Wall clock time and date at job start Tue Mar 31 2020 19:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46655 * 2 1 4 4 N 1.46501 * 109.46818 * 119.99942 * 2 1 3 5 5 C 1.36939 * 119.99876 * 274.99495 * 4 2 1 6 6 H 1.07997 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99672 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00465 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99720 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46847 * 120.00475 * 9 7 5 12 12 H 1.48500 * 109.46980 * 240.00145 * 9 7 5 13 13 C 1.53001 * 109.46827 * 239.99900 * 2 1 3 14 14 H 1.08997 * 110.92039 * 296.09272 * 13 2 1 15 15 C 1.55162 * 111.00465 * 60.00465 * 13 2 1 16 16 C 1.54323 * 102.94064 * 153.57335 * 15 13 2 17 17 N 1.47021 * 107.27515 * 337.80391 * 16 15 13 18 18 C 1.34774 * 125.65144 * 178.89878 * 17 16 15 19 19 O 1.21612 * 120.00070 * 180.02562 * 18 17 16 20 20 C 1.47419 * 120.00050 * 0.02562 * 18 17 16 21 21 N 1.36070 * 126.44585 * 355.10859 * 20 18 17 22 22 C 1.29931 * 108.47428 * 180.02562 * 21 20 18 23 23 O 1.34050 * 109.24654 * 359.97438 * 22 21 20 24 24 C 1.34260 * 108.22598 * 359.73606 * 23 22 21 25 25 C 1.50694 * 126.52925 * 180.26389 * 24 23 22 26 26 C 1.52992 * 109.47520 * 242.11423 * 25 24 23 27 27 C 1.53000 * 109.46890 * 2.11573 * 25 24 23 28 28 C 1.53000 * 109.47013 * 122.10985 * 25 24 23 29 29 C 1.47433 * 108.69828 * 358.94086 * 17 16 15 30 30 H 1.09002 * 109.47043 * 60.00355 * 1 2 3 31 31 H 1.09000 * 109.46655 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47236 * 299.99899 * 1 2 3 33 33 H 0.96995 * 119.99992 * 95.00397 * 4 2 1 34 34 H 0.96998 * 120.00623 * 179.97438 * 8 7 5 35 35 H 1.09002 * 110.71332 * 271.93527 * 15 13 2 36 36 H 1.09001 * 110.72318 * 35.20431 * 15 13 2 37 37 H 1.09002 * 109.88235 * 97.22334 * 16 15 13 38 38 H 1.09003 * 109.87862 * 218.38638 * 16 15 13 39 39 H 1.08007 * 125.37888 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.46988 * 68.54045 * 26 25 24 41 41 H 1.08999 * 109.47366 * 188.53980 * 26 25 24 42 42 H 1.09000 * 109.47135 * 308.54399 * 26 25 24 43 43 H 1.09003 * 109.47568 * 59.99532 * 27 25 24 44 44 H 1.09001 * 109.47148 * 180.02562 * 27 25 24 45 45 H 1.09003 * 109.47465 * 299.99898 * 27 25 24 46 46 H 1.09000 * 109.47317 * 51.65394 * 28 25 24 47 47 H 1.09007 * 109.46923 * 171.65056 * 28 25 24 48 48 H 1.08997 * 109.47665 * 291.64794 * 28 25 24 49 49 H 1.09003 * 110.36602 * 265.28870 * 29 17 16 50 50 H 1.09002 * 110.36207 * 142.96740 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0074 2.3758 6 1 1.8920 1.0404 2.4243 7 6 2.6113 -0.6619 3.5092 8 7 2.9242 -1.9390 3.4502 9 14 2.7891 0.2699 5.1185 10 1 2.3743 1.6820 4.9213 11 1 1.9279 -0.3588 6.1522 12 1 4.2058 0.2268 5.5615 13 6 2.0400 -0.7213 -1.2493 14 1 1.7475 -1.7712 -1.2391 15 6 1.5426 -0.0177 -2.5397 16 6 2.6250 -0.3893 -3.5750 17 7 3.8428 -0.7366 -2.8280 18 6 5.0094 -1.1378 -3.3705 19 8 5.9553 -1.4006 -2.6526 20 6 5.1391 -1.2583 -4.8340 21 7 4.1471 -1.0896 -5.7499 22 6 4.6450 -1.2771 -6.9353 23 8 5.9492 -1.5667 -6.8260 24 6 6.2747 -1.5530 -5.5236 25 6 7.6371 -1.8179 -4.9366 26 6 7.5731 -3.0529 -4.0359 27 6 8.6403 -2.0617 -6.0659 28 6 8.0814 -0.6079 -4.1123 29 6 3.5759 -0.5741 -1.3872 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2475 -2.3963 4.2422 35 1 0.5704 -0.4078 -2.8412 36 1 1.4989 1.0621 -2.3978 37 1 2.2955 -1.2444 -4.1651 38 1 2.8206 0.4612 -4.2281 39 1 4.0949 -1.2101 -7.8624 40 1 7.4058 -3.9399 -4.6469 41 1 8.5133 -3.1569 -3.4944 42 1 6.7546 -2.9419 -3.3247 43 1 8.6859 -1.1818 -6.7077 44 1 9.6256 -2.2538 -5.6413 45 1 8.3238 -2.9237 -6.6532 46 1 7.2967 -0.3431 -3.4037 47 1 8.9938 -0.8537 -3.5689 48 1 8.2703 0.2350 -4.7770 49 1 3.8942 0.4128 -1.0513 50 1 4.0842 -1.3519 -0.8173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724554970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:08 Heat of formation + Delta-G solvation = -20.123564 kcal Electronic energy + Delta-G solvation = -30157.630947 eV Core-core repulsion = 26186.137684 eV Total energy + Delta-G solvation = -3971.493263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.51146 -41.10678 -39.31283 -37.78821 -36.71267 -35.84220 -34.24389 -32.07753 -30.83153 -30.01119 -29.58803 -28.27053 -28.24060 -26.14295 -25.66226 -23.91383 -23.58517 -22.85371 -21.28611 -21.07301 -20.10536 -19.25225 -18.65146 -17.85209 -17.49725 -17.31123 -16.55544 -16.48819 -16.05221 -15.80730 -15.57156 -15.33111 -15.10299 -14.86169 -14.51999 -14.43782 -14.22373 -13.95781 -13.60817 -13.45759 -13.23092 -13.16930 -12.97449 -12.87949 -12.75848 -12.60973 -12.55372 -12.38724 -12.18981 -12.14222 -12.05829 -12.04442 -12.00299 -11.70234 -11.56118 -11.47835 -11.32701 -10.95259 -10.90937 -10.03741 -9.57494 -8.97407 -7.90967 -5.18498 0.03797 1.07923 1.47077 1.47911 1.50281 1.57417 1.93270 2.17957 2.57670 3.05899 3.38394 3.42696 3.50805 3.70027 3.73811 3.85662 3.90207 3.92485 4.05092 4.18908 4.35118 4.44884 4.48310 4.52590 4.57815 4.65823 4.70772 4.72504 4.76383 4.82674 4.86697 4.91197 4.94192 4.95723 4.99141 5.00225 5.10231 5.12911 5.18846 5.21266 5.26130 5.35726 5.39408 5.42076 5.52570 5.55527 5.65737 6.31233 6.37586 6.53422 7.03723 7.37105 8.14396 8.36086 9.32870 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.002921 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.203652 B = 9584.413820 C =10985.499222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.737 5.737 5 C -0.229 4.229 6 H 0.076 0.924 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.295 1.295 12 H -0.298 1.298 13 C -0.092 4.092 14 H 0.073 0.927 15 C -0.113 4.113 16 C 0.120 3.880 17 N -0.605 5.605 18 C 0.594 3.406 19 O -0.547 6.547 20 C -0.090 4.090 21 N -0.485 5.485 22 C 0.192 3.808 23 O -0.193 6.193 24 C 0.055 3.945 25 C 0.021 3.979 26 C -0.151 4.151 27 C -0.137 4.137 28 C -0.150 4.150 29 C 0.127 3.873 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.307 0.693 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 2.453 -28.210 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.072 3.928 3 H 0.064 0.936 4 N -0.377 5.377 5 C -0.361 4.361 6 H 0.094 0.906 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.797 3.203 10 H -0.189 1.189 11 H -0.223 1.223 12 H -0.226 1.226 13 C -0.112 4.112 14 H 0.091 0.909 15 C -0.151 4.151 16 C -0.002 4.002 17 N -0.336 5.336 18 C 0.384 3.616 19 O -0.428 6.428 20 C -0.209 4.209 21 N -0.213 5.213 22 C -0.036 4.036 23 O -0.079 6.079 24 C -0.003 4.003 25 C 0.020 3.980 26 C -0.208 4.208 27 C -0.195 4.195 28 C -0.207 4.207 29 C 0.005 3.995 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.321 0.679 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.069 2.627 -27.633 28.054 hybrid contribution 0.786 -0.374 1.314 1.576 sum 4.855 2.253 -26.319 26.857 Atomic orbital electron populations 1.22277 0.96909 1.00959 1.01117 1.20389 0.93232 0.94674 0.84477 0.93573 1.42663 1.78461 1.10244 1.06369 1.19624 1.34184 0.94090 0.88211 0.90581 1.25501 1.03385 0.96837 1.01358 1.69826 1.53022 1.10248 1.29130 0.85156 0.76557 0.78351 0.80252 1.18872 1.22252 1.22570 1.22475 0.92447 1.00466 0.95777 0.90873 1.22762 0.98873 1.01717 0.91778 1.22145 0.82759 1.01266 0.94046 1.48417 1.12192 1.64801 1.08231 1.16782 0.81749 0.77319 0.85730 1.90693 1.38068 1.51729 1.62270 1.21125 0.91441 1.14121 0.94188 1.70812 1.31347 1.19154 0.99968 1.29273 0.78066 0.96310 0.99965 1.84399 1.30024 1.67365 1.26155 1.23950 0.97847 0.98062 0.80441 1.19269 0.85500 0.97656 0.95567 1.22124 1.04247 0.94939 0.99508 1.21888 0.98555 1.02633 0.96381 1.22112 1.02727 0.95920 0.99973 1.22043 0.96963 1.00476 0.80045 0.90134 0.93975 0.94645 0.79857 0.94318 0.87367 0.89301 0.90323 0.90427 0.67880 0.92315 0.90597 0.91772 0.91559 0.90140 0.91632 0.91966 0.90534 0.92140 0.92298 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.27 71.98 0.67 -4.33 16 2 C 0.18 6.79 2.43 44.99 0.11 6.90 16 3 H 0.05 1.77 8.01 -2.39 -0.02 1.75 16 4 N -0.74 -36.97 4.97 -322.93 -1.61 -38.57 16 5 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 8 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 9 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 13 C -0.09 -2.92 2.65 -9.40 -0.02 -2.94 16 14 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.11 -2.53 5.29 31.78 0.17 -2.36 16 16 C 0.12 2.88 5.53 86.73 0.48 3.36 16 17 N -0.60 -19.27 3.33 -815.64 -2.71 -21.99 16 18 C 0.59 19.87 7.20 86.66 0.62 20.49 16 19 O -0.55 -20.82 10.52 -4.07 -0.04 -20.86 16 20 C -0.09 -2.44 6.61 40.41 0.27 -2.18 16 21 N -0.48 -10.34 8.86 -305.15 -2.70 -13.04 16 22 C 0.19 2.51 13.19 130.52 1.72 4.23 16 23 O -0.19 -3.33 10.19 0.35 0.00 -3.33 16 24 C 0.05 1.26 5.73 25.18 0.14 1.40 16 25 C 0.02 0.44 0.75 -52.93 -0.04 0.40 16 26 C -0.15 -3.63 8.19 71.98 0.59 -3.04 16 27 C -0.14 -2.05 8.05 71.98 0.58 -1.47 16 28 C -0.15 -3.52 8.17 71.98 0.59 -2.93 16 29 C 0.13 4.63 6.23 86.85 0.54 5.17 16 30 H 0.08 1.96 7.28 -2.39 -0.02 1.94 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.11 1.90 8.11 -2.39 -0.02 1.88 16 36 H 0.09 1.81 8.04 -2.39 -0.02 1.80 16 37 H 0.08 1.84 7.53 -2.39 -0.02 1.82 16 38 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 39 H 0.31 0.01 8.06 -2.91 -0.02 -0.01 16 40 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 41 H 0.08 1.65 8.07 -2.39 -0.02 1.63 16 42 H 0.06 2.02 4.72 -2.39 -0.01 2.01 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 1.90 4.57 -2.39 -0.01 1.89 16 47 H 0.08 1.62 8.08 -2.38 -0.02 1.60 16 48 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 49 H 0.06 2.25 7.98 -2.39 -0.02 2.23 16 50 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -74.18 391.92 3.18 -71.00 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.21 Total: 31.53 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 7.72 Total: 6.67 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -6.74 Total: -134.25 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.04 Total: -24.19 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -74.18 3.18 -71.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.881 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds