Wall clock time and date at job start Tue Mar 31 2020 19:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46655 * 2 1 4 4 N 1.46501 * 109.46818 * 119.99942 * 2 1 3 5 5 C 1.36939 * 119.99876 * 274.99495 * 4 2 1 6 6 H 1.07997 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99672 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00465 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99720 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46847 * 120.00475 * 9 7 5 12 12 H 1.48500 * 109.46980 * 240.00145 * 9 7 5 13 13 C 1.53001 * 109.46827 * 239.99900 * 2 1 3 14 14 H 1.08997 * 110.92039 * 296.09272 * 13 2 1 15 15 C 1.55162 * 111.00465 * 60.00465 * 13 2 1 16 16 C 1.54323 * 102.94064 * 153.57335 * 15 13 2 17 17 N 1.47021 * 107.27515 * 337.80391 * 16 15 13 18 18 C 1.34774 * 125.65144 * 178.89878 * 17 16 15 19 19 O 1.21612 * 120.00070 * 180.02562 * 18 17 16 20 20 C 1.47419 * 120.00050 * 0.02562 * 18 17 16 21 21 N 1.36070 * 126.44585 * 355.10859 * 20 18 17 22 22 C 1.29931 * 108.47428 * 180.02562 * 21 20 18 23 23 O 1.34050 * 109.24654 * 359.97438 * 22 21 20 24 24 C 1.34260 * 108.22598 * 359.73606 * 23 22 21 25 25 C 1.50694 * 126.52925 * 180.26389 * 24 23 22 26 26 C 1.52992 * 109.47520 * 242.11423 * 25 24 23 27 27 C 1.53000 * 109.46890 * 2.11573 * 25 24 23 28 28 C 1.53000 * 109.47013 * 122.10985 * 25 24 23 29 29 C 1.47433 * 108.69828 * 358.94086 * 17 16 15 30 30 H 1.09002 * 109.47043 * 60.00355 * 1 2 3 31 31 H 1.09000 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47236 * 299.99899 * 1 2 3 33 33 H 0.96995 * 119.99992 * 95.00397 * 4 2 1 34 34 H 0.96998 * 120.00623 * 179.97438 * 8 7 5 35 35 H 1.09002 * 110.71332 * 271.93527 * 15 13 2 36 36 H 1.09001 * 110.72318 * 35.20431 * 15 13 2 37 37 H 1.09002 * 109.88235 * 97.22334 * 16 15 13 38 38 H 1.09003 * 109.87862 * 218.38638 * 16 15 13 39 39 H 1.08007 * 125.37888 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.46988 * 68.54045 * 26 25 24 41 41 H 1.08999 * 109.47366 * 188.53980 * 26 25 24 42 42 H 1.09000 * 109.47135 * 308.54399 * 26 25 24 43 43 H 1.09003 * 109.47568 * 59.99532 * 27 25 24 44 44 H 1.09001 * 109.47148 * 180.02562 * 27 25 24 45 45 H 1.09003 * 109.47465 * 299.99898 * 27 25 24 46 46 H 1.09000 * 109.47317 * 51.65394 * 28 25 24 47 47 H 1.09007 * 109.46923 * 171.65056 * 28 25 24 48 48 H 1.08997 * 109.47665 * 291.64794 * 28 25 24 49 49 H 1.09003 * 110.36602 * 265.28870 * 29 17 16 50 50 H 1.09002 * 110.36207 * 142.96740 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0074 2.3758 6 1 1.8920 1.0404 2.4243 7 6 2.6113 -0.6619 3.5092 8 7 2.9242 -1.9390 3.4502 9 14 2.7891 0.2699 5.1185 10 1 2.3743 1.6820 4.9213 11 1 1.9279 -0.3588 6.1522 12 1 4.2058 0.2268 5.5615 13 6 2.0400 -0.7213 -1.2493 14 1 1.7475 -1.7712 -1.2391 15 6 1.5426 -0.0177 -2.5397 16 6 2.6250 -0.3893 -3.5750 17 7 3.8428 -0.7366 -2.8280 18 6 5.0094 -1.1378 -3.3705 19 8 5.9553 -1.4006 -2.6526 20 6 5.1391 -1.2583 -4.8340 21 7 4.1471 -1.0896 -5.7499 22 6 4.6450 -1.2771 -6.9353 23 8 5.9492 -1.5667 -6.8260 24 6 6.2747 -1.5530 -5.5236 25 6 7.6371 -1.8179 -4.9366 26 6 7.5731 -3.0529 -4.0359 27 6 8.6403 -2.0617 -6.0659 28 6 8.0814 -0.6079 -4.1123 29 6 3.5759 -0.5741 -1.3872 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2475 -2.3963 4.2422 35 1 0.5704 -0.4078 -2.8412 36 1 1.4989 1.0621 -2.3978 37 1 2.2955 -1.2444 -4.1651 38 1 2.8206 0.4612 -4.2281 39 1 4.0949 -1.2101 -7.8624 40 1 7.4058 -3.9399 -4.6469 41 1 8.5133 -3.1569 -3.4944 42 1 6.7546 -2.9419 -3.3247 43 1 8.6859 -1.1818 -6.7077 44 1 9.6256 -2.2538 -5.6413 45 1 8.3238 -2.9237 -6.6532 46 1 7.2967 -0.3431 -3.4037 47 1 8.9938 -0.8537 -3.5689 48 1 8.2703 0.2350 -4.7770 49 1 3.8942 0.4128 -1.0513 50 1 4.0842 -1.3519 -0.8173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724554970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:09 Heat of formation + Delta-G solvation = 1.477771 kcal Electronic energy + Delta-G solvation = -30156.694243 eV Core-core repulsion = 26186.137684 eV Total energy + Delta-G solvation = -3970.556559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.68979 -39.89403 -38.09102 -36.79869 -35.19315 -34.89248 -32.43195 -30.57758 -29.87849 -28.57095 -28.11403 -27.47766 -27.33386 -24.85735 -23.86220 -23.12365 -22.51741 -21.45498 -20.28498 -19.59993 -19.17127 -17.83881 -17.04903 -16.95506 -16.41017 -16.01987 -15.50140 -15.17009 -14.89504 -14.62141 -14.31362 -13.99631 -13.73743 -13.58397 -13.56826 -13.00352 -12.81671 -12.63273 -12.50522 -12.26357 -12.12817 -12.02902 -11.86333 -11.69091 -11.51605 -11.35696 -11.21553 -11.19255 -11.13930 -10.86720 -10.72302 -10.64485 -10.49641 -10.46879 -10.14470 -9.85369 -9.73677 -9.58818 -9.11372 -8.88503 -8.36930 -6.92624 -5.72640 -3.01462 0.96492 1.90129 2.32138 3.05313 3.27544 3.46046 3.51558 3.53845 3.83338 4.24282 4.46442 4.60966 4.71024 4.72868 4.84489 4.88350 5.03322 5.13972 5.30358 5.39079 5.46761 5.47809 5.50096 5.60015 5.63269 5.70065 5.73300 5.82650 5.83653 5.84309 5.88811 5.96198 5.98485 6.00829 6.03301 6.19634 6.20596 6.28464 6.36086 6.38292 6.44220 6.52540 6.61028 6.68639 6.89241 7.11024 7.26177 7.65087 7.74094 8.22509 8.45429 9.56913 10.14043 10.48614 11.49955 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.002921 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.203652 B = 9584.413820 C =10985.499222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.101 4.101 14 H 0.081 0.919 15 C -0.127 4.127 16 C 0.114 3.886 17 N -0.600 5.600 18 C 0.605 3.395 19 O -0.520 6.520 20 C -0.068 4.068 21 N -0.457 5.457 22 C 0.163 3.837 23 O -0.197 6.197 24 C 0.056 3.944 25 C 0.023 3.977 26 C -0.154 4.154 27 C -0.145 4.145 28 C -0.154 4.154 29 C 0.120 3.880 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.253 0.747 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 1.225 -24.861 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.121 4.121 14 H 0.099 0.901 15 C -0.166 4.166 16 C -0.009 4.009 17 N -0.331 5.331 18 C 0.394 3.606 19 O -0.399 6.399 20 C -0.188 4.188 21 N -0.186 5.186 22 C -0.065 4.065 23 O -0.083 6.083 24 C -0.001 4.001 25 C 0.022 3.978 26 C -0.211 4.211 27 C -0.202 4.202 28 C -0.210 4.210 29 C -0.001 4.001 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.980 1.349 -24.243 24.786 hybrid contribution 0.520 -0.013 0.413 0.664 sum 5.500 1.336 -23.829 24.492 Atomic orbital electron populations 1.22440 0.99094 1.00882 0.99974 1.20149 0.91908 0.95130 0.85339 0.93336 1.42436 1.78149 1.10714 1.05281 1.19244 1.36400 0.93823 0.87270 0.91202 1.24722 1.02236 0.95944 0.97995 1.69665 1.50942 1.08635 1.28724 0.86164 0.77297 0.78791 0.84221 1.20611 1.21989 1.21911 1.22665 0.93578 1.00765 0.95122 0.90076 1.22744 0.97899 1.01305 0.94613 1.22058 0.83988 1.00688 0.94170 1.48341 1.11191 1.64538 1.09038 1.16298 0.82101 0.77815 0.84394 1.90699 1.37158 1.50864 1.61157 1.21424 0.89934 1.12152 0.95297 1.70860 1.31394 1.17149 0.99185 1.28024 0.78886 1.00310 0.99282 1.84363 1.29114 1.67360 1.27489 1.23894 0.97952 0.98486 0.79779 1.19241 0.84921 0.98656 0.94949 1.22200 1.05279 0.93850 0.99759 1.21936 0.98897 1.02050 0.97334 1.22184 1.03618 0.95001 1.00227 1.22333 0.96175 1.02782 0.78826 0.94325 0.93525 0.92822 0.78275 0.93605 0.90145 0.90580 0.90871 0.91495 0.73179 0.93332 0.91267 0.88431 0.92317 0.91324 0.92257 0.88777 0.91192 0.93316 0.90942 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.27 37.16 0.34 -2.47 16 2 C 0.19 3.50 2.43 -67.93 -0.16 3.33 16 3 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 4 N -0.72 -17.65 4.97 -53.42 -0.27 -17.92 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 9 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 C -0.10 -1.62 2.65 -88.47 -0.23 -1.85 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -1.58 5.29 -24.89 -0.13 -1.72 16 16 C 0.11 1.46 5.53 -3.07 -0.02 1.45 16 17 N -0.60 -9.30 3.33 -171.78 -0.57 -9.87 16 18 C 0.61 9.68 7.20 -12.52 -0.09 9.59 16 19 O -0.52 -9.14 10.52 5.27 0.06 -9.09 16 20 C -0.07 -0.93 6.61 -83.02 -0.55 -1.48 16 21 N -0.46 -5.37 8.86 -11.48 -0.10 -5.47 16 22 C 0.16 1.37 13.19 51.96 0.69 2.05 16 23 O -0.20 -1.99 10.19 6.50 0.07 -1.92 16 24 C 0.06 0.67 5.73 -35.08 -0.20 0.47 16 25 C 0.02 0.25 0.75 -155.67 -0.12 0.14 16 26 C -0.15 -1.81 8.19 37.15 0.30 -1.51 16 27 C -0.14 -1.23 8.05 37.16 0.30 -0.93 16 28 C -0.15 -1.77 8.17 37.16 0.30 -1.47 16 29 C 0.12 2.07 6.23 -2.52 -0.02 2.05 16 30 H 0.04 0.54 7.28 -51.93 -0.38 0.16 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 38 H 0.07 0.82 7.86 -51.93 -0.41 0.42 16 39 H 0.25 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.07 0.73 8.07 -51.93 -0.42 0.32 16 42 H 0.10 1.44 4.72 -51.93 -0.24 1.19 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 1.35 4.57 -51.93 -0.24 1.12 16 47 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 48 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 49 H 0.07 1.30 7.98 -51.93 -0.41 0.89 16 50 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -32.10 391.92 -7.29 -39.39 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.25 Total: 8.37 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 0.17 Total: 0.58 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.21 Total: -60.70 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.12 Total: -11.01 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.10 -7.29 -39.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.864 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds