Wall clock time and date at job start Tue Mar 31 2020 19:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47114 * 2 1 4 4 N 1.46508 * 109.47393 * 119.99914 * 2 1 3 5 5 C 1.36931 * 120.00094 * 275.00112 * 4 2 1 6 6 H 1.08003 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00253 * 179.97438 * 5 4 2 8 8 N 1.31628 * 119.99611 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00395 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47099 * 59.99930 * 9 7 5 11 11 H 1.48501 * 109.47237 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47235 * 300.00222 * 9 7 5 13 13 C 1.52999 * 109.47325 * 240.00112 * 2 1 3 14 14 H 1.09005 * 110.88811 * 300.13520 * 13 2 1 15 15 C 1.55156 * 111.00676 * 176.21500 * 13 2 1 16 16 C 1.54316 * 102.86326 * 206.22661 * 15 13 2 17 17 N 1.47025 * 107.27440 * 22.52788 * 16 15 13 18 18 C 1.34779 * 125.64416 * 180.96160 * 17 16 15 19 19 O 1.21608 * 119.99531 * 179.41568 * 18 17 16 20 20 C 1.47415 * 120.00217 * 359.69672 * 18 17 16 21 21 N 1.36064 * 126.44980 * 354.81504 * 20 18 17 22 22 C 1.29939 * 108.47991 * 179.97438 * 21 20 18 23 23 O 1.34050 * 109.23775 * 0.02562 * 22 21 20 24 24 C 1.34252 * 108.23199 * 359.74747 * 23 22 21 25 25 C 1.50697 * 126.52732 * 180.24223 * 24 23 22 26 26 C 1.53002 * 109.47331 * 242.07423 * 25 24 23 27 27 C 1.52997 * 109.47183 * 2.08287 * 25 24 23 28 28 C 1.53005 * 109.46719 * 122.07712 * 25 24 23 29 29 C 1.47426 * 108.70408 * 0.70359 * 17 16 15 30 30 H 1.09008 * 109.47052 * 184.13507 * 1 2 3 31 31 H 1.08997 * 109.47166 * 304.13394 * 1 2 3 32 32 H 1.08995 * 109.47415 * 64.13684 * 1 2 3 33 33 H 0.97004 * 119.99719 * 95.00066 * 4 2 1 34 34 H 0.97000 * 119.99630 * 180.02562 * 8 7 5 35 35 H 1.08999 * 110.72053 * 324.78755 * 15 13 2 36 36 H 1.09006 * 110.72015 * 87.88484 * 15 13 2 37 37 H 1.08998 * 109.99204 * 263.04545 * 16 15 13 38 38 H 1.09008 * 109.77258 * 141.88374 * 16 15 13 39 39 H 1.07999 * 125.37950 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46579 * 68.70657 * 26 25 24 41 41 H 1.09003 * 109.46601 * 188.69754 * 26 25 24 42 42 H 1.08993 * 109.47282 * 308.70342 * 26 25 24 43 43 H 1.08995 * 109.47352 * 59.99300 * 27 25 24 44 44 H 1.08996 * 109.47091 * 179.97438 * 27 25 24 45 45 H 1.09002 * 109.46654 * 299.99444 * 27 25 24 46 46 H 1.09005 * 109.47161 * 51.83436 * 28 25 24 47 47 H 1.08999 * 109.47195 * 171.83262 * 28 25 24 48 48 H 1.08994 * 109.47183 * 291.83636 * 28 25 24 49 49 H 1.08997 * 110.36878 * 94.93619 * 29 17 16 50 50 H 1.08994 * 110.36595 * 217.15218 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6114 -0.6619 3.5093 8 7 2.9245 -1.9391 3.4501 9 14 2.7892 0.2697 5.1185 10 1 1.4666 0.8064 5.5285 11 1 3.2971 -0.6490 6.1689 12 1 3.7444 1.3922 4.9378 13 6 2.0400 -0.7212 -1.2492 14 1 1.6875 -1.7524 -1.2738 15 6 3.5880 -0.6597 -1.3339 16 6 3.8543 -0.7809 -2.8491 17 7 2.6297 -0.3558 -3.5429 18 6 2.4509 -0.3346 -4.8786 19 8 1.3873 0.0277 -5.3439 20 6 3.5424 -0.7563 -5.7752 21 7 4.8073 -1.0945 -5.4054 22 6 5.4782 -1.4095 -6.4727 23 8 4.6842 -1.2869 -7.5457 24 6 3.4729 -0.8858 -7.1282 25 6 2.2668 -0.6253 -7.9934 26 6 1.8579 0.8439 -7.8695 27 6 2.6080 -0.9385 -9.4516 28 6 1.1100 -1.5169 -7.5375 29 6 1.6277 0.0373 -2.5355 30 1 -0.3633 -1.0251 0.0741 31 1 -0.3633 0.5766 0.8506 32 1 -0.3634 0.4483 -0.9247 33 1 2.2491 -1.6318 1.1526 34 1 3.2472 -2.3965 4.2423 35 1 3.9579 0.2904 -0.9484 36 1 4.0372 -1.4941 -0.7951 37 1 4.0857 -1.8147 -3.1053 38 1 4.6840 -0.1324 -3.1307 39 1 6.5122 -1.7208 -6.4921 40 1 2.6165 1.4727 -8.3357 41 1 0.9013 0.9980 -8.3687 42 1 1.7647 1.1074 -6.8160 43 1 2.8993 -1.9851 -9.5399 44 1 1.7355 -0.7506 -10.0773 45 1 3.4321 -0.3034 -9.7764 46 1 0.9621 -1.3994 -6.4639 47 1 0.1999 -1.2284 -8.0633 48 1 1.3440 -2.5578 -7.7602 49 1 1.6604 1.1138 -2.3679 50 1 0.6305 -0.2663 -2.8538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724554974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:18 Heat of formation + Delta-G solvation = -18.976204 kcal Electronic energy + Delta-G solvation = -29980.574732 eV Core-core repulsion = 26009.131223 eV Total energy + Delta-G solvation = -3971.443509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.50867 -41.11996 -39.30088 -37.76902 -36.69928 -35.84654 -34.19517 -31.99184 -30.86068 -30.67426 -28.86163 -28.23123 -28.21113 -26.49370 -25.48393 -23.92236 -23.64086 -22.74140 -21.34495 -21.04936 -20.10285 -19.18385 -18.73888 -17.84573 -17.55686 -17.34009 -16.54181 -16.40332 -16.07443 -15.77505 -15.53668 -15.30200 -15.02120 -14.74107 -14.63522 -14.46028 -14.04919 -13.91916 -13.82511 -13.51529 -13.24121 -13.18429 -12.95889 -12.88584 -12.74680 -12.62994 -12.57605 -12.28856 -12.22264 -12.17167 -12.04822 -12.02585 -11.97217 -11.68971 -11.54103 -11.45680 -11.32649 -10.93987 -10.87068 -10.02537 -9.57866 -8.96053 -7.89227 -5.16263 0.04885 1.06698 1.49536 1.51368 1.52177 1.57334 1.91556 2.18675 2.59487 3.05388 3.38902 3.43938 3.49845 3.66930 3.74118 3.85647 3.93061 3.93595 4.08090 4.23998 4.33895 4.37537 4.50479 4.54694 4.55134 4.63508 4.68355 4.74492 4.77037 4.82130 4.87332 4.92833 4.94428 4.98889 4.99737 5.01579 5.08634 5.14927 5.19131 5.21669 5.25711 5.33961 5.39394 5.43044 5.53405 5.56660 5.62583 6.32492 6.37023 6.51071 7.02735 7.39586 8.15729 8.39386 9.34023 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.002437 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.313442 B =11488.416122 C =12207.997561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.731 5.731 5 C -0.231 4.231 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.966 3.034 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.279 1.279 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.113 4.113 16 C 0.128 3.872 17 N -0.603 5.603 18 C 0.602 3.398 19 O -0.538 6.538 20 C -0.095 4.095 21 N -0.490 5.490 22 C 0.189 3.811 23 O -0.195 6.195 24 C 0.056 3.944 25 C 0.020 3.980 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.150 4.150 29 C 0.123 3.877 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.302 0.698 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.076 0.924 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 1.748 -28.400 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.075 3.925 3 H 0.065 0.935 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.796 3.204 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.205 1.205 13 C -0.113 4.113 14 H 0.093 0.907 15 C -0.151 4.151 16 C 0.006 3.994 17 N -0.335 5.335 18 C 0.392 3.608 19 O -0.418 6.418 20 C -0.214 4.214 21 N -0.218 5.218 22 C -0.039 4.039 23 O -0.081 6.081 24 C -0.002 4.002 25 C 0.019 3.981 26 C -0.206 4.206 27 C -0.196 4.196 28 C -0.207 4.207 29 C 0.001 3.999 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.316 0.684 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.674 2.090 -27.975 28.180 hybrid contribution 0.243 -0.206 0.923 0.976 sum 2.917 1.884 -27.052 27.274 Atomic orbital electron populations 1.22356 0.97892 1.00817 1.00770 1.20292 0.92529 0.94819 0.84884 0.93483 1.42514 1.78366 1.10250 1.05947 1.19527 1.34455 0.94061 0.88274 0.90855 1.25451 1.03329 0.96821 1.01128 1.69803 1.52875 1.10068 1.29262 0.85313 0.77806 0.77364 0.79894 1.20769 1.22483 1.20509 1.22456 0.95812 0.99647 0.93369 0.90662 1.22527 0.95548 1.02967 0.94094 1.21978 0.86247 1.00482 0.90732 1.48341 1.16712 1.63900 1.04525 1.16583 0.85811 0.77992 0.80392 1.90658 1.26991 1.49557 1.74630 1.21248 0.93916 1.13488 0.92729 1.70855 1.03174 1.16243 1.31536 1.29178 0.99695 0.98263 0.76769 1.84399 1.19597 1.64891 1.39180 1.24069 0.86309 0.96387 0.93409 1.19325 0.86874 0.98071 0.93789 1.22116 1.01858 0.92280 1.04305 1.21896 1.02925 1.02210 0.92605 1.22121 0.96785 0.97932 1.03849 1.22225 0.92261 0.99354 0.86065 0.94042 0.94357 0.91225 0.79534 0.94232 0.91170 0.90858 0.91249 0.90557 0.68359 0.92595 0.90204 0.91226 0.91980 0.89885 0.91817 0.91490 0.90087 0.92713 0.90628 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 9.38 71.98 0.68 -4.82 16 2 C 0.18 6.91 2.40 44.99 0.11 7.02 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.79 16 4 N -0.73 -35.44 4.88 -322.94 -1.58 -37.01 16 5 C -0.23 -12.52 9.93 84.03 0.83 -11.68 16 6 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 7 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 8 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 9 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C -0.09 -2.96 2.63 -9.40 -0.02 -2.98 16 14 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 15 C -0.11 -3.52 6.19 31.78 0.20 -3.32 16 16 C 0.13 3.51 5.52 86.73 0.48 3.99 16 17 N -0.60 -17.32 3.33 -815.67 -2.71 -20.03 16 18 C 0.60 17.46 7.20 86.66 0.62 18.08 16 19 O -0.54 -16.36 10.52 -4.06 -0.04 -16.40 16 20 C -0.10 -2.42 6.61 40.41 0.27 -2.15 16 21 N -0.49 -10.92 8.87 -305.15 -2.71 -13.63 16 22 C 0.19 2.68 13.19 130.52 1.72 4.40 16 23 O -0.19 -3.31 10.19 0.42 0.00 -3.31 16 24 C 0.06 1.19 5.73 25.19 0.14 1.33 16 25 C 0.02 0.36 0.75 -52.93 -0.04 0.32 16 26 C -0.15 -2.81 8.19 71.98 0.59 -2.22 16 27 C -0.14 -1.77 8.05 71.98 0.58 -1.19 16 28 C -0.15 -2.91 8.17 71.98 0.59 -2.32 16 29 C 0.12 3.50 5.44 86.86 0.47 3.97 16 30 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.97 7.17 -2.39 -0.02 1.95 16 33 H 0.37 19.55 7.80 -92.71 -0.72 18.82 16 34 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 36 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 37 H 0.07 1.91 7.77 -2.39 -0.02 1.89 16 38 H 0.08 2.05 7.63 -2.38 -0.02 2.03 16 39 H 0.30 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.05 0.94 8.13 -2.38 -0.02 0.92 16 41 H 0.08 1.27 8.07 -2.39 -0.02 1.26 16 42 H 0.07 1.74 4.73 -2.39 -0.01 1.73 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 1.70 4.56 -2.38 -0.01 1.69 16 47 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 48 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 49 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 50 H 0.08 2.28 7.85 -2.39 -0.02 2.26 16 Total: -1.00 -67.89 391.84 3.17 -64.72 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.22 Total: 31.40 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 7.68 Total: 4.65 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -6.71 Total: -128.99 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.89 3.17 -64.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724554974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.740 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds