Wall clock time and date at job start Tue Mar 31 2020 19:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47173 * 60.00435 * 9 7 5 11 11 H 1.48497 * 109.47172 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47132 * 300.00314 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09002 * 110.88658 * 179.29983 * 13 2 1 15 15 C 1.55158 * 111.00472 * 303.18111 * 13 2 1 16 16 C 1.54375 * 102.91753 * 153.54740 * 15 13 2 17 17 N 1.47016 * 107.29048 * 337.85829 * 16 15 13 18 18 C 1.34774 * 125.64922 * 178.94216 * 17 16 15 19 19 O 1.21614 * 119.99742 * 179.97438 * 18 17 16 20 20 C 1.47415 * 120.00273 * 359.96362 * 18 17 16 21 21 C 1.36089 * 126.45502 * 179.68916 * 20 18 17 22 22 O 1.34255 * 106.95152 * 179.90277 * 21 20 18 23 23 C 1.34042 * 108.22862 * 0.36170 * 22 21 20 24 24 C 1.50702 * 125.38337 * 179.81008 * 23 22 21 25 25 C 1.53003 * 109.47216 * 239.96011 * 24 23 22 26 26 C 1.53007 * 109.46559 * 359.95369 * 24 23 22 27 27 C 1.52999 * 109.47546 * 119.95570 * 24 23 22 28 28 N 1.29935 * 109.24503 * 359.76879 * 23 22 21 29 29 C 1.47425 * 108.70179 * 358.91197 * 17 16 15 30 30 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 33 33 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 34 34 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.72222 * 271.93731 * 15 13 2 36 36 H 1.08993 * 110.72141 * 35.21676 * 15 13 2 37 37 H 1.08997 * 109.89920 * 218.42420 * 16 15 13 38 38 H 1.08995 * 109.97465 * 97.34680 * 16 15 13 39 39 H 1.08005 * 126.52252 * 0.02996 * 21 20 18 40 40 H 1.09001 * 109.47074 * 59.99303 * 25 24 23 41 41 H 1.09001 * 109.47026 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47156 * 299.99675 * 25 24 23 43 43 H 1.08999 * 109.46766 * 60.00721 * 26 24 23 44 44 H 1.09006 * 109.46729 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.47382 * 300.00483 * 26 24 23 46 46 H 1.09000 * 109.46799 * 60.00341 * 27 24 23 47 47 H 1.08998 * 109.46669 * 180.02562 * 27 24 23 48 48 H 1.08997 * 109.46721 * 299.99871 * 27 24 23 49 49 H 1.08998 * 110.36780 * 265.28479 * 29 17 16 50 50 H 1.09005 * 110.45907 * 143.01153 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 3.7616 1.3972 -4.9269 11 1 3.3216 -0.6428 -6.1624 12 1 1.4870 0.8108 -5.5294 13 6 2.0399 -0.7212 1.2493 14 1 3.1296 -0.7455 1.2665 15 6 1.4779 -0.0655 2.5383 16 6 1.4923 -1.2296 3.5522 17 7 1.4917 -2.4810 2.7806 18 6 1.5225 -3.7242 3.3002 19 8 1.5181 -4.6916 2.5631 20 6 1.5616 -3.9115 4.7619 21 6 1.5892 -5.0999 5.4244 22 8 1.6225 -4.8160 6.7362 23 6 1.6075 -3.4831 6.8773 24 6 1.6303 -2.7443 8.1906 25 6 0.3721 -1.8823 8.3128 26 6 1.6722 -3.7516 9.3416 27 6 2.8697 -1.8492 8.2509 28 7 1.5711 -2.9285 5.7028 29 6 1.4512 -2.1508 1.3444 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1525 34 1 3.2623 -2.3926 -4.2382 35 1 2.1251 0.7455 2.8722 36 1 0.4611 0.2925 2.3771 37 1 0.6049 -1.1829 4.1833 38 1 2.3891 -1.1749 4.1692 39 1 1.5870 -6.0840 4.9795 40 1 -0.5108 -2.5201 8.2698 41 1 0.3884 -1.3483 9.2629 42 1 0.3422 -1.1648 7.4928 43 1 2.5685 -4.3656 9.2546 44 1 1.6882 -3.2172 10.2916 45 1 0.7892 -4.3893 9.2986 46 1 2.8398 -1.1316 7.4309 47 1 2.8862 -1.3152 9.2010 48 1 3.7659 -2.4633 8.1639 49 1 0.4235 -2.1628 0.9812 50 1 2.0621 -2.8513 0.7750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724533106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:02 Heat of formation + Delta-G solvation = -28.365148 kcal Electronic energy + Delta-G solvation = -29575.192913 eV Core-core repulsion = 25603.342268 eV Total energy + Delta-G solvation = -3971.850645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.55250 -41.18075 -39.22456 -37.92424 -36.77906 -35.86182 -34.27373 -32.08344 -30.97371 -30.22049 -29.19757 -28.22833 -28.18640 -26.47679 -25.68849 -24.31433 -23.84895 -23.01018 -21.42691 -20.25452 -20.03674 -19.26929 -18.57718 -17.95844 -17.64364 -17.45697 -16.70020 -16.50525 -16.12406 -15.80206 -15.45560 -15.24933 -15.02012 -14.91716 -14.78466 -14.44896 -14.33712 -13.91477 -13.58908 -13.52172 -13.22775 -13.10898 -13.07127 -12.74158 -12.70651 -12.58493 -12.57302 -12.41748 -12.27645 -12.21349 -12.15277 -11.97607 -11.95010 -11.76445 -11.61019 -11.43158 -11.38956 -11.33139 -10.89450 -10.17169 -9.66991 -8.99934 -7.91326 -5.20149 -0.00138 0.92312 1.47138 1.48027 1.50516 1.56421 1.81503 2.12080 2.57499 2.68129 3.34042 3.41911 3.63141 3.66813 3.67651 3.90568 3.91522 3.94582 4.06752 4.14648 4.30043 4.38783 4.41926 4.48695 4.53448 4.62019 4.64772 4.75892 4.77832 4.82001 4.87457 4.87954 4.94821 4.95652 4.98235 4.98516 5.07659 5.10045 5.14274 5.21830 5.30245 5.32772 5.37824 5.40180 5.41374 5.55033 5.67011 6.30197 6.30906 6.45882 6.90728 7.35685 8.13161 8.34792 9.32240 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.002352 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.004770 B =11903.002234 C =12566.900701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 H 0.058 0.942 4 N -0.740 5.740 5 C -0.234 4.234 6 H 0.080 0.920 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.973 3.027 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.278 1.278 13 C -0.093 4.093 14 H 0.070 0.930 15 C -0.118 4.118 16 C 0.121 3.879 17 N -0.601 5.601 18 C 0.602 3.398 19 O -0.581 6.581 20 C -0.092 4.092 21 C 0.023 3.977 22 O -0.190 6.190 23 C 0.207 3.793 24 C 0.031 3.969 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.138 4.138 28 N -0.463 5.463 29 C 0.114 3.886 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 1.215 32.711 33.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.076 0.924 4 N -0.380 5.380 5 C -0.366 4.366 6 H 0.098 0.902 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.802 3.198 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.204 1.204 13 C -0.113 4.113 14 H 0.088 0.912 15 C -0.156 4.156 16 C 0.000 4.000 17 N -0.332 5.332 18 C 0.391 3.609 19 O -0.462 6.462 20 C -0.211 4.211 21 C -0.051 4.051 22 O -0.076 6.076 23 C -0.002 4.002 24 C 0.030 3.970 25 C -0.195 4.195 26 C -0.202 4.202 27 C -0.196 4.196 28 N -0.192 5.192 29 C -0.008 4.008 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.267 0.733 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.117 0.883 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.541 1.469 32.134 32.486 hybrid contribution 0.388 -1.345 -1.777 2.263 sum -4.153 0.123 30.356 30.639 Atomic orbital electron populations 1.22465 0.97670 1.00713 1.01212 1.20325 0.92897 0.95221 0.84381 0.92382 1.42709 1.78460 1.10243 1.06582 1.19626 1.34319 0.94275 0.88366 0.90200 1.25588 1.03282 0.96862 1.01642 1.69844 1.52804 1.10421 1.29437 0.85215 0.77966 0.77248 0.79366 1.20209 1.22696 1.20398 1.22492 0.99768 0.93044 0.96013 0.91183 1.22899 1.03714 0.97149 0.91856 1.22151 1.03142 0.81083 0.93654 1.48392 1.70393 1.06054 1.08324 1.16818 0.76457 0.82001 0.85628 1.90815 1.53808 1.40399 1.61154 1.21458 1.14400 0.91352 0.93841 1.25668 0.98604 1.01504 0.79356 1.84424 1.68953 1.27723 1.26475 1.27166 0.98200 0.77428 0.97442 1.19466 0.99556 0.94260 0.83749 1.21918 0.94210 0.99144 1.04199 1.21939 1.02760 0.98240 0.97303 1.21922 0.94485 0.98868 1.04279 1.70777 1.18349 1.31931 0.98154 1.22301 1.01160 0.96843 0.80494 0.94369 0.94220 0.89987 0.79876 0.94282 0.87484 0.88481 0.89996 0.90606 0.73335 0.92639 0.88337 0.92071 0.92183 0.88513 0.92052 0.92131 0.88304 0.92811 0.90833 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 8.85 71.98 0.64 -4.83 16 2 C 0.18 6.84 2.84 44.99 0.13 6.96 16 3 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 4 N -0.74 -37.65 5.07 -322.94 -1.64 -39.29 16 5 C -0.23 -13.05 9.93 84.03 0.83 -12.22 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 7 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 8 N -0.97 -61.87 13.06 21.65 0.28 -61.59 16 9 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C -0.09 -3.03 3.07 -9.40 -0.03 -3.06 16 14 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 15 C -0.12 -2.67 6.31 31.80 0.20 -2.47 16 16 C 0.12 2.95 5.53 86.75 0.48 3.43 16 17 N -0.60 -19.47 3.33 -815.59 -2.71 -22.18 16 18 C 0.60 20.85 7.85 86.66 0.68 21.53 16 19 O -0.58 -24.21 17.15 -4.07 -0.07 -24.28 16 20 C -0.09 -2.50 6.83 40.40 0.28 -2.22 16 21 C 0.02 0.50 11.95 67.32 0.80 1.30 16 22 O -0.19 -3.62 10.11 0.48 0.00 -3.61 16 23 C 0.21 3.82 6.44 88.39 0.57 4.39 16 24 C 0.03 0.33 0.99 -52.92 -0.05 0.28 16 25 C -0.14 -1.21 8.46 71.98 0.61 -0.60 16 26 C -0.14 -1.06 8.01 71.98 0.58 -0.48 16 27 C -0.14 -1.29 8.46 71.98 0.61 -0.68 16 28 N -0.46 -10.70 8.83 -293.04 -2.59 -13.28 16 29 C 0.11 4.17 5.68 86.85 0.49 4.66 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.42 6.04 -2.39 -0.01 1.41 16 32 H 0.08 2.10 6.07 -2.39 -0.01 2.08 16 33 H 0.37 20.77 7.06 -92.71 -0.65 20.11 16 34 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 1.95 5.74 -2.39 -0.01 1.94 16 37 H 0.08 1.83 7.75 -2.39 -0.02 1.82 16 38 H 0.08 1.80 7.63 -2.39 -0.02 1.78 16 39 H 0.25 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 2.75 5.66 -2.39 -0.01 2.74 16 50 H 0.04 1.93 7.79 -2.38 -0.02 1.91 16 Total: -1.00 -75.74 398.82 2.87 -72.86 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.29 Total: 30.58 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.28 Total: 11.66 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -6.66 Total: -136.34 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.07 Total: -27.89 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -75.74 2.87 -72.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724533106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.499 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds