Wall clock time and date at job start Tue Mar 31 2020 19:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 N 1.46499 * 109.47185 * 239.99878 * 2 1 3 5 5 C 1.36942 * 119.99951 * 84.99538 * 4 2 1 6 6 H 1.08003 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99751 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46910 * 119.99926 * 9 7 5 12 12 H 1.48496 * 109.47275 * 239.99970 * 9 7 5 13 13 C 1.53002 * 109.47126 * 120.00150 * 2 1 3 14 14 H 1.08995 * 110.89027 * 60.27265 * 13 2 1 15 15 C 1.55400 * 111.06836 * 184.06082 * 13 2 1 16 16 C 1.54327 * 102.82972 * 153.48530 * 15 13 2 17 17 N 1.47015 * 107.39803 * 337.97254 * 16 15 13 18 18 C 1.34775 * 125.64635 * 178.89962 * 17 16 15 19 19 O 1.21616 * 120.00548 * 179.97438 * 18 17 16 20 20 C 1.47431 * 119.99894 * 359.97438 * 18 17 16 21 21 N 1.36059 * 126.44539 * 355.12816 * 20 18 17 22 22 C 1.29946 * 108.47318 * 180.02562 * 21 20 18 23 23 O 1.34044 * 109.24458 * 359.97438 * 22 21 20 24 24 C 1.34266 * 108.22480 * 359.73666 * 23 22 21 25 25 C 1.50704 * 126.52457 * 180.26059 * 24 23 22 26 26 C 1.52999 * 109.47287 * 242.04955 * 25 24 23 27 27 C 1.53002 * 109.46919 * 2.05188 * 25 24 23 28 28 C 1.52998 * 109.46838 * 122.04510 * 25 24 23 29 29 C 1.47418 * 108.70851 * 358.86634 * 17 16 15 30 30 H 1.09002 * 109.46781 * 186.24010 * 1 2 3 31 31 H 1.09007 * 109.46869 * 306.23197 * 1 2 3 32 32 H 1.08994 * 109.47020 * 66.23336 * 1 2 3 33 33 H 0.97002 * 120.00078 * 265.00756 * 4 2 1 34 34 H 0.97009 * 119.99823 * 179.97438 * 8 7 5 35 35 H 1.09004 * 110.70005 * 35.19141 * 15 13 2 36 36 H 1.09004 * 110.85101 * 271.84559 * 15 13 2 37 37 H 1.08996 * 109.88070 * 218.47443 * 16 15 13 38 38 H 1.09000 * 109.88055 * 97.46453 * 16 15 13 39 39 H 1.07998 * 125.37432 * 179.97438 * 22 21 20 40 40 H 1.09003 * 109.46902 * 68.94924 * 26 25 24 41 41 H 1.08995 * 109.47079 * 188.95363 * 26 25 24 42 42 H 1.09002 * 109.46812 * 308.95214 * 26 25 24 43 43 H 1.08992 * 109.47651 * 59.99613 * 27 25 24 44 44 H 1.08997 * 109.47008 * 180.02562 * 27 25 24 45 45 H 1.09002 * 109.46931 * 299.99631 * 27 25 24 46 46 H 1.09002 * 109.47163 * 52.19149 * 28 25 24 47 47 H 1.09003 * 109.46987 * 172.18951 * 28 25 24 48 48 H 1.09002 * 109.47709 * 292.19027 * 28 25 24 49 49 H 1.08995 * 110.37254 * 142.97086 * 29 17 16 50 50 H 1.09003 * 110.36695 * 265.17847 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4241 7 6 2.6113 -0.6620 -3.5092 8 7 2.9234 -1.9392 -3.4503 9 14 2.7902 0.2700 -5.1182 10 1 2.3774 1.6827 -4.9205 11 1 4.2072 0.2262 -5.5607 12 1 1.9291 -0.3577 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 1.6935 -1.7545 1.2702 15 6 3.5900 -0.6546 1.3391 16 6 3.8506 -0.7700 2.8559 17 7 2.6194 -0.3586 3.5460 18 6 2.4359 -0.3405 4.8811 19 8 1.3707 0.0207 5.3437 20 6 3.5264 -0.7586 5.7807 21 7 4.7305 -1.2708 5.4077 22 6 5.4225 -1.5182 6.4794 23 8 4.7025 -1.1799 7.5582 24 6 3.5206 -0.6991 7.1403 25 6 2.3992 -0.1938 8.0112 26 6 1.1581 -1.0632 7.8001 27 6 2.8245 -0.2598 9.4795 28 6 2.0769 1.2546 7.6383 29 6 1.6190 0.0317 2.5359 30 1 -0.3633 -1.0216 0.1117 31 1 -0.3633 0.6075 0.8290 32 1 -0.3633 0.4141 -0.9405 33 1 2.2490 -1.6318 -1.1526 34 1 3.2461 -2.3967 -4.2426 35 1 3.9576 0.2974 0.9560 36 1 4.0458 -1.4883 0.8050 37 1 4.6728 -0.1141 3.1417 38 1 4.0927 -1.8013 3.1130 39 1 6.4203 -1.9311 6.4979 40 1 1.3358 -2.0565 8.2125 41 1 0.3055 -0.6078 8.3039 42 1 0.9488 -1.1448 6.7335 43 1 3.7087 0.3595 9.6299 44 1 2.0133 0.1052 10.1094 45 1 3.0542 -1.2917 9.7452 46 1 1.9091 1.3243 6.5635 47 1 1.1795 1.5749 8.1677 48 1 2.9123 1.8964 7.9180 49 1 0.6225 -0.2797 2.8488 50 1 1.6452 1.1091 2.3727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724554972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:15 Heat of formation + Delta-G solvation = -19.199385 kcal Electronic energy + Delta-G solvation = -29972.740540 eV Core-core repulsion = 26001.287352 eV Total energy + Delta-G solvation = -3971.453187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.50846 -41.11206 -39.29055 -37.76808 -36.70195 -35.84702 -34.19499 -31.98884 -30.85542 -30.67306 -28.86669 -28.22893 -28.21279 -26.49323 -25.48697 -23.92360 -23.63866 -22.74029 -21.34693 -21.05017 -20.10011 -19.18604 -18.73169 -17.86249 -17.53382 -17.34276 -16.54494 -16.43548 -16.03409 -15.79800 -15.52229 -15.31962 -15.02640 -14.73193 -14.62634 -14.45607 -14.06547 -13.89369 -13.84146 -13.50262 -13.24181 -13.18457 -12.95155 -12.90281 -12.79751 -12.62136 -12.58532 -12.30219 -12.17951 -12.11279 -12.04613 -12.02475 -11.98011 -11.66107 -11.55113 -11.47403 -11.32700 -10.94690 -10.88501 -10.02527 -9.57848 -8.96044 -7.89675 -5.16598 0.04839 1.06585 1.49132 1.49693 1.52078 1.59100 1.91849 2.18362 2.59065 3.05535 3.38837 3.43858 3.49657 3.67107 3.74194 3.85176 3.92647 3.93717 4.08109 4.24519 4.33726 4.37923 4.50555 4.54922 4.55194 4.63666 4.68722 4.74566 4.77013 4.81660 4.87381 4.93523 4.95010 4.98488 4.99558 5.01405 5.08946 5.14419 5.18296 5.22203 5.25390 5.34646 5.39784 5.43159 5.53477 5.56926 5.63058 6.32435 6.36989 6.51073 7.02728 7.39428 8.15556 8.39060 9.33993 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.002432 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.051246 B =11510.584628 C =12227.674031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.731 5.731 5 C -0.228 4.228 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.295 1.295 12 H -0.297 1.297 13 C -0.093 4.093 14 H 0.074 0.926 15 C -0.113 4.113 16 C 0.127 3.873 17 N -0.603 5.603 18 C 0.602 3.398 19 O -0.538 6.538 20 C -0.095 4.095 21 N -0.490 5.490 22 C 0.189 3.811 23 O -0.194 6.194 24 C 0.056 3.944 25 C 0.020 3.980 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.149 4.149 29 C 0.124 3.876 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.302 0.698 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.080 0.920 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 2.714 28.508 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.075 3.925 3 H 0.066 0.934 4 N -0.371 5.371 5 C -0.360 4.360 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.796 3.204 10 H -0.192 1.192 11 H -0.223 1.223 12 H -0.225 1.225 13 C -0.113 4.113 14 H 0.093 0.907 15 C -0.151 4.151 16 C 0.005 3.995 17 N -0.335 5.335 18 C 0.392 3.608 19 O -0.418 6.418 20 C -0.214 4.214 21 N -0.218 5.218 22 C -0.039 4.039 23 O -0.081 6.081 24 C -0.002 4.002 25 C 0.019 3.981 26 C -0.206 4.206 27 C -0.196 4.196 28 C -0.206 4.206 29 C 0.001 3.999 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.204 0.796 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.316 0.684 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.099 0.901 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.864 2.967 28.087 28.389 hybrid contribution 0.270 -0.209 -0.925 0.986 sum 3.134 2.758 27.163 27.481 Atomic orbital electron populations 1.22357 0.97880 1.00919 1.00736 1.20294 0.92537 0.94829 0.84859 0.93445 1.42534 1.78330 1.10272 1.05968 1.19594 1.34163 0.94039 0.88206 0.90795 1.25445 1.03411 0.96822 1.01122 1.69812 1.53029 1.10073 1.29112 0.85180 0.76649 0.78241 0.80362 1.19181 1.22275 1.22502 1.22505 0.95766 0.99613 0.93369 0.90735 1.22573 0.95544 1.02945 0.94052 1.21980 0.85866 1.00840 0.90833 1.48333 1.16407 1.64177 1.04545 1.16588 0.85839 0.77968 0.80392 1.90660 1.26789 1.49643 1.74745 1.21250 0.95641 1.11972 0.92514 1.70861 1.03292 1.15978 1.31689 1.29177 1.00066 0.98093 0.76569 1.84402 1.23763 1.61003 1.38895 1.24073 0.86605 0.96113 0.93384 1.19326 0.88472 0.96528 0.93730 1.22121 0.95703 0.98466 1.04329 1.21897 1.02466 1.02812 0.92460 1.22115 1.02079 0.92362 1.04078 1.22212 0.92268 0.99404 0.85985 0.93818 0.91302 0.94421 0.79557 0.94252 0.91168 0.90810 0.90984 0.90830 0.68367 0.92678 0.90189 0.91269 0.91898 0.89882 0.91901 0.91449 0.90092 0.92623 0.90122 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 9.21 71.98 0.66 -4.84 16 2 C 0.18 6.89 2.41 44.99 0.11 7.00 16 3 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 4 N -0.73 -35.40 4.89 -322.93 -1.58 -36.98 16 5 C -0.23 -12.32 9.93 84.03 0.83 -11.48 16 6 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 7 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 8 N -0.97 -58.61 13.06 21.65 0.28 -58.32 16 9 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 13 C -0.09 -2.95 2.63 -9.31 -0.02 -2.97 16 14 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 15 C -0.11 -3.50 6.22 31.87 0.20 -3.30 16 16 C 0.13 3.49 5.53 86.73 0.48 3.97 16 17 N -0.60 -17.30 3.33 -815.67 -2.71 -20.02 16 18 C 0.60 17.45 7.20 86.67 0.62 18.08 16 19 O -0.54 -16.36 10.52 -4.08 -0.04 -16.40 16 20 C -0.10 -2.42 6.61 40.41 0.27 -2.15 16 21 N -0.49 -10.94 8.86 -305.14 -2.70 -13.64 16 22 C 0.19 2.68 13.19 130.52 1.72 4.41 16 23 O -0.19 -3.31 10.19 0.35 0.00 -3.30 16 24 C 0.06 1.18 5.73 25.19 0.14 1.33 16 25 C 0.02 0.36 0.75 -52.93 -0.04 0.32 16 26 C -0.15 -2.87 8.19 71.98 0.59 -2.28 16 27 C -0.14 -1.76 8.05 71.98 0.58 -1.18 16 28 C -0.15 -2.83 8.17 71.98 0.59 -2.25 16 29 C 0.12 3.51 5.53 86.86 0.48 3.99 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.95 7.63 -2.38 -0.02 1.93 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.37 19.53 7.80 -92.71 -0.72 18.81 16 34 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 35 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 1.92 7.86 -2.39 -0.02 1.90 16 38 H 0.07 2.04 7.52 -2.39 -0.02 2.02 16 39 H 0.30 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 41 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 42 H 0.07 1.75 4.72 -2.39 -0.01 1.74 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 1.68 4.57 -2.39 -0.01 1.67 16 47 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 48 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 49 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 50 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 Total: -1.00 -67.98 392.45 3.17 -64.81 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.21 Total: 31.10 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 7.68 Total: 4.81 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -6.71 Total: -128.96 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -67.98 3.17 -64.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.608 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds