Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47091 * 125.33428 * 3 2 1 5 5 C 1.53001 * 109.47462 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47462 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46893 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00460 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99660 * 179.97438 * 7 6 5 10 10 C 1.47481 * 127.03332 * 180.02562 * 9 7 6 11 11 C 1.54007 * 107.08547 * 205.48137 * 10 9 7 12 12 H 1.09002 * 110.32661 * 239.80084 * 11 10 9 13 13 N 1.46896 * 110.32598 * 117.68476 * 11 10 9 14 14 C 1.46902 * 110.99778 * 87.83978 * 13 11 10 15 15 C 1.50706 * 109.47150 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99688 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00106 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99899 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00224 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99768 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00354 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47181 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47114 * 120.00063 * 22 20 18 25 25 H 1.48505 * 109.47319 * 240.00112 * 22 20 18 26 26 C 1.54624 * 105.04303 * 358.69215 * 11 10 9 27 27 H 1.08999 * 110.73325 * 96.48577 * 26 11 10 28 28 C 1.52995 * 110.73925 * 219.81470 * 26 11 10 29 29 C 1.48121 * 127.03370 * 0.03837 * 9 7 6 30 30 H 4.44642 * 5.63364 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47614 * 5.32720 * 3 2 1 32 32 H 1.09005 * 109.47035 * 245.33071 * 3 2 1 33 33 H 1.08997 * 109.47485 * 59.99751 * 4 3 2 34 34 H 1.08998 * 109.47006 * 299.99371 * 4 3 2 35 35 H 1.08999 * 109.47236 * 59.99297 * 5 4 3 36 36 H 1.09005 * 109.47043 * 299.99875 * 5 4 3 37 37 H 1.08997 * 109.47485 * 59.99988 * 6 5 4 38 38 H 1.08998 * 109.47006 * 299.99608 * 6 5 4 39 39 H 1.09002 * 109.91669 * 86.12139 * 10 9 7 40 40 H 1.08997 * 109.91323 * 324.83900 * 10 9 7 41 41 H 1.00903 * 111.00023 * 211.79106 * 13 11 10 42 42 H 1.08994 * 109.47119 * 299.99404 * 14 13 11 43 43 H 1.08999 * 109.47128 * 59.99734 * 14 13 11 44 44 H 0.97003 * 119.99560 * 0.02562 * 17 15 14 45 45 H 0.96997 * 120.00058 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47452 * 59.99933 * 28 26 11 47 47 H 1.08995 * 109.46976 * 180.02562 * 28 26 11 48 48 H 1.09006 * 109.47160 * 299.99890 * 28 26 11 49 49 H 1.08996 * 110.66212 * 259.11369 * 29 9 7 50 50 H 1.09003 * 110.66051 * 22.23390 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1555 0.8351 -1.1767 5 6 4.6855 0.8364 -1.1764 6 6 5.1951 1.6703 -2.3536 7 6 6.7022 1.6710 -2.3535 8 8 7.3089 1.0646 -1.4962 9 7 7.3757 2.3455 -3.3063 10 6 8.8394 2.4500 -3.4541 11 6 9.1254 3.7611 -4.2099 12 1 9.6535 3.5540 -5.1407 13 7 9.9125 4.6732 -3.3696 14 6 11.3517 4.4255 -3.5285 15 6 12.1251 5.3783 -2.6537 16 8 11.5354 6.1846 -1.9659 17 7 13.4721 5.3343 -2.6357 18 6 14.1756 6.2013 -1.8402 19 1 13.6505 6.9194 -1.2278 20 6 15.5642 6.1563 -1.8220 21 7 16.2032 5.2830 -2.5677 22 14 16.5229 7.3373 -0.7377 23 1 15.5760 8.2132 -0.0018 24 1 17.3394 6.5657 0.2335 25 1 17.4153 8.1714 -1.5822 26 6 7.7333 4.3659 -4.5052 27 1 7.4667 5.1068 -3.7516 28 6 7.6949 4.9782 -5.9068 29 6 6.7974 3.1336 -4.4192 30 1 -1.0502 0.0000 0.0003 31 1 3.0098 -1.0224 -0.0954 32 1 3.0091 0.4298 0.9339 33 1 2.7917 1.8581 -1.0813 34 1 2.7925 0.4060 -2.1106 35 1 5.0497 -0.1865 -1.2716 36 1 5.0483 1.2657 -0.2425 37 1 4.8310 2.6933 -2.2588 38 1 4.8324 1.2406 -3.2873 39 1 9.2164 1.6021 -4.0259 40 1 9.3107 2.4776 -2.4717 41 1 9.6869 5.6359 -3.5710 42 1 11.5781 3.3997 -3.2379 43 1 11.6339 4.5787 -4.5702 44 1 13.9436 4.6896 -3.1861 45 1 17.1726 5.2519 -2.5552 46 1 7.9073 4.2064 -6.6465 47 1 6.7065 5.3981 -6.0928 48 1 8.4438 5.7670 -5.9793 49 1 6.8243 2.5644 -5.3483 50 1 5.7782 3.4404 -4.1841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724934657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = -33.004742 kcal Electronic energy + Delta-G solvation = -27823.600389 eV Core-core repulsion = 23851.548556 eV Total energy + Delta-G solvation = -3972.051833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30461 -38.59336 -37.87605 -36.39306 -34.70399 -33.79690 -33.46419 -32.56384 -31.20699 -30.48484 -28.83131 -26.69424 -26.50289 -25.13232 -24.09531 -22.23437 -21.55798 -20.32265 -19.44417 -19.09801 -18.35108 -17.86236 -17.24366 -16.71243 -16.25314 -15.86014 -15.52426 -15.08194 -14.86657 -14.64007 -14.53114 -14.23995 -14.10288 -13.74003 -13.58176 -13.41093 -13.27459 -12.99141 -12.80033 -12.52592 -12.18486 -12.12031 -12.07738 -11.87410 -11.60622 -11.54711 -11.54472 -11.25887 -11.18590 -11.03859 -11.00462 -10.78442 -10.54205 -10.43031 -10.33600 -10.21728 -9.88180 -9.51489 -8.81874 -8.46071 -8.11107 -7.95559 -6.41164 -3.81938 2.45666 2.50424 2.57053 2.82642 3.17058 3.27712 3.35048 3.90676 3.97150 4.04834 4.21095 4.25130 4.28991 4.53785 4.59063 4.61942 4.80253 4.94960 4.96372 5.07582 5.10670 5.12869 5.15897 5.20805 5.24608 5.28685 5.34558 5.39358 5.45066 5.51815 5.58830 5.62765 5.64061 5.69719 5.79672 5.85899 5.90450 5.92324 5.98203 6.01787 6.04102 6.17934 6.30351 7.18501 7.27637 7.44585 7.56142 7.60672 8.06998 8.09864 8.61644 9.18582 9.54745 10.06035 10.76614 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.001775 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.963522 B =15768.169204 C =16775.014668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.016 4.016 4 C -0.113 4.113 5 C -0.106 4.106 6 C -0.134 4.134 7 C 0.529 3.471 8 O -0.538 6.538 9 N -0.620 5.620 10 C 0.111 3.889 11 C 0.077 3.923 12 H 0.061 0.939 13 N -0.658 5.658 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.110 4.110 27 H 0.095 0.905 28 C -0.144 4.144 29 C 0.106 3.894 30 H 0.216 0.784 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.352 0.648 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.767 -9.162 -7.478 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.053 4.053 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.174 4.174 7 C 0.319 3.681 8 O -0.414 6.414 9 N -0.354 5.354 10 C -0.012 4.012 11 C -0.034 4.034 12 H 0.079 0.921 13 N -0.292 5.292 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.130 4.130 27 H 0.113 0.887 28 C -0.202 4.202 29 C -0.017 4.017 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.713 -9.419 -5.916 28.016 hybrid contribution 0.916 0.550 -0.828 1.352 sum -24.797 -8.869 -6.744 27.185 Atomic orbital electron populations 1.24918 0.96008 1.01363 1.01165 1.23236 0.94668 1.00173 1.00245 1.18778 0.84475 1.01851 1.00150 1.21551 0.95313 1.00385 0.97856 1.21370 0.93861 1.00990 0.98195 1.21639 0.91672 1.02880 1.01247 1.20347 0.89868 0.78106 0.79821 1.90730 1.70423 1.43540 1.36734 1.48750 1.07753 1.50893 1.28003 1.22148 0.80463 0.96077 1.02556 1.22516 0.93588 0.93176 0.94130 0.92079 1.60149 1.03909 1.08759 1.56376 1.21752 0.88183 1.00480 0.97933 1.19784 0.83028 0.87516 0.87055 1.90528 1.68901 1.41288 1.45985 1.41863 1.04334 1.33576 1.40225 1.19758 0.88682 1.13670 1.20734 0.87867 1.25257 0.96799 0.97921 0.97936 1.69621 1.09174 1.35600 1.39894 0.85805 0.79321 0.79800 0.79450 1.19220 1.20734 1.20784 1.22507 0.94464 0.97254 0.98742 0.88664 1.21777 1.02401 1.01033 0.94946 1.22609 0.97766 0.91441 0.89911 0.76749 0.89377 0.89287 0.91425 0.91524 0.90858 0.90682 0.88893 0.89081 0.91883 0.88977 0.82686 0.89576 0.93706 0.77464 0.91934 0.92276 0.92048 0.91944 0.90734 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.18 -1.51 13.34 -37.13 -0.50 -2.00 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.11 -0.71 5.17 -26.73 -0.14 -0.85 16 5 C -0.11 -0.84 4.50 -26.73 -0.12 -0.96 16 6 C -0.13 -1.05 4.63 -27.88 -0.13 -1.18 16 7 C 0.53 6.54 7.89 -10.98 -0.09 6.46 16 8 O -0.54 -9.01 16.32 5.56 0.09 -8.92 16 9 N -0.62 -6.99 3.29 -169.74 -0.56 -7.55 16 10 C 0.11 1.42 6.71 -2.98 -0.02 1.40 16 11 C 0.08 0.89 2.90 -66.34 -0.19 0.70 16 12 H 0.06 0.64 7.55 -51.93 -0.39 0.25 16 13 N -0.66 -10.29 5.81 -106.53 -0.62 -10.90 16 14 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 15 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 16 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 17 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 18 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.11 -0.97 3.12 -88.72 -0.28 -1.25 16 27 H 0.10 0.97 7.98 -51.93 -0.41 0.56 16 28 C -0.14 -0.99 9.16 37.16 0.34 -0.65 16 29 C 0.11 0.81 6.39 -2.11 -0.01 0.79 16 30 H 0.22 0.87 7.80 -54.08 -0.42 0.44 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.51 7.84 -51.93 -0.41 1.10 16 41 H 0.35 5.60 8.07 -39.29 -0.32 5.28 16 42 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 44 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.46 8.02 -51.93 -0.42 0.04 16 50 H 0.08 0.46 7.23 -51.93 -0.38 0.08 16 LS Contribution 419.60 15.07 6.32 6.32 Total: -1.00 -34.95 419.60 -8.59 -43.54 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -8.47 Total: 11.17 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.09 Total: 4.26 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.51 Total: -56.74 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.18 Total: -24.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.95 -8.59 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724934657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.534 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds