Wall clock time and date at job start Tue Mar 31 2020 19:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47774 * 2 1 4 4 N 1.46505 * 109.47280 * 239.99958 * 2 1 3 5 5 C 1.36943 * 119.99645 * 85.27009 * 4 2 1 6 6 H 1.07997 * 119.99973 * 359.73508 * 5 4 2 7 7 C 1.38808 * 119.99622 * 179.72726 * 5 4 2 8 8 N 1.31612 * 120.00385 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99492 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47389 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47065 * 120.00200 * 9 7 5 12 12 H 1.48499 * 109.46932 * 239.99861 * 9 7 5 13 13 C 1.53000 * 109.47378 * 120.00338 * 2 1 3 14 14 H 1.09008 * 110.88820 * 57.56864 * 13 2 1 15 15 C 1.55150 * 111.00417 * 293.65116 * 13 2 1 16 16 C 1.54321 * 102.94354 * 206.42318 * 15 13 2 17 17 N 1.47019 * 107.27277 * 22.19189 * 16 15 13 18 18 C 1.34778 * 125.65191 * 181.02988 * 17 16 15 19 19 O 1.21614 * 120.00424 * 180.02562 * 18 17 16 20 20 C 1.47415 * 119.99713 * 0.03283 * 18 17 16 21 21 N 1.36068 * 126.45477 * 355.10447 * 20 18 17 22 22 C 1.29934 * 108.48255 * 180.02562 * 21 20 18 23 23 O 1.34054 * 109.24212 * 359.97438 * 22 21 20 24 24 C 1.34263 * 108.22663 * 359.73243 * 23 22 21 25 25 C 1.50692 * 126.52467 * 180.26435 * 24 23 22 26 26 C 1.53007 * 109.47250 * 242.12147 * 25 24 23 27 27 C 1.53001 * 109.47453 * 2.12093 * 25 24 23 28 28 C 1.53005 * 109.47328 * 122.12426 * 25 24 23 29 29 C 1.47421 * 108.70290 * 1.05844 * 17 16 15 30 30 H 1.09004 * 109.46781 * 299.99461 * 1 2 3 31 31 H 1.08998 * 109.47153 * 60.00060 * 1 2 3 32 32 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00507 * 265.00684 * 4 2 1 34 34 H 0.97001 * 120.00348 * 179.97438 * 8 7 5 35 35 H 1.09010 * 110.71812 * 324.78084 * 15 13 2 36 36 H 1.08996 * 110.72687 * 88.05542 * 15 13 2 37 37 H 1.09000 * 109.88451 * 262.77351 * 16 15 13 38 38 H 1.09003 * 110.01610 * 141.67952 * 16 15 13 39 39 H 1.07993 * 125.37864 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46778 * 68.53944 * 26 25 24 41 41 H 1.08998 * 109.47202 * 188.54403 * 26 25 24 42 42 H 1.09000 * 109.46697 * 308.54493 * 26 25 24 43 43 H 1.08999 * 109.47074 * 60.00035 * 27 25 24 44 44 H 1.08996 * 109.47118 * 180.02562 * 27 25 24 45 45 H 1.09003 * 109.46838 * 300.00337 * 27 25 24 46 46 H 1.08999 * 109.46892 * 51.64484 * 28 25 24 47 47 H 1.08999 * 109.47158 * 171.64609 * 28 25 24 48 48 H 1.08997 * 109.46596 * 291.65051 * 28 25 24 49 49 H 1.09000 * 110.37396 * 217.03916 * 29 17 16 50 50 H 1.09004 * 110.37037 * 94.71278 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1544 -0.0061 -2.3744 6 1 1.8976 1.0418 -2.4228 7 6 2.6225 -0.6591 -3.5063 8 7 2.9351 -1.9362 -3.4474 9 14 2.8087 0.2750 -5.1134 10 1 2.3929 1.6869 -4.9164 11 1 4.2278 0.2325 -5.5490 12 1 1.9530 -0.3522 -6.1524 13 6 2.0401 -0.7213 1.2492 14 1 1.6547 -1.7400 1.2943 15 6 1.6776 0.0686 2.5344 16 6 2.7767 -0.3642 3.5276 17 7 3.9165 -0.8466 2.7343 18 6 5.0708 -1.3325 3.2324 19 8 5.9497 -1.7043 2.4786 20 6 5.2678 -1.4133 4.6911 21 7 4.4180 -0.9522 5.6485 22 6 4.9343 -1.2047 6.8138 23 8 6.1112 -1.8254 6.6505 24 6 6.3311 -1.9688 5.3338 25 6 7.5294 -2.6173 4.6901 26 6 8.2725 -1.5851 3.8395 27 6 8.4651 -3.1518 5.7763 28 6 7.0674 -3.7735 3.8007 29 6 3.5882 -0.7104 1.3036 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2619 -2.3926 -4.2385 35 1 1.7232 1.1425 2.3528 36 1 0.6922 -0.2203 2.8998 37 1 2.4044 -1.1648 4.1667 38 1 3.0831 0.4851 4.1382 39 1 4.4858 -0.9547 7.7639 40 1 8.7314 -0.8408 4.4903 41 1 9.0462 -2.0843 3.2561 42 1 7.5692 -1.0950 3.1663 43 1 7.9358 -3.8872 6.3822 44 1 9.3320 -3.6205 5.3106 45 1 8.7942 -2.3281 6.4098 46 1 6.2897 -3.4219 3.1228 47 1 7.9123 -4.1468 3.2221 48 1 6.6711 -4.5751 4.4239 49 1 3.9934 -1.5505 0.7395 50 1 3.9748 0.2312 0.9135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724554971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:11 Heat of formation + Delta-G solvation = -20.201703 kcal Electronic energy + Delta-G solvation = -30198.862424 eV Core-core repulsion = 26227.365773 eV Total energy + Delta-G solvation = -3971.496651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.51086 -41.10480 -39.30913 -37.78724 -36.70989 -35.84115 -34.23758 -32.07802 -30.83018 -30.01190 -29.59559 -28.27379 -28.24048 -26.13425 -25.66462 -23.91251 -23.60283 -22.81479 -21.30103 -21.06941 -20.11347 -19.26075 -18.65287 -17.83961 -17.49975 -17.29946 -16.57297 -16.43754 -16.09362 -15.77998 -15.58575 -15.32032 -15.12666 -14.88065 -14.54367 -14.42321 -14.21619 -13.92169 -13.58492 -13.47782 -13.23246 -13.14850 -12.97923 -12.88689 -12.77331 -12.63701 -12.54493 -12.34934 -12.19690 -12.14826 -12.06156 -12.03752 -12.03629 -11.69067 -11.56087 -11.46288 -11.33981 -10.95223 -10.91075 -10.03812 -9.57369 -8.97250 -7.90813 -5.18300 0.03711 1.07980 1.47024 1.47854 1.50161 1.57331 1.93313 2.18110 2.57657 3.05755 3.38432 3.42956 3.50552 3.70200 3.73222 3.86654 3.90005 3.92105 4.04869 4.19996 4.35578 4.44534 4.48164 4.52454 4.57499 4.65273 4.70610 4.72705 4.76702 4.82428 4.87180 4.91062 4.94973 4.95607 4.99069 5.00731 5.09328 5.12952 5.19067 5.21262 5.27232 5.35555 5.39209 5.41430 5.52607 5.55552 5.65774 6.31292 6.37657 6.53544 7.03922 7.37258 8.14545 8.36231 9.32989 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002974 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.824089 B = 9411.961418 C =10833.475365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.737 5.737 5 C -0.229 4.229 6 H 0.076 0.924 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.295 1.295 13 C -0.092 4.092 14 H 0.075 0.925 15 C -0.113 4.113 16 C 0.120 3.880 17 N -0.605 5.605 18 C 0.594 3.406 19 O -0.547 6.547 20 C -0.090 4.090 21 N -0.484 5.484 22 C 0.192 3.808 23 O -0.193 6.193 24 C 0.055 3.945 25 C 0.021 3.979 26 C -0.151 4.151 27 C -0.137 4.137 28 C -0.151 4.151 29 C 0.129 3.871 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.307 0.693 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 1.355 27.866 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 H 0.065 0.935 4 N -0.377 5.377 5 C -0.361 4.361 6 H 0.094 0.906 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.797 3.203 10 H -0.189 1.189 11 H -0.226 1.226 12 H -0.223 1.223 13 C -0.112 4.112 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.002 4.002 17 N -0.337 5.337 18 C 0.384 3.616 19 O -0.428 6.428 20 C -0.209 4.209 21 N -0.213 5.213 22 C -0.036 4.036 23 O -0.079 6.079 24 C -0.003 4.003 25 C 0.020 3.980 26 C -0.207 4.207 27 C -0.194 4.194 28 C -0.208 4.208 29 C 0.006 3.994 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.202 0.798 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.321 0.679 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.264 1.619 27.292 27.671 hybrid contribution 0.764 -0.433 -1.343 1.605 sum 5.028 1.186 25.949 26.458 Atomic orbital electron populations 1.22265 0.96919 1.00933 1.01110 1.20401 0.93221 0.94696 0.84474 0.93532 1.42659 1.78427 1.10187 1.06457 1.19624 1.34053 0.94087 0.88346 0.90579 1.25496 1.03357 0.96843 1.01364 1.69825 1.52907 1.10273 1.29184 0.85160 0.76549 0.78363 0.80267 1.18870 1.22596 1.22258 1.22489 0.92404 1.00431 0.95866 0.90647 1.22756 0.99233 1.00855 0.92286 1.22139 0.84763 0.99862 0.93428 1.48422 1.15800 1.61169 1.08272 1.16789 0.81234 0.77648 0.85943 1.90697 1.42050 1.50225 1.59812 1.21120 0.95846 1.09872 0.94012 1.70808 1.29807 1.21445 0.99210 1.29275 0.80710 0.93072 1.00541 1.84400 1.38138 1.60450 1.24943 1.23945 0.97901 0.98083 0.80372 1.19269 0.88498 0.95240 0.94982 1.22122 1.00444 0.98418 0.99766 1.21886 0.99022 1.01639 0.96897 1.22116 1.03273 0.95919 0.99506 1.22002 0.96488 1.00490 0.80385 0.90195 0.94604 0.94006 0.79849 0.94329 0.89437 0.87232 0.90667 0.90117 0.67858 0.92162 0.90639 0.91724 0.91643 0.90155 0.91507 0.92069 0.90555 0.92245 0.93553 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.34 71.98 0.67 -4.32 16 2 C 0.18 6.78 2.41 44.99 0.11 6.89 16 3 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 4 N -0.74 -36.93 4.82 -322.93 -1.56 -38.49 16 5 C -0.23 -12.73 9.93 84.03 0.83 -11.89 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 8 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 9 Si 0.97 47.24 29.55 68.60 2.03 49.26 16 10 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 13 C -0.09 -2.92 2.62 -9.40 -0.02 -2.95 16 14 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 15 C -0.11 -2.54 5.59 31.78 0.18 -2.36 16 16 C 0.12 2.91 5.53 86.73 0.48 3.39 16 17 N -0.61 -19.51 3.33 -815.67 -2.71 -22.22 16 18 C 0.59 20.09 7.20 86.66 0.62 20.71 16 19 O -0.55 -21.13 10.52 -4.07 -0.04 -21.17 16 20 C -0.09 -2.46 6.61 40.41 0.27 -2.19 16 21 N -0.48 -10.39 8.86 -305.15 -2.70 -13.09 16 22 C 0.19 2.53 13.19 130.52 1.72 4.25 16 23 O -0.19 -3.35 10.19 0.29 0.00 -3.35 16 24 C 0.05 1.27 5.73 25.19 0.14 1.42 16 25 C 0.02 0.45 0.75 -52.93 -0.04 0.41 16 26 C -0.15 -3.59 8.19 71.98 0.59 -3.00 16 27 C -0.14 -2.08 8.05 71.98 0.58 -1.50 16 28 C -0.15 -3.70 8.17 71.98 0.59 -3.11 16 29 C 0.13 4.76 6.08 86.86 0.53 5.29 16 30 H 0.08 1.95 7.50 -2.39 -0.02 1.93 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 34 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.09 1.82 8.01 -2.38 -0.02 1.80 16 36 H 0.11 1.88 8.13 -2.39 -0.02 1.86 16 37 H 0.08 1.74 7.75 -2.39 -0.02 1.72 16 38 H 0.08 1.84 7.64 -2.39 -0.02 1.83 16 39 H 0.31 0.02 8.06 -2.91 -0.02 0.00 16 40 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 41 H 0.07 1.64 8.07 -2.39 -0.02 1.62 16 42 H 0.06 2.01 4.72 -2.39 -0.01 2.00 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 1.95 4.57 -2.39 -0.01 1.94 16 47 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 48 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 49 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 50 H 0.06 2.20 8.04 -2.38 -0.02 2.19 16 Total: -1.00 -74.33 392.24 3.23 -71.10 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.21 Total: 31.73 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 7.72 Total: 6.90 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -6.69 Total: -134.47 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.04 Total: -24.52 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -74.33 3.23 -71.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.896 kcal (2) G-P(sol) polarization free energy of solvation -74.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds