Wall clock time and date at job start Tue Mar 31 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47091 * 125.33428 * 3 2 1 5 5 C 1.53001 * 109.47462 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47462 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46893 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00460 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99660 * 179.97438 * 7 6 5 10 10 C 1.47481 * 127.03332 * 180.02562 * 9 7 6 11 11 C 1.54007 * 107.08547 * 205.48137 * 10 9 7 12 12 H 1.09002 * 110.32661 * 239.80084 * 11 10 9 13 13 N 1.46896 * 110.32598 * 117.68476 * 11 10 9 14 14 C 1.46902 * 110.99778 * 87.83978 * 13 11 10 15 15 C 1.50706 * 109.47150 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99688 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00106 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99899 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00224 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99768 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00354 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47181 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47114 * 120.00063 * 22 20 18 25 25 H 1.48505 * 109.47319 * 240.00112 * 22 20 18 26 26 C 1.54624 * 105.04303 * 358.69215 * 11 10 9 27 27 H 1.08999 * 110.73325 * 96.48577 * 26 11 10 28 28 C 1.52995 * 110.73925 * 219.81470 * 26 11 10 29 29 C 1.48121 * 127.03370 * 0.03837 * 9 7 6 30 30 H 4.44642 * 5.63364 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47614 * 5.32720 * 3 2 1 32 32 H 1.09005 * 109.47035 * 245.33071 * 3 2 1 33 33 H 1.08997 * 109.47485 * 59.99751 * 4 3 2 34 34 H 1.08998 * 109.47006 * 299.99371 * 4 3 2 35 35 H 1.08999 * 109.47236 * 59.99297 * 5 4 3 36 36 H 1.09005 * 109.47043 * 299.99875 * 5 4 3 37 37 H 1.08997 * 109.47485 * 59.99988 * 6 5 4 38 38 H 1.08998 * 109.47006 * 299.99608 * 6 5 4 39 39 H 1.09002 * 109.91669 * 86.12139 * 10 9 7 40 40 H 1.08997 * 109.91323 * 324.83900 * 10 9 7 41 41 H 1.00903 * 111.00023 * 211.79106 * 13 11 10 42 42 H 1.08994 * 109.47119 * 299.99404 * 14 13 11 43 43 H 1.08999 * 109.47128 * 59.99734 * 14 13 11 44 44 H 0.97003 * 119.99560 * 0.02562 * 17 15 14 45 45 H 0.96997 * 120.00058 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47452 * 59.99933 * 28 26 11 47 47 H 1.08995 * 109.46976 * 180.02562 * 28 26 11 48 48 H 1.09006 * 109.47160 * 299.99890 * 28 26 11 49 49 H 1.08996 * 110.66212 * 259.11369 * 29 9 7 50 50 H 1.09003 * 110.66051 * 22.23390 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1555 0.8351 -1.1767 5 6 4.6855 0.8364 -1.1764 6 6 5.1951 1.6703 -2.3536 7 6 6.7022 1.6710 -2.3535 8 8 7.3089 1.0646 -1.4962 9 7 7.3757 2.3455 -3.3063 10 6 8.8394 2.4500 -3.4541 11 6 9.1254 3.7611 -4.2099 12 1 9.6535 3.5540 -5.1407 13 7 9.9125 4.6732 -3.3696 14 6 11.3517 4.4255 -3.5285 15 6 12.1251 5.3783 -2.6537 16 8 11.5354 6.1846 -1.9659 17 7 13.4721 5.3343 -2.6357 18 6 14.1756 6.2013 -1.8402 19 1 13.6505 6.9194 -1.2278 20 6 15.5642 6.1563 -1.8220 21 7 16.2032 5.2830 -2.5677 22 14 16.5229 7.3373 -0.7377 23 1 15.5760 8.2132 -0.0018 24 1 17.3394 6.5657 0.2335 25 1 17.4153 8.1714 -1.5822 26 6 7.7333 4.3659 -4.5052 27 1 7.4667 5.1068 -3.7516 28 6 7.6949 4.9782 -5.9068 29 6 6.7974 3.1336 -4.4192 30 1 -1.0502 0.0000 0.0003 31 1 3.0098 -1.0224 -0.0954 32 1 3.0091 0.4298 0.9339 33 1 2.7917 1.8581 -1.0813 34 1 2.7925 0.4060 -2.1106 35 1 5.0497 -0.1865 -1.2716 36 1 5.0483 1.2657 -0.2425 37 1 4.8310 2.6933 -2.2588 38 1 4.8324 1.2406 -3.2873 39 1 9.2164 1.6021 -4.0259 40 1 9.3107 2.4776 -2.4717 41 1 9.6869 5.6359 -3.5710 42 1 11.5781 3.3997 -3.2379 43 1 11.6339 4.5787 -4.5702 44 1 13.9436 4.6896 -3.1861 45 1 17.1726 5.2519 -2.5552 46 1 7.9073 4.2064 -6.6465 47 1 6.7065 5.3981 -6.0928 48 1 8.4438 5.7670 -5.9793 49 1 6.8243 2.5644 -5.3483 50 1 5.7782 3.4404 -4.1841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724934657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:15 Heat of formation + Delta-G solvation = -57.233834 kcal Electronic energy + Delta-G solvation = -27824.651041 eV Core-core repulsion = 23851.548556 eV Total energy + Delta-G solvation = -3973.102485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21737 -40.17454 -39.12454 -36.99493 -36.20430 -35.53310 -34.09239 -33.45947 -33.21031 -31.17819 -29.84212 -28.02782 -27.27081 -26.25879 -25.45524 -23.14337 -22.18188 -21.31866 -20.88354 -20.22551 -19.87382 -18.85871 -18.27649 -17.65801 -17.43537 -16.91075 -16.68804 -16.42471 -16.19794 -15.98676 -15.59132 -15.20448 -15.13811 -14.97889 -14.77224 -14.31722 -14.01505 -13.93603 -13.81391 -13.59801 -13.51617 -13.20693 -13.11550 -12.89173 -12.76094 -12.68080 -12.54615 -12.42729 -12.15912 -12.13732 -12.07268 -11.95301 -11.60411 -11.53919 -11.53137 -11.12893 -10.96324 -10.83131 -10.36931 -10.03253 -9.74840 -9.34298 -8.48428 -5.97298 1.35265 1.40654 1.54902 1.65678 1.87407 1.94372 2.01500 2.03035 2.27946 2.88847 3.18824 3.36034 3.47017 3.51622 3.59404 3.84683 3.97619 4.04390 4.14629 4.22442 4.27458 4.38605 4.41280 4.42613 4.49159 4.55297 4.57744 4.60842 4.62325 4.74234 4.76211 4.82770 4.89633 4.92346 4.93985 5.06176 5.10161 5.22299 5.23261 5.29624 5.34128 5.39462 5.44204 5.46891 5.89062 6.09892 6.38685 6.58054 6.59742 6.73511 7.10866 7.18510 7.54012 8.09372 8.69165 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.001775 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.963522 B =15768.169204 C =16775.014668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.216 4.216 3 C -0.020 4.020 4 C -0.101 4.101 5 C -0.103 4.103 6 C -0.124 4.124 7 C 0.518 3.482 8 O -0.596 6.596 9 N -0.622 5.622 10 C 0.109 3.891 11 C 0.079 3.921 12 H 0.082 0.918 13 N -0.677 5.677 14 C 0.066 3.934 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.268 1.268 26 C -0.104 4.104 27 H 0.079 0.921 28 C -0.138 4.138 29 C 0.108 3.892 30 H 0.242 0.758 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.350 0.650 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.101 0.899 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.554 -9.193 -9.690 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.164 4.164 7 C 0.309 3.691 8 O -0.477 6.477 9 N -0.355 5.355 10 C -0.016 4.016 11 C -0.031 4.031 12 H 0.100 0.900 13 N -0.311 5.311 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.197 1.197 25 H -0.193 1.193 26 C -0.124 4.124 27 H 0.097 0.903 28 C -0.195 4.195 29 C -0.014 4.014 30 H 0.258 0.742 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.170 0.830 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.119 0.881 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -27.515 -9.454 -8.186 30.224 hybrid contribution 1.431 0.534 -0.131 1.533 sum -26.084 -8.920 -8.317 28.794 Atomic orbital electron populations 1.25698 0.96946 1.00391 1.00159 1.23690 0.95489 1.01156 1.01253 1.18822 0.84158 1.02225 1.00399 1.21436 0.93646 1.00645 0.98135 1.21300 0.95052 1.00219 0.97501 1.21686 0.87952 1.04248 1.02479 1.21270 0.91712 0.77155 0.78969 1.90700 1.71871 1.46122 1.39010 1.48915 1.07224 1.50667 1.28684 1.22078 0.81743 0.97365 1.00369 1.22615 0.94834 0.91843 0.93782 0.90005 1.60081 1.03163 1.09334 1.58523 1.21578 0.88565 0.98711 0.97796 1.20892 0.82641 0.87438 0.86627 1.90491 1.69610 1.43215 1.47751 1.41929 1.05115 1.33558 1.40338 1.19705 0.89656 1.14838 1.22285 0.90419 1.26033 0.97017 0.99260 0.98833 1.69675 1.09795 1.36232 1.40321 0.84874 0.77768 0.77804 0.77892 1.19886 1.19731 1.19310 1.22483 0.92721 0.97474 0.99690 0.90308 1.21743 1.03190 1.01010 0.93571 1.22900 0.98540 0.90388 0.89577 0.74188 0.89054 0.89492 0.90946 0.90367 0.92032 0.92823 0.86864 0.85924 0.90786 0.93515 0.83002 0.88664 0.90761 0.76960 0.91266 0.90821 0.90202 0.93137 0.88072 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.83 19.25 74.32 1.43 -1.40 16 2 C -0.22 -3.36 13.34 31.12 0.42 -2.94 16 3 C -0.02 -0.25 5.70 28.79 0.16 -0.09 16 4 C -0.10 -1.12 5.17 30.59 0.16 -0.96 16 5 C -0.10 -1.57 4.50 30.59 0.14 -1.43 16 6 C -0.12 -1.68 4.63 29.85 0.14 -1.54 16 7 C 0.52 12.63 7.89 87.66 0.69 13.32 16 8 O -0.60 -21.02 16.32 -3.01 -0.05 -21.06 16 9 N -0.62 -13.26 3.29 -809.32 -2.66 -15.92 16 10 C 0.11 2.76 6.71 86.53 0.58 3.34 16 11 C 0.08 1.72 2.90 45.81 0.13 1.86 16 12 H 0.08 1.48 7.55 -2.39 -0.02 1.46 16 13 N -0.68 -21.17 5.81 -490.96 -2.85 -24.02 16 14 C 0.07 2.27 6.01 85.56 0.51 2.78 16 15 C 0.44 21.18 7.82 87.66 0.69 21.87 16 16 O -0.62 -35.37 15.78 -3.07 -0.05 -35.42 16 17 N -0.57 -29.89 5.29 -306.98 -1.62 -31.52 16 18 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -50.09 13.05 21.66 0.28 -49.80 16 22 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 C -0.10 -1.59 3.12 -9.57 -0.03 -1.62 16 27 H 0.08 1.50 7.98 -2.39 -0.02 1.48 16 28 C -0.14 -1.43 9.16 71.98 0.66 -0.77 16 29 C 0.11 1.25 6.39 86.74 0.55 1.81 16 30 H 0.24 1.40 7.80 -4.41 -0.03 1.36 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 36 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 37 H 0.11 1.11 7.91 -2.39 -0.02 1.10 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.61 7.84 -2.39 -0.02 1.60 16 41 H 0.35 11.18 8.07 -89.69 -0.72 10.46 16 42 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 44 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.07 0.58 8.10 -2.39 -0.02 0.56 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.10 0.74 8.02 -2.39 -0.02 0.72 16 50 H 0.11 0.72 7.23 -2.39 -0.02 0.70 16 Total: -1.00 -80.36 419.60 2.07 -78.30 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.52 Total: 38.40 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.51 Total: 15.46 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -6.85 Total: -121.26 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.10 Total: -56.48 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -80.36 2.07 -78.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724934657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.062 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds