Wall clock time and date at job start Tue Mar 31 2020 19:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 N 1.46499 * 109.47185 * 239.99878 * 2 1 3 5 5 C 1.36942 * 119.99951 * 84.99538 * 4 2 1 6 6 H 1.08003 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99751 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46910 * 119.99926 * 9 7 5 12 12 H 1.48496 * 109.47275 * 239.99970 * 9 7 5 13 13 C 1.53002 * 109.47126 * 120.00150 * 2 1 3 14 14 H 1.08995 * 110.89027 * 60.27265 * 13 2 1 15 15 C 1.55400 * 111.06836 * 184.06082 * 13 2 1 16 16 C 1.54327 * 102.82972 * 153.48530 * 15 13 2 17 17 N 1.47015 * 107.39803 * 337.97254 * 16 15 13 18 18 C 1.34775 * 125.64635 * 178.89962 * 17 16 15 19 19 O 1.21616 * 120.00548 * 179.97438 * 18 17 16 20 20 C 1.47431 * 119.99894 * 359.97438 * 18 17 16 21 21 N 1.36059 * 126.44539 * 355.12816 * 20 18 17 22 22 C 1.29946 * 108.47318 * 180.02562 * 21 20 18 23 23 O 1.34044 * 109.24458 * 359.97438 * 22 21 20 24 24 C 1.34266 * 108.22480 * 359.73666 * 23 22 21 25 25 C 1.50704 * 126.52457 * 180.26059 * 24 23 22 26 26 C 1.52999 * 109.47287 * 242.04955 * 25 24 23 27 27 C 1.53002 * 109.46919 * 2.05188 * 25 24 23 28 28 C 1.52998 * 109.46838 * 122.04510 * 25 24 23 29 29 C 1.47418 * 108.70851 * 358.86634 * 17 16 15 30 30 H 1.09002 * 109.46781 * 186.24010 * 1 2 3 31 31 H 1.09007 * 109.46869 * 306.23197 * 1 2 3 32 32 H 1.08994 * 109.47020 * 66.23336 * 1 2 3 33 33 H 0.97002 * 120.00078 * 265.00756 * 4 2 1 34 34 H 0.97009 * 119.99823 * 179.97438 * 8 7 5 35 35 H 1.09004 * 110.70005 * 35.19141 * 15 13 2 36 36 H 1.09004 * 110.85101 * 271.84559 * 15 13 2 37 37 H 1.08996 * 109.88070 * 218.47443 * 16 15 13 38 38 H 1.09000 * 109.88055 * 97.46453 * 16 15 13 39 39 H 1.07998 * 125.37432 * 179.97438 * 22 21 20 40 40 H 1.09003 * 109.46902 * 68.94924 * 26 25 24 41 41 H 1.08995 * 109.47079 * 188.95363 * 26 25 24 42 42 H 1.09002 * 109.46812 * 308.95214 * 26 25 24 43 43 H 1.08992 * 109.47651 * 59.99613 * 27 25 24 44 44 H 1.08997 * 109.47008 * 180.02562 * 27 25 24 45 45 H 1.09002 * 109.46931 * 299.99631 * 27 25 24 46 46 H 1.09002 * 109.47163 * 52.19149 * 28 25 24 47 47 H 1.09003 * 109.46987 * 172.18951 * 28 25 24 48 48 H 1.09002 * 109.47709 * 292.19027 * 28 25 24 49 49 H 1.08995 * 110.37254 * 142.97086 * 29 17 16 50 50 H 1.09003 * 110.36695 * 265.17847 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4241 7 6 2.6113 -0.6620 -3.5092 8 7 2.9234 -1.9392 -3.4503 9 14 2.7902 0.2700 -5.1182 10 1 2.3774 1.6827 -4.9205 11 1 4.2072 0.2262 -5.5607 12 1 1.9291 -0.3577 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 1.6935 -1.7545 1.2702 15 6 3.5900 -0.6546 1.3391 16 6 3.8506 -0.7700 2.8559 17 7 2.6194 -0.3586 3.5460 18 6 2.4359 -0.3405 4.8811 19 8 1.3707 0.0207 5.3437 20 6 3.5264 -0.7586 5.7807 21 7 4.7305 -1.2708 5.4077 22 6 5.4225 -1.5182 6.4794 23 8 4.7025 -1.1799 7.5582 24 6 3.5206 -0.6991 7.1403 25 6 2.3992 -0.1938 8.0112 26 6 1.1581 -1.0632 7.8001 27 6 2.8245 -0.2598 9.4795 28 6 2.0769 1.2546 7.6383 29 6 1.6190 0.0317 2.5359 30 1 -0.3633 -1.0216 0.1117 31 1 -0.3633 0.6075 0.8290 32 1 -0.3633 0.4141 -0.9405 33 1 2.2490 -1.6318 -1.1526 34 1 3.2461 -2.3967 -4.2426 35 1 3.9576 0.2974 0.9560 36 1 4.0458 -1.4883 0.8050 37 1 4.6728 -0.1141 3.1417 38 1 4.0927 -1.8013 3.1130 39 1 6.4203 -1.9311 6.4979 40 1 1.3358 -2.0565 8.2125 41 1 0.3055 -0.6078 8.3039 42 1 0.9488 -1.1448 6.7335 43 1 3.7087 0.3595 9.6299 44 1 2.0133 0.1052 10.1094 45 1 3.0542 -1.2917 9.7452 46 1 1.9091 1.3243 6.5635 47 1 1.1795 1.5749 8.1677 48 1 2.9123 1.8964 7.9180 49 1 0.6225 -0.2797 2.8488 50 1 1.6452 1.1091 2.3727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724554972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:16 Heat of formation + Delta-G solvation = 0.714430 kcal Electronic energy + Delta-G solvation = -29971.877012 eV Core-core repulsion = 26001.287352 eV Total energy + Delta-G solvation = -3970.589660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.72538 -39.97734 -38.12582 -36.86481 -35.23291 -34.92600 -32.39127 -30.60383 -29.88022 -29.17522 -27.56848 -27.46337 -27.43636 -25.15929 -23.84786 -23.17706 -22.48747 -21.35694 -20.39534 -19.59685 -19.24662 -17.86022 -17.10854 -17.00901 -16.51701 -16.11266 -15.56376 -15.24875 -14.93274 -14.63688 -14.34756 -14.01843 -13.75522 -13.64856 -13.38193 -13.15510 -12.72106 -12.61144 -12.54987 -12.46489 -12.27108 -12.10418 -11.92424 -11.74774 -11.65293 -11.30980 -11.28921 -11.23987 -11.19599 -10.89182 -10.73964 -10.63464 -10.53046 -10.26635 -10.16032 -9.91073 -9.79659 -9.62838 -9.16669 -8.90800 -8.47009 -6.94892 -5.75949 -3.04127 0.90870 1.86317 2.28369 2.95997 3.18449 3.43438 3.49551 3.51367 3.81251 4.17581 4.40831 4.57394 4.64645 4.65814 4.81032 4.94478 4.99867 5.20563 5.24564 5.32547 5.39856 5.41323 5.51925 5.55508 5.61460 5.62019 5.64227 5.74570 5.75703 5.76310 5.88116 5.89689 5.91237 6.02228 6.05821 6.13962 6.21263 6.25280 6.28802 6.36981 6.48073 6.50318 6.64694 6.68095 6.89487 7.12457 7.23638 7.54474 7.71720 8.10392 8.42652 9.54168 10.11717 10.46690 11.46779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.002432 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.051246 B =11510.584628 C =12227.674031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.118 4.118 16 C 0.110 3.890 17 N -0.596 5.596 18 C 0.608 3.392 19 O -0.528 6.528 20 C -0.069 4.069 21 N -0.455 5.455 22 C 0.166 3.834 23 O -0.197 6.197 24 C 0.054 3.946 25 C 0.023 3.977 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.153 4.153 29 C 0.115 3.885 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.079 0.921 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 1.962 26.282 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.012 4.012 17 N -0.327 5.327 18 C 0.397 3.603 19 O -0.408 6.408 20 C -0.189 4.189 21 N -0.184 5.184 22 C -0.062 4.062 23 O -0.083 6.083 24 C -0.003 4.003 25 C 0.023 3.977 26 C -0.210 4.210 27 C -0.203 4.203 28 C -0.210 4.210 29 C -0.007 4.007 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.361 2.174 25.830 26.029 hybrid contribution 0.426 0.016 -0.351 0.552 sum 2.787 2.190 25.479 25.725 Atomic orbital electron populations 1.22497 0.99264 1.00538 1.00501 1.20127 0.91749 0.95142 0.85452 0.93309 1.42374 1.78133 1.10673 1.05117 1.19259 1.36164 0.93837 0.87254 0.91192 1.24713 1.02344 0.95957 0.97982 1.69667 1.51155 1.08616 1.28698 0.86159 0.77264 0.78817 0.84210 1.20607 1.21951 1.21972 1.22715 0.95417 1.00171 0.93907 0.90133 1.22675 0.96096 1.03940 0.92897 1.22180 0.85890 1.00773 0.92373 1.48312 1.16453 1.63628 1.04345 1.16299 0.85375 0.78240 0.80400 1.90659 1.26182 1.49348 1.74589 1.21374 0.95262 1.10223 0.92025 1.70903 1.03149 1.14269 1.30070 1.28072 0.99424 1.00915 0.77801 1.84366 1.24218 1.61119 1.38609 1.23860 0.85937 0.96687 0.93774 1.19228 0.89025 0.97046 0.92445 1.22189 0.94930 0.97771 1.06087 1.21936 1.01790 1.02403 0.94132 1.22178 1.01215 0.91827 1.05769 1.22360 0.92100 0.99457 0.86798 0.93615 0.94389 0.92538 0.78293 0.93631 0.90455 0.89523 0.91441 0.90784 0.73076 0.93308 0.91380 0.88542 0.92263 0.91360 0.92217 0.88806 0.91307 0.93271 0.90299 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.21 37.16 0.34 -2.62 16 2 C 0.19 3.50 2.41 -67.93 -0.16 3.34 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -17.26 4.89 -53.42 -0.26 -17.52 16 5 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.40 5.50 -17.44 -0.10 -0.49 16 8 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 9 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C -0.10 -1.63 2.63 -88.34 -0.23 -1.86 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.12 -1.81 6.22 -24.76 -0.15 -1.97 16 16 C 0.11 1.53 5.53 -3.07 -0.02 1.51 16 17 N -0.60 -8.64 3.33 -171.79 -0.57 -9.21 16 18 C 0.61 8.86 7.20 -12.52 -0.09 8.77 16 19 O -0.53 -8.01 10.52 5.26 0.06 -7.96 16 20 C -0.07 -0.90 6.61 -83.02 -0.55 -1.45 16 21 N -0.46 -5.41 8.86 -11.48 -0.10 -5.52 16 22 C 0.17 1.41 13.19 51.96 0.69 2.09 16 23 O -0.20 -1.92 10.19 6.50 0.07 -1.85 16 24 C 0.05 0.61 5.73 -35.08 -0.20 0.41 16 25 C 0.02 0.23 0.75 -155.66 -0.12 0.11 16 26 C -0.15 -1.55 8.19 37.16 0.30 -1.25 16 27 C -0.15 -1.10 8.05 37.16 0.30 -0.81 16 28 C -0.15 -1.54 8.17 37.16 0.30 -1.24 16 29 C 0.12 1.67 5.53 -2.53 -0.01 1.65 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.57 7.63 -51.93 -0.40 0.17 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 38 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 39 H 0.25 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.10 1.23 4.72 -51.93 -0.24 0.98 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 1.18 4.57 -51.93 -0.24 0.94 16 47 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 48 H 0.05 0.45 8.13 -51.93 -0.42 0.03 16 49 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 50 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -31.17 392.45 -7.32 -38.50 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.28 Total: 7.70 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.15 Total: -0.24 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.21 Total: -59.19 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.12 Total: -9.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.17 -7.32 -38.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.211 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds