Wall clock time and date at job start Tue Mar 31 2020 19:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47114 * 2 1 4 4 N 1.46508 * 109.47393 * 119.99914 * 2 1 3 5 5 C 1.36931 * 120.00094 * 275.00112 * 4 2 1 6 6 H 1.08003 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00253 * 179.97438 * 5 4 2 8 8 N 1.31628 * 119.99611 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00395 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47099 * 59.99930 * 9 7 5 11 11 H 1.48501 * 109.47237 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47235 * 300.00222 * 9 7 5 13 13 C 1.52999 * 109.47325 * 240.00112 * 2 1 3 14 14 H 1.09005 * 110.88811 * 300.13520 * 13 2 1 15 15 C 1.55156 * 111.00676 * 176.21500 * 13 2 1 16 16 C 1.54316 * 102.86326 * 206.22661 * 15 13 2 17 17 N 1.47025 * 107.27440 * 22.52788 * 16 15 13 18 18 C 1.34779 * 125.64416 * 180.96160 * 17 16 15 19 19 O 1.21608 * 119.99531 * 179.41568 * 18 17 16 20 20 C 1.47415 * 120.00217 * 359.69672 * 18 17 16 21 21 N 1.36064 * 126.44980 * 354.81504 * 20 18 17 22 22 C 1.29939 * 108.47991 * 179.97438 * 21 20 18 23 23 O 1.34050 * 109.23775 * 0.02562 * 22 21 20 24 24 C 1.34252 * 108.23199 * 359.74747 * 23 22 21 25 25 C 1.50697 * 126.52732 * 180.24223 * 24 23 22 26 26 C 1.53002 * 109.47331 * 242.07423 * 25 24 23 27 27 C 1.52997 * 109.47183 * 2.08287 * 25 24 23 28 28 C 1.53005 * 109.46719 * 122.07712 * 25 24 23 29 29 C 1.47426 * 108.70408 * 0.70359 * 17 16 15 30 30 H 1.09008 * 109.47052 * 184.13507 * 1 2 3 31 31 H 1.08997 * 109.47166 * 304.13394 * 1 2 3 32 32 H 1.08995 * 109.47415 * 64.13684 * 1 2 3 33 33 H 0.97004 * 119.99719 * 95.00066 * 4 2 1 34 34 H 0.97000 * 119.99630 * 180.02562 * 8 7 5 35 35 H 1.08999 * 110.72053 * 324.78755 * 15 13 2 36 36 H 1.09006 * 110.72015 * 87.88484 * 15 13 2 37 37 H 1.08998 * 109.99204 * 263.04545 * 16 15 13 38 38 H 1.09008 * 109.77258 * 141.88374 * 16 15 13 39 39 H 1.07999 * 125.37950 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46579 * 68.70657 * 26 25 24 41 41 H 1.09003 * 109.46601 * 188.69754 * 26 25 24 42 42 H 1.08993 * 109.47282 * 308.70342 * 26 25 24 43 43 H 1.08995 * 109.47352 * 59.99300 * 27 25 24 44 44 H 1.08996 * 109.47091 * 179.97438 * 27 25 24 45 45 H 1.09002 * 109.46654 * 299.99444 * 27 25 24 46 46 H 1.09005 * 109.47161 * 51.83436 * 28 25 24 47 47 H 1.08999 * 109.47195 * 171.83262 * 28 25 24 48 48 H 1.08994 * 109.47183 * 291.83636 * 28 25 24 49 49 H 1.08997 * 110.36878 * 94.93619 * 29 17 16 50 50 H 1.08994 * 110.36595 * 217.15218 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6114 -0.6619 3.5093 8 7 2.9245 -1.9391 3.4501 9 14 2.7892 0.2697 5.1185 10 1 1.4666 0.8064 5.5285 11 1 3.2971 -0.6490 6.1689 12 1 3.7444 1.3922 4.9378 13 6 2.0400 -0.7212 -1.2492 14 1 1.6875 -1.7524 -1.2738 15 6 3.5880 -0.6597 -1.3339 16 6 3.8543 -0.7809 -2.8491 17 7 2.6297 -0.3558 -3.5429 18 6 2.4509 -0.3346 -4.8786 19 8 1.3873 0.0277 -5.3439 20 6 3.5424 -0.7563 -5.7752 21 7 4.8073 -1.0945 -5.4054 22 6 5.4782 -1.4095 -6.4727 23 8 4.6842 -1.2869 -7.5457 24 6 3.4729 -0.8858 -7.1282 25 6 2.2668 -0.6253 -7.9934 26 6 1.8579 0.8439 -7.8695 27 6 2.6080 -0.9385 -9.4516 28 6 1.1100 -1.5169 -7.5375 29 6 1.6277 0.0373 -2.5355 30 1 -0.3633 -1.0251 0.0741 31 1 -0.3633 0.5766 0.8506 32 1 -0.3634 0.4483 -0.9247 33 1 2.2491 -1.6318 1.1526 34 1 3.2472 -2.3965 4.2423 35 1 3.9579 0.2904 -0.9484 36 1 4.0372 -1.4941 -0.7951 37 1 4.0857 -1.8147 -3.1053 38 1 4.6840 -0.1324 -3.1307 39 1 6.5122 -1.7208 -6.4921 40 1 2.6165 1.4727 -8.3357 41 1 0.9013 0.9980 -8.3687 42 1 1.7647 1.1074 -6.8160 43 1 2.8993 -1.9851 -9.5399 44 1 1.7355 -0.7506 -10.0773 45 1 3.4321 -0.3034 -9.7764 46 1 0.9621 -1.3994 -6.4639 47 1 0.1999 -1.2284 -8.0633 48 1 1.3440 -2.5578 -7.7602 49 1 1.6604 1.1138 -2.3679 50 1 0.6305 -0.2663 -2.8538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724554974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:19 Heat of formation + Delta-G solvation = 0.936269 kcal Electronic energy + Delta-G solvation = -29979.711262 eV Core-core repulsion = 26009.131223 eV Total energy + Delta-G solvation = -3970.580040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.72488 -39.98281 -38.13423 -36.86609 -35.23004 -34.92383 -32.39055 -30.60482 -29.88060 -29.17750 -27.56585 -27.45528 -27.43570 -25.16085 -23.84394 -23.17498 -22.48601 -21.35560 -20.39459 -19.59153 -19.24776 -17.86346 -17.10335 -17.01123 -16.51433 -16.13289 -15.50370 -15.30585 -14.89305 -14.63783 -14.35240 -14.03929 -13.73178 -13.65207 -13.36808 -13.17540 -12.70575 -12.61160 -12.54243 -12.46784 -12.27493 -12.10594 -11.92440 -11.76783 -11.63657 -11.31472 -11.29616 -11.21917 -11.19390 -10.86333 -10.72207 -10.64624 -10.54215 -10.26288 -10.20398 -9.91071 -9.80172 -9.61547 -9.16534 -8.89527 -8.46898 -6.94880 -5.75373 -3.03644 0.91018 1.86454 2.28484 2.95898 3.18822 3.44621 3.49455 3.49966 3.81250 4.17744 4.41030 4.57798 4.64838 4.65970 4.81204 4.94572 5.00320 5.21081 5.24751 5.32751 5.40049 5.41495 5.52009 5.55792 5.61842 5.62201 5.64309 5.74775 5.75820 5.76482 5.88086 5.89570 5.89966 6.03249 6.06968 6.13739 6.21659 6.25199 6.29117 6.37382 6.48343 6.50596 6.65502 6.67274 6.89434 7.12132 7.23740 7.54603 7.71011 8.10523 8.43235 9.54538 10.11956 10.47011 11.47242 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.002437 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.313442 B =11488.416122 C =12207.997561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.721 5.721 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.080 0.920 15 C -0.118 4.118 16 C 0.111 3.889 17 N -0.597 5.597 18 C 0.608 3.392 19 O -0.528 6.528 20 C -0.069 4.069 21 N -0.455 5.455 22 C 0.166 3.834 23 O -0.197 6.197 24 C 0.055 3.945 25 C 0.023 3.977 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.153 4.153 29 C 0.115 3.885 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 1.142 -26.208 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.011 4.011 17 N -0.328 5.328 18 C 0.397 3.603 19 O -0.408 6.408 20 C -0.189 4.189 21 N -0.184 5.184 22 C -0.062 4.062 23 O -0.083 6.083 24 C -0.002 4.002 25 C 0.022 3.978 26 C -0.209 4.209 27 C -0.203 4.203 28 C -0.210 4.210 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.197 1.444 -25.752 25.886 hybrid contribution 0.388 -0.034 0.359 0.530 sum 2.585 1.410 -25.393 25.563 Atomic orbital electron populations 1.22496 0.99264 1.01203 0.99781 1.20126 0.91748 0.95140 0.85457 0.93309 1.42356 1.78156 1.10647 1.05103 1.19170 1.36374 0.93810 0.87301 0.91312 1.24714 1.02305 0.95958 0.97970 1.69650 1.51022 1.08620 1.28916 0.86299 0.77748 0.78599 0.83719 1.21361 1.21779 1.21328 1.22665 0.95498 1.00163 0.93931 0.90138 1.22631 0.96066 1.04005 0.92938 1.22178 0.86286 1.00398 0.92283 1.48322 1.16762 1.63349 1.04325 1.16294 0.85343 0.78267 0.80407 1.90657 1.26382 1.49267 1.74478 1.21372 0.93590 1.11697 0.92233 1.70898 1.03252 1.14329 1.29917 1.28070 0.98727 1.01395 0.78025 1.84364 1.20029 1.65026 1.38894 1.23858 0.85498 0.97083 0.93801 1.19229 0.87528 0.98455 0.92538 1.22185 1.00910 0.91883 1.05968 1.21936 1.02095 1.01987 0.94243 1.22182 0.95900 0.97379 1.05549 1.22373 0.92040 0.99460 0.86865 0.93354 0.92901 0.94355 0.78279 0.93531 0.90382 0.89568 0.91272 0.90946 0.73076 0.93331 0.91383 0.88557 0.92252 0.91358 0.92226 0.88801 0.91302 0.93245 0.91053 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.38 37.15 0.35 -2.61 16 2 C 0.19 3.51 2.40 -67.93 -0.16 3.34 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -17.27 4.88 -53.43 -0.26 -17.53 16 5 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 9 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.63 2.63 -88.47 -0.23 -1.87 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.82 6.19 -24.90 -0.15 -1.98 16 16 C 0.11 1.54 5.52 -3.07 -0.02 1.52 16 17 N -0.60 -8.65 3.33 -171.79 -0.57 -9.22 16 18 C 0.61 8.86 7.20 -12.52 -0.09 8.77 16 19 O -0.53 -8.01 10.52 5.27 0.06 -7.96 16 20 C -0.07 -0.90 6.61 -83.02 -0.55 -1.45 16 21 N -0.46 -5.41 8.87 -11.48 -0.10 -5.51 16 22 C 0.17 1.41 13.19 51.96 0.69 2.09 16 23 O -0.20 -1.92 10.19 6.52 0.07 -1.86 16 24 C 0.05 0.62 5.73 -35.08 -0.20 0.42 16 25 C 0.02 0.23 0.75 -155.66 -0.12 0.11 16 26 C -0.15 -1.53 8.19 37.16 0.30 -1.23 16 27 C -0.15 -1.11 8.05 37.16 0.30 -0.81 16 28 C -0.15 -1.57 8.17 37.16 0.30 -1.26 16 29 C 0.11 1.66 5.44 -2.53 -0.01 1.65 16 30 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.57 7.17 -51.93 -0.37 0.20 16 33 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 34 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 0.96 7.77 -51.93 -0.40 0.56 16 38 H 0.07 0.99 7.63 -51.92 -0.40 0.59 16 39 H 0.25 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 41 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.10 1.21 4.73 -51.93 -0.25 0.97 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 1.20 4.56 -51.93 -0.24 0.96 16 47 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 48 H 0.05 0.47 8.13 -51.93 -0.42 0.04 16 49 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 50 H 0.08 1.14 7.85 -51.93 -0.41 0.73 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -31.15 391.84 -7.29 -38.44 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.24 Total: 7.81 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.16 Total: -0.26 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.21 Total: -59.22 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.12 Total: -9.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.15 -7.29 -38.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.377 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds