.608 3.392 19 O -0.537 6.537 20 C -0.061 4.061 21 C 0.005 3.995 22 O -0.194 6.194 23 C 0.201 3.799 24 C 0.033 3.967 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.140 4.140 28 N -0.450 5.450 29 C 0.109 3.891 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.230 0.770 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -0.872 29.633 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.075 3.925 3 H 0.070 0.930 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.102 0.898 15 C -0.172 4.172 16 C -0.006 4.006 17 N -0.330 5.330 18 C 0.395 3.605 19 O -0.415 6.415 20 C -0.181 4.181 21 C -0.068 4.068 22 O -0.080 6.080 23 C -0.008 4.008 24 C 0.031 3.969 25 C -0.197 4.197 26 C -0.205 4.205 27 C -0.198 4.198 28 N -0.179 5.179 29 C -0.012 4.012 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.246 0.754 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.834 -0.699 29.003 29.263 hybrid contribution 0.196 -0.705 -0.970 1.214 sum -3.638 -1.403 28.033 28.303 Atomic orbital electron populations 1.22616 0.99474 1.01022 1.00012 1.20076 0.91823 0.95309 0.85339 0.92992 1.42443 1.78148 1.10688 1.05353 1.19180 1.36526 0.93832 0.87491 0.91232 1.24749 1.02188 0.95972 0.98065 1.69658 1.50643 1.08646 1.29041 0.86285 0.77723 0.78580 0.83675 1.21330 1.21765 1.21336 1.22693 1.00620 0.93672 0.95190 0.89819 1.22892 1.02641 0.96941 0.94756 1.22033 1.02278 0.82536 0.93801 1.48295 1.70819 1.05054 1.08850 1.16354 0.77373 0.82398 0.84338 1.90854 1.51771 1.39142 1.59746 1.21789 1.11331 0.89758 0.95205 1.25277 1.00992 1.01321 0.79240 1.84375 1.69149 1.27366 1.27128 1.26305 1.00222 0.77568 0.96747 1.19161 0.98707 0.93944 0.85051 1.21912 0.95022 0.99539 1.03271 1.21928 1.03096 0.98499 0.96990 1.21914 0.95245 0.99274 1.03347 1.70840 1.17191 1.32076 0.97822 1.22530 1.02304 0.96867 0.79545 0.92749 0.93132 0.94080 0.78185 0.93457 0.90232 0.89916 0.91282 0.91123 0.75364 0.92199 0.90866 0.90941 0.91761 0.90876 0.91781 0.90928 0.90865 0.92169 0.90257 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.85 37.16 0.33 -2.69 16 2 C 0.18 3.56 2.84 -67.93 -0.19 3.37 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -18.04 5.07 -53.43 -0.27 -18.31 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 9 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.10 -1.67 3.07 -88.47 -0.27 -1.94 16 14 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 15 C -0.13 -1.69 6.31 -24.87 -0.16 -1.85 16 16 C 0.12 1.51 5.53 -3.04 -0.02 1.49 16 17 N -0.60 -9.56 3.33 -171.76 -0.57 -10.13 16 18 C 0.61 10.21 7.85 -12.53 -0.10 10.11 16 19 O -0.54 -10.61 17.15 5.27 0.09 -10.52 16 20 C -0.06 -0.83 6.83 -83.02 -0.57 -1.40 16 21 C 0.01 0.06 11.95 29.96 0.36 0.42 16 22 O -0.19 -1.99 10.11 6.54 0.07 -1.93 16 23 C 0.20 2.01 6.44 -13.08 -0.08 1.92 16 24 C 0.03 0.22 0.99 -155.65 -0.15 0.06 16 25 C -0.14 -0.81 8.46 37.16 0.31 -0.49 16 26 C -0.15 -0.75 8.01 37.16 0.30 -0.45 16 27 C -0.14 -0.83 8.46 37.16 0.31 -0.52 16 28 N -0.45 -5.43 8.83 -7.66 -0.07 -5.50 16 29 C 0.11 1.91 5.68 -2.53 -0.01 1.89 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.92 6.04 -51.93 -0.31 0.60 16 32 H 0.04 0.59 6.07 -51.93 -0.32 0.28 16 33 H 0.38 10.28 7.06 -40.82 -0.29 9.99 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.00 5.74 -51.93 -0.30 0.70 16 37 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 38 H 0.07 0.90 7.63 -51.93 -0.40 0.51 16 39 H 0.23 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 1.43 5.66 -51.93 -0.29 1.13 16 50 H 0.08 1.67 7.79 -51.93 -0.40 1.26 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -33.47 398.82 -7.41 -40.88 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.17 Total: 7.11 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.19 Total: 2.67 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.19 Total: -61.79 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.16 Total: -12.44 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.47 -7.41 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724533106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.386 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds